Ss1.1-Liv1-LVR010082A09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCTGTGGCCCCCCCAGCTCATCATGGCTCGGGCGCTGGGAACAGTGGGGGCACCGTGG CTGTTGGGGCTCTGCTGCTCTCTGGCCATCGCCCACCCTCTTTCTCTGACTGCTGGCCCT AAGCACGGAGCTGAAGGCAGGAATGAGTCCAAGCCGGACCCAGACGTGACCGAACGCTGC TCGGATGGCTGGGGCTTCGACGCCAGCACCCTGGATGAGCACGGGGCTATGCTGTTTTTT AAAGGGCCGTCTGTGTGGGCGGGTCAAAACTGGACCCGGGGGTTAATCTCAGAGAGGTGG AAAAACGCCCCCAGCTCCGTGGACGCCGCCTTCCGCCGTGGTCACGACAGAGTCTTTCTC ATCCAGGGGGACAAGGTCTGGGTCTACCCTCCAGAGAAGGAGAAAGAAAATCCAAGGTCG CTCCAAGAGGAGTTTCCTGGAGTCCCATCCCCACTGGATGCTGCAGTGGAATGTCACCGT GGAGAATGCCAAGATGAGGGCGTCCTCTTCTTCCAAGGCACCCACACCTGGTTCTGGGAC TCCACGACAAAAACCACAAAGGAGCGCCTCTGGCCGGCCGTGGGCAACTGCTCCTCCGCC ATGCGATGGATCAGCCGCTACTACTGCTTCCGGGGTAACCAGTTCCTGCGCTTTGACCCT GTCACGGGACATGTGGATCCCAAATACCCTCGGGATGTCCGCGACTACTTCATGTCCTGC CCGGGCAGAGGCCATGCACACAGGAACGCAACCCACCGTGGGGATGACCGCTGTAGCCCA GACCTGGTCTTGACTGCACTGCTGTCTGACAACCACGGTGCCACCTACGCCTTCCGTGGG ACCCACTACTGGCGTCTGGACACCAGCCGGGACGGGTGGCACAGCTGGCCCATTGACCAT CAGTGGTCCCACGGTCCTTCGGCCGTGGATGCTGCCTTTTCCTGGGATGACAAGCTCTAT CTGATCCAGGGCACCCAGGTCTATATCTTCCTGACAAAGGCGGGCTACACCCTGGTAGAC AATTACCCAAAGCAGCTGGAGAAGGAGCTCGGGAGCCCTCACGGCATCAGCCTTGACGCT GTGGATGCGACCTTTGTCTGTCCTGGGACGTCTCGGCTCCACGTCATGGCAGGACGGAAG CTGTGGTGGCTGGACCTGAGTTTAGGCGCTCAAGGCCCGTGGACCGAGCTTCCCTGGCCG CATGAGAAGGTCGATGCAGCCCTGTGCACGGAAAAGTCTCTCGGCCCCAACTCGTGTTCC GCCAGCGGCCTCGGCCTGTACATCGTCCACGGCCCCCATGTCTACTGCTACAAAGACGTG GAGAAACTGGTCTCGGCCAAGGCGCTGCCCCAGCCCCAGAGCGTAAACAGCCTGCTGGGC TGCCATCGGTCTCGGGGCTCCTGATGCGAGCCTGGCCCAGCTCCTCCTCCAGGCTTTCCT TGCAATGAAGCCAGAGGGCTTCCTGGCTTGATCAAAGCTGTAAATCAACCATATGGTCTA ATAAAAAATGAACGATAACAACAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCTGTGGCCCCCCCAGCTCATCATGGCTCGGGCGCTGGGAACAGTGGGGGCACCGTGG CTGTTGGGGCTCTGCTGCTCTCTGGCCATCGCCCACCCTCTTTCTCTGACTGCTGGCCCT AAGCACGGAGCTGAAGGCAGGAATGAGTCCAAGCCGGACCCAGACGTGACCGAACGCTGC TCGGATGGCTGGGGCTTCGACGCCAGCACCCTGGATGAGCACGGGGCTATGCTGTTTTTT AAAGGGCCGTCTGTGTGGGCGGGTCAAAACTGGACCCGGGGGTTAATCTCAGAGAGGTGG AAAAACGCCCCCAGCTCCGTGGACGCCGCCTTCCGCCGTGGTCACGACAGAGTCTTTCTC ATCCAGGGGGACAAGGTCTGGGTCTACCCTCCAGAGAAGGAGAAAGAAAATCCAAGGTCG CTCCAAGAGGAGTTTCCTGGAGTCCCATCCCCACTGGATGCTGCAGTGGAATGTCACCGT GGAGAATGCCAAGATGAGGGCGTCCTCTTCTTCCAAGGCACCCACACCTGGTTCTGGGAC TCCACGACAAAAACCACAAAGGAGCGCCTCTGGCCGGCCGTGGGCAACTGCTCCTCCGCC ATGCGATGGATCAGCCGCTACTACTGCTTCCGGGGTAACCAGTTCCTGCGCTTTGACCCT GTCACGGGACATGTGGATCCCAAATACCCTCGGGATGTCCGCGACTACTTCATGTCCTGC CCGGGCAGAGGCCATGCACACAGGAACGCAACCCACCGTGGGGATGACCGCTGTAGCCCA GACCTGGTCTTGACTGCACTGCTGTCTGACAACCACGGTGCCACCTACGCCTTCCGTGGG ACCCACTACTGGCGTCTGGACACCAGCCGGGACGGGTGGCACAGCTGGCCCATTGACCAT CAGTGGTCCCACGGTCCTTCGGCCGTGGATGCTGCCTTTTCCTGGGATGACAAGCTCTAT CTGATCCAGGGCACCCAGGTCTATATCTTCCTGACAAAGGCGGGCTACACCCTGGTAGAC AATTACCCAAAGCAGCTGGAGAAGGAGCTCGGGAGCCCTCACGGCATCAGCCTTGACGCT GTGGATGCGACCTTTGTCTGTCCTGGGACGTCTCGGCTCCACGTCATGGCAGGACGGAAG CTGTGGTGGCTGGACCTGAGTTTAGGCGCTCAAGGCCCGTGGACCGAGCTTCCCTGGCCG