Non-Coding RNA Search

Ss1.1-Liv1-LVR010079D09.5

Sequence:


               
               AGGATCTGAGGAGGCAGAGTGCCTGGACCTCGCCTAGGCTGTGTCTCTGATTCATTTCTG
ACTTCAGGCAAGTTCCTTCAATGGGAAAAATGGCAAAGACGTTCAGTTTCATCCTCCTCA
CCACTGCTCTAGTAATGGTCAGGGAAAGCTGGGCCCTCGAGGAGGACTGCCTCCGGGAGC
AGGCACGGCTCAGAGCCCAGGTGCACCTGCTTGAGACCCGGGTCAAACAGCAGAAGGTCA
AGATCTTGCAGCTTTTGCAAGAGAAGGAAATCCAGTTCCTCGATAAAGGAGAAGAGAATA
GTGTCATTGACCTTGGAGGCAAGAGGCAATACGCAGATTGTTCAGAGATTTTCAATGATG
GTTTTAAGCAGAGTGGATTTTACAAAATCAAACCTCTCCAGAGCCCAGCAGAATTCTCTG
TTTATTGTGACATGTCTGATGGAGGAGGATGGACTGTAATTCAGAGACGATCTGATGGCA
GCGAGAATTTTAACAGAAATTGGAATGACTATGAAAATGGCTTTGGAAATTTTGTCCAAA
AAAATGGTGAATATTGGCTGGGTAATAGAAATCTTCACGTACTGACCACACAAGGAGACT
ACACCTTAAAAATTGACCTTGCAGATTTTGAAAAAAATAACCGTTATGCACAATATAAAA
ATTTCAAAGTTGGAGATGAAAAGAATTCCTATGATTTGCATATTGGGGAATATTCTGGAA
CAGCTGGAGACTCCCTTGCAGGGAATTTTCATCCTGAGGTACAATGGTGGGGTAGTCACC
AGAGAATGAAATTCAGCACATGGGACAGAGATAATGACAACTACGAAGGGAACTGTGCGA
AAGAGGATCTGTCTGGCTGGTGGTTTAACAGGTGTCACTCTGCAAACCTGAATGGTTTAT
ACCACAGTGGCCCCTACACGGCTAAAACTGACAATGGGATTGTCTGGCACACCTGGCATG
GATGGTGGTATTCTTTGAAATCTGTGGTTATGAAAATTAGACCAAATGATTTTATTCCAA
ATATTGTTTAATTGTCCCTGATGGGCTTTCATTTCAGCAGCTCATCTTGGTTTAAATGAT
TTGAAAAATAGCAATTTGGAATGTTCACATGTGTGATTACGTTGATTGTTATATGCACTG
CTTTTCGTTCTTAACTGCCTTTATCACTTAATGTACTTTCAGTACAGCAAATATATGATA
GTCACCAAATAAATGTAGATAATGTTAATACCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATCTGAGGAGGCAGAGTGCCTGGACCTCGCCTAGGCTGTGTCTCTGATTCATTTCTG
ACTTCAGGCAAGTTCCTTCAATGGGAAAAATGGCAAAGACGTTCAGTTTCATCCTCCTCA
CCACTGCTCTAGTAATGGTCAGGGAAAGCTGGGCCCTCGAGGAGGACTGCCTCCGGGAGC
AGGCACGGCTCAGAGCCCAGGTGCACCTGCTTGAGACCCGGGTCAAACAGCAGAAGGTCA
AGATCTTGCAGCTTTTGCAAGAGAAGGAAATCCAGTTCCTCGATAAAGGAGAAGAGAATA
GTGTCATTGACCTTGGAGGCAAGAGGCAATACGCAGATTGTTCAGAGATTTTCAATGATG
GTTTTAAGCAGAGTGGATTTTACAAAATCAAACCTCTCCAGAGCCCAGCAGAATTCTCTG
TTTATTGTGACATGTCTGATGGAGGAGGATGGACTGTAATTCAGAGACGATCTGATGGCA
GCGAGAATTTTAACAGAAATTGGAATGACTATGAAAATGGCTTTGGAAATTTTGTCCAAA
AAAATGGTGAATATTGGCTGGGTAATAGAAATCTTCACGTACTGACCACACAAGGAGACT
ACACCTTAAAAATTGACCTTGCAGATTTTGAAAAAAATAACCGTTATGCACAATATAAAA
ATTTCAAAGTTGGAGATGAAAAGAATTCCTATGATTTGCATATTGGGGAATATTCTGGAA
CAGCTGGAGACTCCCTTGCAGGGAATTTTCATCCTGAGGTACAATGGTGGGGTAGTCACC
AGAGAATGAAATTCAGCACATGGGACAGAGATAATGACAACTACGAAGGGAACTGTGCGA
AAGAGGATCTGTCTGGCTGGTGGTTTAACAGGTGTCACTCTGCAAACCTGAATGGTTTAT
ACCACAGTGGCCCCTACACGGCTAAAACTGACAATGGGATTGTCTGGCACACCTGGCATG
GATGGTGGTATTCTTTGAAATCTGTGGTTATGAAAATTAGACCAAATGATTTTATTCCAA
ATATTGTTTAATTGTCCCTGATGGGCTTTCATTTCAGCAGCTCATCTTGGTTTAAATGAT
TTGAAAAATAGCAATTTGGAATGTTCACATGTGTGATTACGTTGATTGTTATATGCACTG
CTTTTCGTTCTTAACTGCCTTTATCACTTAATGTACTTTCAGTACAGCAAATATATGATA
GTCACCAAATAAATGTAGATAATGTTAATACCAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57097933|ref|XP_532831.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57097933|ref|XP_532831.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               334-496, gnl|bosTau2|chr27 (12442364-12442526)
               

