Non-Coding RNA Search

Ss1.1-Liv1-LVR010079G11.5

Sequence:


               
               AAAAATGTGACTTCTGGAAGCTGGGTGAACAACCACTGTGCTATCTGTACCCTTGTCCGG
GTCCCCGCTGCTGCTGTAATAGCCCAGGTCAAGAACATGGAGAGGCTGCTGCTTTGGGTC
TCTGTCCTCGCCAGTCTCCCAGAAGCCTTTGCTCACCGAGACCTCACGGGGAAGGTGTTT
GTGTTCCCTAGAGAGTCTGCCACTGACCATGTGAAACTGATCACAAAGCTGGAGAAACCT
CTGCAGAACTTTACCTTGTGTTTTCGAGCCTATAGTGACCTCTCTCGTGGTTACAGCCTC
TTCTCCTATAACCTCCAGGGCAAGGACAATGAGCTCCTGGTTTTTAAACATAGAATTGGA
GAGTACAGTCTATACATTGGAAAAACCAAAGTTACCTTCAAAGTTAGGGAGGTGTTCCCC
AGGCCGGTGCACATCTGTACCAGCTGGGAGTCTTCCACAGGCATTGCTGAGTTTTGGATC
AATGGAGAGCCGCTGGTGAAAAAGGGCCTGAGGCAGGGTTACTCTGTTGGAGCTTATCCC
AGGATTGTCCTGGGACAGGAGCAGGACAGCTATGGAGGAGGGTTTGATAAGACCCAGTCC
TTTGTGGGAGAGATTGGGGATCTGTACATGTGGGGCTCTGTGTTGTCTCCAAATGAGATC
CGGCTCGTATATCAGGGTTTGTCCTTCCCCCATCCCACCATCCTGGACTGGCAGGCACTG
AACTACGAAATGAATGGATATGTTGTCATCAAGCCCCGGGTGTGGAGCTGACGTCTGGAA
TCAACAAGAGGACTTGAACATGAAAACAACCAACATGCAAGAGCTCTGCTCAAGGCAACC
GGATACTAAATCCTACATCTGAAGTTCCTTACTCTTTGAATTTCCTGTCTCTATGTGTGC
CTGATTTTAAAATGTATTATGCCCCCCTGCACTTGTTCAGTGCTCATAATCCCAAACATT
TTCTCTTATAGCTACTTATTTGGAAATTGATATTTCATCATCCAGAAAAATCAGGTTGAA
AATTATGGTGGCAGAGGGATGAGGTACTTTGAAGTAACTAAAAAGATTTATCATAAAGCT
AGAGAACTCAATGAGGGGGCACAAGCGACACTTACAAGCTACTATTATTCACTGTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATGTGACTTCTGGAAGCTGGGTGAACAACCACTGTGCTATCTGTACCCTTGTCCGG
GTCCCCGCTGCTGCTGTAATAGCCCAGGTCAAGAACATGGAGAGGCTGCTGCTTTGGGTC
TCTGTCCTCGCCAGTCTCCCAGAAGCCTTTGCTCACCGAGACCTCACGGGGAAGGTGTTT
GTGTTCCCTAGAGAGTCTGCCACTGACCATGTGAAACTGATCACAAAGCTGGAGAAACCT
CTGCAGAACTTTACCTTGTGTTTTCGAGCCTATAGTGACCTCTCTCGTGGTTACAGCCTC
TTCTCCTATAACCTCCAGGGCAAGGACAATGAGCTCCTGGTTTTTAAACATAGAATTGGA
GAGTACAGTCTATACATTGGAAAAACCAAAGTTACCTTCAAAGTTAGGGAGGTGTTCCCC
AGGCCGGTGCACATCTGTACCAGCTGGGAGTCTTCCACAGGCATTGCTGAGTTTTGGATC
AATGGAGAGCCGCTGGTGAAAAAGGGCCTGAGGCAGGGTTACTCTGTTGGAGCTTATCCC
AGGATTGTCCTGGGACAGGAGCAGGACAGCTATGGAGGAGGGTTTGATAAGACCCAGTCC
TTTGTGGGAGAGATTGGGGATCTGTACATGTGGGGCTCTGTGTTGTCTCCAAATGAGATC
CGGCTCGTATATCAGGGTTTGTCCTTCCCCCATCCCACCATCCTGGACTGGCAGGCACTG
AACTACGAAATGAATGGATATGTTGTCATCAAGCCCCGGGTGTGGAGCTGACGTCTGGAA
TCAACAAGAGGACTTGAACATGAAAACAACCAACATGCAAGAGCTCTGCTCAAGGCAACC
GGATACTAAATCCTACATCTGAAGTTCCTTACTCTTTGAATTTCCTGTCTCTATGTGTGC
CTGATTTTAAAATGTATTATGCCCCCCTGCACTTGTTCAGTGCTCATAATCCCAAACATT
TTCTCTTATAGCTACTTATTTGGAAATTGATATTTCATCATCCAGAAAAATCAGGTTGAA
AATTATGGTGGCAGAGGGATGAGGTACTTTGAAGTAACTAAAAAGATTTATCATAAAGCT
AGAGAACTCAATGAGGGGGCACAAGCGACACTTACAAGCTACTATTATTCACTGTATTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55742849|ref|NP_999052.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55742849|ref|NP_999052.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               518-637, + strand, RNAz p=0.928437

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               518-637, + strand, RNAz p=0.928437

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-155, gnl|bosTau2|chr3 (9662450-9662295)
               

               
               1-155, gnl|Hg17|chr1 (156370687-156370843)
               

               
               1-155, gnl|Mm7|chr1 (172866645-172866509)
               


               
               159-1140, gnl|bosTau2|chr3 (9662181-9661217)
               

               
               159-1140, gnl|Hg17|chr1 (156370962-156371962)
               

               
               159-1140, gnl|Mm7|chr1 (172866395-172864988)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-155, gnl|bosTau2|chr3 (9662450-9662295)
               

               
               1-155, gnl|Hg17|chr1 (156370687-156370843)
               

               
               1-155, gnl|Mm7|chr1 (172866645-172866509)
               


               
               159-1140, gnl|bosTau2|chr3 (9662181-9661217)
               

               
               159-1140, gnl|Hg17|chr1 (156370962-156371962)
               

               
               159-1140, gnl|Mm7|chr1 (172866395-172864988)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (2.25734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (2.25734)

	1-155, gnl\|bosTau2\|chr3 (9662450-9662295)
	1-155, gnl\|Hg17\|chr1 (156370687-156370843)
	1-155, gnl\|Mm7\|chr1 (172866645-172866509)

	159-1140, gnl\|bosTau2\|chr3 (9662181-9661217)
	159-1140, gnl\|Hg17\|chr1 (156370962-156371962)
	159-1140, gnl\|Mm7\|chr1 (172866395-172864988)