Non-Coding RNA Search

Ss1.1-Liv1-LVR010082D10.5

Sequence:


               
               AGAGCTCTGCCAAAATGCAGCGCTCACCACACCCCCTCATGCTATTTCTTCTCCTGGCAT
CCGTGTGTGGCAAGCATGGCCTGGTGGGCCAGCCCGTTGATGGTGGGGAGGACCCCAAGT
CTGCAGACCCCCGGTGGGGGCAAATGAAGAGCAGAAACCAAAGCAGGCCCCTCCTCCCCA
CTGACTTCCACAAGGACACAGTCACCAATGAGTGGATTGCAGATGGAGAGGAGGACGAGG
ACTACCTGGACCTGGAGAAGATCTTTGGGGATGATGACGACTACATTGACATCGTGGATG
CAGTCTCGCCTGCAGACCCCATGGCCAGTGCAGGGAATGTGCTCCAGCTCTTCCCAGGCA
AGAGCCGCATCCAGAGACTGAACATTCTCAATGCCAAGTTCGCCTTCAACCTCTACCGGG
CACTGAAGGAGCAGGCCAGTGCCTCAGACAACATCTTCCTGGCGCCTGTGGGCATCTCCA
CGGCCATGGGCATGCTCTGCCTGGGCCTGCGCGGGGAGACCCACAAGCAAGTGCATGCGG
CCCTGCACTTCACGGACTTTGTCAATGCCAGCAGCAAGTATGAGCTGGGCACTATCCACA
ACCTCTTCCGGAAGCTGACCCACCGCCTCTTCCGGAGGGACTTCGGGTACACGCTGCGGG
CTGTCAACGACCTTTACGTCCAGAGGCAGTTCCCCATTCTGGATGACTTCAGAACCAAGG
TCAGACAGTACTACTTTGCCGAGGTCCAGGCGGCCGACTTTGCAGACCCTGCCTTCCTAT
CGGAGACTAACCACCACGTTGCAAGACTCACCAAGGGCCTCATAAAGGACACTCTGCAGG
ACATAGACCCTGCGACTCAGATGATGATCCTGAACTGCATCTACTTTAAAGGGTCTTGGG
TGAATAAATTCCCAGTGGAAATGACCCACAACCACAACTTCAGGCTGAATGAGCGAGAGG
TGGTCAAGGTCCCCATGATGCAGACCAAAGGGGCCTTCCTGGCGGCAAGTGACCAGGAGC
TGGACTGTGAGATCCTGCAGCTGGATTATGTGGGGGGCGTCAGCATGCTGGTCGTGGTCC
CGCACAAGCTGTCTGGGATGAAGACCCTGGAGGCGCAGCTGACACCCCAGGTGGTGGAGA
AATGGCAGAAGAGCATGACAAATAGGACACGGGAGGTGCTCCTGCCTAAGTTCAAGCTGG
AGAAGGACTACAACCTGGTGGAGGCCCTGCGATCCGTGGGGGTCACAGCATTGTTTGACA
GGAACAGCAACTTGACAGGGATTTCAGACCAGAGGATTGCCATTGACCTGTTCAAGCACC
ACGGCACCATCACAGTGAATGAGGAGGGCACCCAGGCTGCAGCCGTAACCACTGTGGGGT
TCATGCCGCTGTCCACCCAAGCCCGCTTCAGCGTTGACCGGCCCTTCCTGTTCCTCATCC
ACGAGCACCGCACCGGCTGCCTGCTCTTTATGGGCAGAGTCGCCAACCCCGCCAGGTCTT
AAAAGTGGTGAGGCATGGGCATCTTGAGTGTTCTGGGGCACTCTGCAATTCTGTTTCCAT
TCCAACAACAAGAATGAGGCGTTCTGGCACTGAGACTCCGCAGCTAACCACCTTTCCACG
AGACACTGACAAGGGACCTAGAAGCTCGCTGCACTGGACTCAATTCTGCACAGTGAATGG
CGTATCAGCTCGCAGAAGTCAGCGCACCTGTAATACAGCCGTCACCTGGAGGGCAACAGT
ACAGCCTACCAGCTTCCCCCAGCCCCTCATAGCAATCTTGGTGCCCCAGGCCCCACCAGT
GCACCTCCGGCTGTTACCGGCAGCCCCTCTCCAGCAGGGCTCCTCCCGACACAGCTCTCA
GAGAGAAGCTGCATGATCACTGGCAGAGTGGTGACAGCCTGCCCACCCCAAGGTCCAAGA
GTGGACTGTCCTCCTGACATTTGGGTGCCCAGCACCTTGGGCTCAACCCTTTCTAGGCCC
AGCCTCCAGAGTTGATGCCAGATGTCTCTGCACCCTGCTGTCCCCCATGGGTGCCTGGAG