CATGAGAAGGTCGATGCAGCCCTGTGCACGGAAAAGTCTCTCGGCCCCAACTCGTGTTCC GCCAGCGGCCTCGGCCTGTACATCGTCCACGGCCCCCATGTCTACTGCTACAAAGACGTG GAGAAACTGGTCTCGGCCAAGGCGCTGCCCCAGCCCCAGAGCGTAAACAGCCTGCTGGGC TGCCATCGGTCTCGGGGCTCCTGATGCGAGCCTGGCCCAGCTCCTCCTCCAGGCTTTCCT TGCAATGAAGCCAGAGGGCTTCCTGGCTTGATCAAAGCTGTAAATCAACCATATGGTCTA ATAAAAAATGAACGATAACAACAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1130-1249, - strand, RNAz p=0.587951 | |
| 1290-1409, - strand, RNAz p=0.966813 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1130-1249, - strand, RNAz p=0.587951 | |
| 1290-1409, - strand, RNAz p=0.966813 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 233-367, gnl|bosTau2|chr15 (28712792-28712658) | |
| 233-367, gnl|canFam2|chr21 (32945613-32945795) | |
| 233-367, gnl|echTel1|scaffold_311672 (54021-54205) | |
| 233-367, gnl|hg17|chr11 (6417915-6418099) | |
| 233-367, gnl|Hg17|chr11 (6418105-6417970) | |
| 233-367, gnl|loxAfr1|scaffold_86018 (1544-1726) | |
| 233-367, gnl|mm7|chr7 (101655633-101655805) | |
| 233-367, gnl|Mm7|chr7 (101655811-101655680) | |
| 233-367, gnl|monDom2|scaffold_43 (18717725-18717509) | |
| 233-367, gnl|panTro1|chr9 (6560494-6560678) | |
| 233-367, gnl|rheMac2|chr14 (65763592-65763408) | |
| 233-367, gnl|rn3|chr1 (163421582-163421755) | |
| 515-731, gnl|bosTau2|chr15 (28710201-28709985) | |
| 515-731, gnl|canFam2|chr21 (32942927-32943089) | |
| 515-731, gnl|danRer3|chrNA (106057478-106057639) | |
| 515-731, gnl|echTel1|scaffold_311672 (51164-51326) | |
| 515-731, gnl|fr1|chrUn (19600184-19600331) | |
| 515-731, gnl|galGal2|chr1 (188033674-188033513) | |
| 515-731, gnl|hg17|chr11 (6415227-6415389) | |
| 515-731, gnl|Hg17|chr11 (6415461-6415245) | |
| 515-731, gnl|mm7|chr7 (101651862-101652024) | |
| 515-731, gnl|Mm7|chr7 (101652096-101651880) | |
| 515-731, gnl|monDom2|scaffold_43 (18718669-18718510) | |
| 515-731, gnl|panTro1|chr9 (6557810-6557972) | |
| 515-731, gnl|rheMac2|chr14 (65766267-65766105) | |
| 515-731, gnl|rn3|chr1 (163418720-163418882) | |
| 515-731, gnl|tetNig1|chr3 (3616250-3616405) | |
| 840-970, gnl|bosTau2|chr15 (28704917-28704787) | |
| 840-970, gnl|canFam2|chr21 (32938022-32938153) | |
| 840-970, gnl|danRer3|chrNA (106052867-106052998) | |
| 840-970, gnl|dasNov1|scaffold_266426 (1097-966) | |
| 840-970, gnl|echTel1|scaffold_311672 (46418-46549) | |
| 840-970, gnl|fr1|chrUn (19599769-19599894) | |
| 840-970, gnl|hg17|chr11 (6409685-6409816) | |
| 840-970, gnl|Hg17|chr11 (6409822-6409692) | |
| 840-970, gnl|loxAfr1|scaffold_4210 (132489-132620) | |
| 840-970, gnl|mm7|chr7 (101648739-101648870) | |
| 840-970, gnl|Mm7|chr7 (101648876-101648746) | |
| 840-970, gnl|monDom2|scaffold_43 (18722696-18722569) | |
| 840-970, gnl|oryCun1|scaffold_23649 (5387-5518) | |
| 840-970, gnl|panTro1|chr9 (6552249-6552380) | |
| 840-970, gnl|rheMac2|chr14 (65771804-65771673) | |
