Ss1.1-Liv1-LVR010081C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCCAGAAAATTGGCAAGAAGACCTGGGACTCAGGGTGAGAGAGGAGAAATGGAAAGT TCCCCGTGCGTCTCTATTTTCTTGGTTTTGTGCATCTTTATCCAATCAAGTGCCCATGGA CAGAGCCTGGGATTAGAGCTACTGGGAAGAAGATCTCGAGCTGCTGAAACAAAGGAAACA TTGCAGGAGACAAAAACCACCAGATTCCTTCTCTTTAGAGAAGAAACCGATCAGGGCTGT CAGATTCGGCTCGATCACCTAGACACGTTACAGCAGTGTGGCTTCAACTCCTCTCTGCCC CTGGTGATGATAATCCACGGCTGGTTGATGGATGGCTTGCTGGAAGACTGGGTCTTGCAG ATGGTGGCGGCACTGAAGTCTCAGCTGGCCCAGCCAGTGAACGTGGGGCTGGCAGACTGG GTCACCCTGGCCCACAACCACTATACCATGGCTGTCCGCAACACCCGCCTCGTTGGCCGG GAGATCAAGGCTCTTCTCCGGTGGCTGGAGGAATCTGTTCATTTTTCTCCAAGCAAGGTT CATCTAATTGGGTACAGCCTGGGTGCACACGTCGCCGGATTCGCTGGCAGTTACATGGGC AGAAAGCACAAGATTGGGAGAATTACAGGGCTGGATGCAGCGGGACCTTTGTTTGAAAGA GCTTCTCCCAGAGACCGTCTTTCACCGGATGACGCCAATTTTGTGGACGCCATTCACACC TTTACCCGGGAGCACATGGGCCTGAGCGTGGGCATCAAAAGGCCCATAGCGCACTATGAC TTCTACCCCAATGGGGGCTCCTTCCAGCCTGGCTGTCACTTGCTAGAGCTCTACAAACAC ATTGCAACGCACGGCTTGAATGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCCAGAAAATTGGCAAGAAGACCTGGGACTCAGGGTGAGAGAGGAGAAATGGAAAGT TCCCCGTGCGTCTCTATTTTCTTGGTTTTGTGCATCTTTATCCAATCAAGTGCCCATGGA CAGAGCCTGGGATTAGAGCTACTGGGAAGAAGATCTCGAGCTGCTGAAACAAAGGAAACA TTGCAGGAGACAAAAACCACCAGATTCCTTCTCTTTAGAGAAGAAACCGATCAGGGCTGT CAGATTCGGCTCGATCACCTAGACACGTTACAGCAGTGTGGCTTCAACTCCTCTCTGCCC CTGGTGATGATAATCCACGGCTGGTTGATGGATGGCTTGCTGGAAGACTGGGTCTTGCAG ATGGTGGCGGCACTGAAGTCTCAGCTGGCCCAGCCAGTGAACGTGGGGCTGGCAGACTGG GTCACCCTGGCCCACAACCACTATACCATGGCTGTCCGCAACACCCGCCTCGTTGGCCGG GAGATCAAGGCTCTTCTCCGGTGGCTGGAGGAATCTGTTCATTTTTCTCCAAGCAAGGTT CATCTAATTGGGTACAGCCTGGGTGCACACGTCGCCGGATTCGCTGGCAGTTACATGGGC AGAAAGCACAAGATTGGGAGAATTACAGGGCTGGATGCAGCGGGACCTTTGTTTGAAAGA GCTTCTCCCAGAGACCGTCTTTCACCGGATGACGCCAATTTTGTGGACGCCATTCACACC TTTACCCGGGAGCACATGGGCCTGAGCGTGGGCATCAAAAGGCCCATAGCGCACTATGAC TTCTACCCCAATGGGGGCTCCTTCCAGCCTGGCTGTCACTTGCTAGAGCTCTACAAACAC ATTGCAACGCACGGCTTGAATGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr10 (33807314-33807187) | |
| 1-132, gnl|canFam2|chr30 (26441341-26441733) | |
| 1-132, gnl|echTel1|scaffold_168502 (3567-3953) | |
| 1-132, gnl|hg17|chr15 (56511371-56511792) | |
| 1-132, gnl|Hg17|chr15 (56511476-56511607) | |
| 1-132, gnl|mm7|chr9 (70969735-70969330) | |
| 1-132, gnl|Mm7|chr9 (70969630-70969500) | |
| 1-132, gnl|monDom2|scaffold_12 (36598549-36598969) | |
| 1-132, gnl|oryCun1|scaffold_138539 (4394-4795) | |
| 1-132, gnl|panTro1|chr16 (56923469-56923890) | |
| 1-132, gnl|rheMac2|chr7 (36761723-36762145) | |
| 1-132, gnl|rn3|chr8 (75469469-75469066) | |
