Non-Coding RNA Search

Ss1.1-Liv1-LVR010081E02.5

Sequence:


               
               GGAATTACTGAAAGCCAGAGACTCAGGCAAAGAGTTTCTGCTTCTGGTGGAGAGGAAAGG
AGGGCAGTGGACCTCAGGGGACTCAAGAGGGAGACACAATGGAATCTGGCTTCACCTCCA
AGGATGCTTATCTGAGCCATTTTAACCCTCAGGATTACCTAGAAAAATATTACAACTTTG
GGGCCAAACACTCCGCAGAAGACCAGATTCTTAGGCATCTTCTGAAAATCCTTTTCAAGA
TATTTTGCCTAGATGGTGTGAAGGGGGACCTCCTGATTGACATCGGCTCTGGCCCCACCA
TCTATCAGCTCCTCTCTGCTTGTGAGTCTTTCAAGGAGATCATTGCCACCGACTACACGG
ACCAGAACCTGCAGGAGCTGGAGAAGTGGCTGAAGAAGGAGCCAGGGGCCTTTGACTGGT
CCCCAGTGGTGACCTATGTGTGTGAGCTCGAAGGGAACAGAGTCAAGGGAACGGAAAAGG
AGGAGAAGCTGAGGCGGGCGGTCAAGCGGGTCCTGAAGTGTGACGTCACGCAGAGCTGGC
CACTGGGTGCCGTCCCCCTGCCTCCGGCTGACTGTCTGCTCAGCACACTGTGCCTCCATG
CTGCCTGCCCGGACCTGCCCACCTACCGCACTGCCCTCGGGAACCTGCGCAGCCTGCTGA
AGCCGGGGGGCTTCCTGGTGCTCGTGGACGCCCTGAAGAGCAGCTACTACATGATTGGGG
AGCAGAGGTTCTCCAGCCTCTGTCTGGGCCGGGAGGCCGTGGAGGCTGCCGTGAGAGAGG
CTGGCTATACCATCGAACACTTCGAAGTGATCTCCCAAAGTTATTCTTCCACCATGGCCA
ACAATGAAGGGCTTTTCTCCTTGGTGGGGCGGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATTACTGAAAGCCAGAGACTCAGGCAAAGAGTTTCTGCTTCTGGTGGAGAGGAAAGG
AGGGCAGTGGACCTCAGGGGACTCAAGAGGGAGACACAATGGAATCTGGCTTCACCTCCA
AGGATGCTTATCTGAGCCATTTTAACCCTCAGGATTACCTAGAAAAATATTACAACTTTG
GGGCCAAACACTCCGCAGAAGACCAGATTCTTAGGCATCTTCTGAAAATCCTTTTCAAGA
TATTTTGCCTAGATGGTGTGAAGGGGGACCTCCTGATTGACATCGGCTCTGGCCCCACCA
TCTATCAGCTCCTCTCTGCTTGTGAGTCTTTCAAGGAGATCATTGCCACCGACTACACGG
ACCAGAACCTGCAGGAGCTGGAGAAGTGGCTGAAGAAGGAGCCAGGGGCCTTTGACTGGT
CCCCAGTGGTGACCTATGTGTGTGAGCTCGAAGGGAACAGAGTCAAGGGAACGGAAAAGG
AGGAGAAGCTGAGGCGGGCGGTCAAGCGGGTCCTGAAGTGTGACGTCACGCAGAGCTGGC
CACTGGGTGCCGTCCCCCTGCCTCCGGCTGACTGTCTGCTCAGCACACTGTGCCTCCATG
CTGCCTGCCCGGACCTGCCCACCTACCGCACTGCCCTCGGGAACCTGCGCAGCCTGCTGA
AGCCGGGGGGCTTCCTGGTGCTCGTGGACGCCCTGAAGAGCAGCTACTACATGATTGGGG
AGCAGAGGTTCTCCAGCCTCTGTCTGGGCCGGGAGGCCGTGGAGGCTGCCGTGAGAGAGG
CTGGCTATACCATCGAACACTTCGAAGTGATCTCCCAAAGTTATTCTTCCACCATGGCCA
ACAATGAAGGGCTTTTCTCCTTGGTGGGGCGGAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6FH49_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FH49_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               665-784, + strand, RNAz p=0.569939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               665-784, + strand, RNAz p=0.569939

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               426-874, gnl|bosTau2|chr15 (11825987-11825543)
               

               
               426-874, gnl|Hg17|chr11 (113687942-113688390)
               

               
               426-874, gnl|Mm7|chr9 (48564571-48564123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-874, gnl|bosTau2|chr15 (11825987-11825543)
               

               
               426-874, gnl|Hg17|chr11 (113687942-113688390)
               

               
               426-874, gnl|Mm7|chr9 (48564571-48564123)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cli (0.152812)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	426-874, gnl\|bosTau2\|chr15 (11825987-11825543)
	426-874, gnl\|Hg17\|chr11 (113687942-113688390)
	426-874, gnl\|Mm7\|chr9 (48564571-48564123)