| 840-970, gnl|rn3|chr1 (163415699-163415830) | |
| 840-970, gnl|tetNig1|chr3 (3615836-3615979) | |
| 1130-1477, gnl|bosTau2|chr15 (28704427-28704080) | |
| 1130-1477, gnl|Hg17|chr11 (6409279-6408849) | |
| 1130-1477, gnl|Mm7|chr7 (101648365-101648026) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 233-367, gnl|bosTau2|chr15 (28712792-28712658) | |
| 233-367, gnl|canFam2|chr21 (32945613-32945795) | |
| 233-367, gnl|echTel1|scaffold_311672 (54021-54205) | |
| 233-367, gnl|hg17|chr11 (6417915-6418099) | |
| 233-367, gnl|Hg17|chr11 (6418105-6417970) | |
| 233-367, gnl|loxAfr1|scaffold_86018 (1544-1726) | |
| 233-367, gnl|mm7|chr7 (101655633-101655805) | |
| 233-367, gnl|Mm7|chr7 (101655811-101655680) | |
| 233-367, gnl|monDom2|scaffold_43 (18717725-18717509) | |
| 233-367, gnl|panTro1|chr9 (6560494-6560678) | |
| 233-367, gnl|rheMac2|chr14 (65763592-65763408) | |
| 233-367, gnl|rn3|chr1 (163421582-163421755) | |
| 515-731, gnl|bosTau2|chr15 (28710201-28709985) | |
| 515-731, gnl|canFam2|chr21 (32942927-32943089) | |
| 515-731, gnl|danRer3|chrNA (106057478-106057639) | |
| 515-731, gnl|echTel1|scaffold_311672 (51164-51326) | |
| 515-731, gnl|fr1|chrUn (19600184-19600331) | |
| 515-731, gnl|galGal2|chr1 (188033674-188033513) | |
| 515-731, gnl|hg17|chr11 (6415227-6415389) | |
| 515-731, gnl|Hg17|chr11 (6415461-6415245) | |
| 515-731, gnl|mm7|chr7 (101651862-101652024) | |
| 515-731, gnl|Mm7|chr7 (101652096-101651880) | |
| 515-731, gnl|monDom2|scaffold_43 (18718669-18718510) | |
| 515-731, gnl|panTro1|chr9 (6557810-6557972) | |
| 515-731, gnl|rheMac2|chr14 (65766267-65766105) | |
| 515-731, gnl|rn3|chr1 (163418720-163418882) | |
| 515-731, gnl|tetNig1|chr3 (3616250-3616405) | |
| 840-970, gnl|bosTau2|chr15 (28704917-28704787) | |
| 840-970, gnl|canFam2|chr21 (32938022-32938153) | |
| 840-970, gnl|danRer3|chrNA (106052867-106052998) | |
| 840-970, gnl|dasNov1|scaffold_266426 (1097-966) | |
| 840-970, gnl|echTel1|scaffold_311672 (46418-46549) | |
| 840-970, gnl|fr1|chrUn (19599769-19599894) | |
| 840-970, gnl|hg17|chr11 (6409685-6409816) | |
| 840-970, gnl|Hg17|chr11 (6409822-6409692) | |
| 840-970, gnl|loxAfr1|scaffold_4210 (132489-132620) | |
| 840-970, gnl|mm7|chr7 (101648739-101648870) | |
| 840-970, gnl|Mm7|chr7 (101648876-101648746) | |
| 840-970, gnl|monDom2|scaffold_43 (18722696-18722569) | |
| 840-970, gnl|oryCun1|scaffold_23649 (5387-5518) | |
| 840-970, gnl|panTro1|chr9 (6552249-6552380) | |
| 840-970, gnl|rheMac2|chr14 (65771804-65771673) | |
| 840-970, gnl|rn3|chr1 (163415699-163415830) | |
| 840-970, gnl|tetNig1|chr3 (3615836-3615979) | |
| 1130-1477, gnl|bosTau2|chr15 (28704427-28704080) | |
| 1130-1477, gnl|Hg17|chr11 (6409279-6408849) | |
| 1130-1477, gnl|Mm7|chr7 (101648365-101648026) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (13.1418) | |
| fli (0.608643) | |
| eli (0.151814) |