| 135-327, gnl|bosTau2|chr10 (33705001-33705190) | |
| 135-327, gnl|Hg17|chr15 (56617822-56618008) | |
| 135-327, gnl|Mm7|chr9 (70858179-70857987) | |
| 329-511, gnl|bosTau2|chr10 (33709192-33709374) | |
| 329-511, gnl|canFam2|chr30 (26550376-26550571) | |
| 329-511, gnl|danRer3|chr22 (15231054-15230863) | |
| 329-511, gnl|dasNov1|scaffold_12452 (116124-116319) | |
| 329-511, gnl|echTel1|scaffold_230149 (1806-1618) | |
| 329-511, gnl|fr1|chrUn (81432942-81432749) | |
| 329-511, gnl|galGal2|chr10 (7764397-7764212) | |
| 329-511, gnl|hg17|chr15 (56621267-56621462) | |
| 329-511, gnl|Hg17|chr15 (56621277-56621459) | |
| 329-511, gnl|loxAfr1|scaffold_23995 (15018-14826) | |
| 329-511, gnl|mm7|chr9 (70852489-70852294) | |
| 329-511, gnl|Mm7|chr9 (70852477-70852295) | |
| 329-511, gnl|monDom2|scaffold_12 (36779734-36779929) | |
| 329-511, gnl|oryCun1|scaffold_214778 (50060-49868) | |
| 329-511, gnl|panTro1|chr16 (57034269-57034464) | |
| 329-511, gnl|rheMac2|chr7 (36875613-36875808) | |
| 329-511, gnl|rn3|chr8 (75365918-75365723) | |
| 329-511, gnl|tetNig1|chr5 (5483159-5483338) | |
| 329-511, gnl|xenTro1|scaffold_297 (967635-967443) | |
| 627-862, gnl|bosTau2|chr10 (33712863-33713098) | |
| 627-862, gnl|canFam2|chr30 (26554061-26554282) | |
| 627-862, gnl|danRer3|chr22 (15229218-15229005) | |
| 627-862, gnl|dasNov1|scaffold_14450 (38351-38148) | |
| 627-862, gnl|echTel1|scaffold_320683 (116846-116625) | |
| 627-862, gnl|fr1|chrUn (81432492-81432267) | |
| 627-862, gnl|galGal2|chr10 (7760776-7760555) | |
| 627-862, gnl|hg17|chr15 (56625223-56625444) | |
| 627-862, gnl|Hg17|chr15 (56625231-56625466) | |
| 627-862, gnl|loxAfr1|scaffold_53418 (10657-10436) | |
| 627-862, gnl|mm7|chr9 (70849102-70848881) | |
| 627-862, gnl|Mm7|chr9 (70849092-70848857) | |
| 627-862, gnl|monDom2|scaffold_12 (36786780-36787001) | |
| 627-862, gnl|oryCun1|scaffold_199506 (54228-54450) | |
| 627-862, gnl|panTro1|chr16 (57038229-57038450) | |
| 627-862, gnl|rheMac2|chr7 (36879924-36880145) | |
| 627-862, gnl|rn3|chr8 (75362188-75361967) | |
| 627-862, gnl|tetNig1|chr5 (5483596-5483822) | |
| 627-862, gnl|xenTro1|scaffold_297 (958793-958589) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr10 (33807314-33807187) | |
| 1-132, gnl|canFam2|chr30 (26441341-26441733) | |
| 1-132, gnl|echTel1|scaffold_168502 (3567-3953) | |
| 1-132, gnl|hg17|chr15 (56511371-56511792) | |
| 1-132, gnl|Hg17|chr15 (56511476-56511607) | |
| 1-132, gnl|mm7|chr9 (70969735-70969330) | |