               
               334-496, gnl|Hg17|chr8 (17776313-17776151)
               

               
               334-496, gnl|Mm7|chr8 (39986034-39985872)
               


               
               593-703, gnl|bosTau2|chr27 (12446465-12446573)
               

               
               593-703, gnl|Hg17|chr8 (17770795-17770687)
               

               
               593-703, gnl|Mm7|chr8 (39982831-39982723)
               


               
               870-1230, gnl|bosTau2|chr27 (12452032-12452390)
               

               
               870-1230, gnl|Hg17|chr8 (17766542-17766178)
               

               
               870-1230, gnl|Mm7|chr8 (39977109-39976743)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               334-496, gnl|bosTau2|chr27 (12442364-12442526)
               

               
               334-496, gnl|Hg17|chr8 (17776313-17776151)
               

               
               334-496, gnl|Mm7|chr8 (39986034-39985872)
               


               
               593-703, gnl|bosTau2|chr27 (12446465-12446573)
               

               
               593-703, gnl|Hg17|chr8 (17770795-17770687)
               

               
               593-703, gnl|Mm7|chr8 (39982831-39982723)
               


               
               870-1230, gnl|bosTau2|chr27 (12452032-12452390)
               

               
               870-1230, gnl|Hg17|chr8 (17766542-17766178)
               

               
               870-1230, gnl|Mm7|chr8 (39977109-39976743)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               lun (3.00978)
               

               
               fli (0.811524)
               

               
               cte (0.29274)
               

               
               eli (0.151814)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (3.00978)
               

               
               fli (0.811524)
               

               
               cte (0.29274)
               

               
               eli (0.151814)
               

               
               tra (0.123092)

	334-496, gnl\|bosTau2\|chr27 (12442364-12442526)
	334-496, gnl\|Hg17\|chr8 (17776313-17776151)
	334-496, gnl\|Mm7\|chr8 (39986034-39985872)

	593-703, gnl\|bosTau2\|chr27 (12446465-12446573)
	593-703, gnl\|Hg17\|chr8 (17770795-17770687)
	593-703, gnl\|Mm7\|chr8 (39982831-39982723)

	870-1230, gnl\|bosTau2\|chr27 (12452032-12452390)
	870-1230, gnl\|Hg17\|chr8 (17766542-17766178)
	870-1230, gnl\|Mm7\|chr8 (39977109-39976743)

	lun (3.00978)
	fli (0.811524)
	cte (0.29274)
	eli (0.151814)
	tra (0.123092)