| 1-132, gnl|Mm7|chr9 (70969630-70969500) | |
| 1-132, gnl|monDom2|scaffold_12 (36598549-36598969) | |
| 1-132, gnl|oryCun1|scaffold_138539 (4394-4795) | |
| 1-132, gnl|panTro1|chr16 (56923469-56923890) | |
| 1-132, gnl|rheMac2|chr7 (36761723-36762145) | |
| 1-132, gnl|rn3|chr8 (75469469-75469066) | |
| 135-327, gnl|bosTau2|chr10 (33705001-33705190) | |
| 135-327, gnl|Hg17|chr15 (56617822-56618008) | |
| 135-327, gnl|Mm7|chr9 (70858179-70857987) | |
| 329-511, gnl|bosTau2|chr10 (33709192-33709374) | |
| 329-511, gnl|canFam2|chr30 (26550376-26550571) | |
| 329-511, gnl|danRer3|chr22 (15231054-15230863) | |
| 329-511, gnl|dasNov1|scaffold_12452 (116124-116319) | |
| 329-511, gnl|echTel1|scaffold_230149 (1806-1618) | |
| 329-511, gnl|fr1|chrUn (81432942-81432749) | |
| 329-511, gnl|galGal2|chr10 (7764397-7764212) | |
| 329-511, gnl|hg17|chr15 (56621267-56621462) | |
| 329-511, gnl|Hg17|chr15 (56621277-56621459) | |
| 329-511, gnl|loxAfr1|scaffold_23995 (15018-14826) | |
| 329-511, gnl|mm7|chr9 (70852489-70852294) | |
| 329-511, gnl|Mm7|chr9 (70852477-70852295) | |
| 329-511, gnl|monDom2|scaffold_12 (36779734-36779929) | |
| 329-511, gnl|oryCun1|scaffold_214778 (50060-49868) | |
| 329-511, gnl|panTro1|chr16 (57034269-57034464) | |
| 329-511, gnl|rheMac2|chr7 (36875613-36875808) | |
| 329-511, gnl|rn3|chr8 (75365918-75365723) | |
| 329-511, gnl|tetNig1|chr5 (5483159-5483338) | |
| 329-511, gnl|xenTro1|scaffold_297 (967635-967443) | |
| 627-862, gnl|bosTau2|chr10 (33712863-33713098) | |
| 627-862, gnl|canFam2|chr30 (26554061-26554282) | |
| 627-862, gnl|danRer3|chr22 (15229218-15229005) | |
| 627-862, gnl|dasNov1|scaffold_14450 (38351-38148) | |
| 627-862, gnl|echTel1|scaffold_320683 (116846-116625) | |
| 627-862, gnl|fr1|chrUn (81432492-81432267) | |
| 627-862, gnl|galGal2|chr10 (7760776-7760555) | |
| 627-862, gnl|hg17|chr15 (56625223-56625444) | |
| 627-862, gnl|Hg17|chr15 (56625231-56625466) | |
| 627-862, gnl|loxAfr1|scaffold_53418 (10657-10436) | |
| 627-862, gnl|mm7|chr9 (70849102-70848881) | |
| 627-862, gnl|Mm7|chr9 (70849092-70848857) | |
| 627-862, gnl|monDom2|scaffold_12 (36786780-36787001) | |
| 627-862, gnl|oryCun1|scaffold_199506 (54228-54450) | |
| 627-862, gnl|panTro1|chr16 (57038229-57038450) | |
| 627-862, gnl|rheMac2|chr7 (36879924-36880145) | |
| 627-862, gnl|rn3|chr8 (75362188-75361967) | |
| 627-862, gnl|tetNig1|chr5 (5483596-5483822) | |
| 627-862, gnl|xenTro1|scaffold_297 (958793-958589) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.202881) |