GGCAGTGTGTACATGTAGCCTGGCCTTCTACCCTAGAGCTGAATAAATACCGCCACTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCTCTGCCAAAATGCAGCGCTCACCACACCCCCTCATGCTATTTCTTCTCCTGGCAT
CCGTGTGTGGCAAGCATGGCCTGGTGGGCCAGCCCGTTGATGGTGGGGAGGACCCCAAGT
CTGCAGACCCCCGGTGGGGGCAAATGAAGAGCAGAAACCAAAGCAGGCCCCTCCTCCCCA
CTGACTTCCACAAGGACACAGTCACCAATGAGTGGATTGCAGATGGAGAGGAGGACGAGG
ACTACCTGGACCTGGAGAAGATCTTTGGGGATGATGACGACTACATTGACATCGTGGATG
CAGTCTCGCCTGCAGACCCCATGGCCAGTGCAGGGAATGTGCTCCAGCTCTTCCCAGGCA
AGAGCCGCATCCAGAGACTGAACATTCTCAATGCCAAGTTCGCCTTCAACCTCTACCGGG
CACTGAAGGAGCAGGCCAGTGCCTCAGACAACATCTTCCTGGCGCCTGTGGGCATCTCCA
CGGCCATGGGCATGCTCTGCCTGGGCCTGCGCGGGGAGACCCACAAGCAAGTGCATGCGG
CCCTGCACTTCACGGACTTTGTCAATGCCAGCAGCAAGTATGAGCTGGGCACTATCCACA
ACCTCTTCCGGAAGCTGACCCACCGCCTCTTCCGGAGGGACTTCGGGTACACGCTGCGGG
CTGTCAACGACCTTTACGTCCAGAGGCAGTTCCCCATTCTGGATGACTTCAGAACCAAGG
TCAGACAGTACTACTTTGCCGAGGTCCAGGCGGCCGACTTTGCAGACCCTGCCTTCCTAT
CGGAGACTAACCACCACGTTGCAAGACTCACCAAGGGCCTCATAAAGGACACTCTGCAGG
ACATAGACCCTGCGACTCAGATGATGATCCTGAACTGCATCTACTTTAAAGGGTCTTGGG
TGAATAAATTCCCAGTGGAAATGACCCACAACCACAACTTCAGGCTGAATGAGCGAGAGG
TGGTCAAGGTCCCCATGATGCAGACCAAAGGGGCCTTCCTGGCGGCAAGTGACCAGGAGC
TGGACTGTGAGATCCTGCAGCTGGATTATGTGGGGGGCGTCAGCATGCTGGTCGTGGTCC
CGCACAAGCTGTCTGGGATGAAGACCCTGGAGGCGCAGCTGACACCCCAGGTGGTGGAGA
AATGGCAGAAGAGCATGACAAATAGGACACGGGAGGTGCTCCTGCCTAAGTTCAAGCTGG
AGAAGGACTACAACCTGGTGGAGGCCCTGCGATCCGTGGGGGTCACAGCATTGTTTGACA
GGAACAGCAACTTGACAGGGATTTCAGACCAGAGGATTGCCATTGACCTGTTCAAGCACC
ACGGCACCATCACAGTGAATGAGGAGGGCACCCAGGCTGCAGCCGTAACCACTGTGGGGT
TCATGCCGCTGTCCACCCAAGCCCGCTTCAGCGTTGACCGGCCCTTCCTGTTCCTCATCC
ACGAGCACCGCACCGGCTGCCTGCTCTTTATGGGCAGAGTCGCCAACCCCGCCAGGTCTT
AAAAGTGGTGAGGCATGGGCATCTTGAGTGTTCTGGGGCACTCTGCAATTCTGTTTCCAT
TCCAACAACAAGAATGAGGCGTTCTGGCACTGAGACTCCGCAGCTAACCACCTTTCCACG
AGACACTGACAAGGGACCTAGAAGCTCGCTGCACTGGACTCAATTCTGCACAGTGAATGG
CGTATCAGCTCGCAGAAGTCAGCGCACCTGTAATACAGCCGTCACCTGGAGGGCAACAGT
ACAGCCTACCAGCTTCCCCCAGCCCCTCATAGCAATCTTGGTGCCCCAGGCCCCACCAGT
GCACCTCCGGCTGTTACCGGCAGCCCCTCTCCAGCAGGGCTCCTCCCGACACAGCTCTCA
GAGAGAAGCTGCATGATCACTGGCAGAGTGGTGACAGCCTGCCCACCCCAAGGTCCAAGA
GTGGACTGTCCTCCTGACATTTGGGTGCCCAGCACCTTGGGCTCAACCCTTTCTAGGCCC
AGCCTCCAGAGTTGATGCCAGATGTCTCTGCACCCTGCTGTCCCCCATGGGTGCCTGGAG
GGCAGTGTGTACATGTAGCCTGGCCTTCTACCCTAGAGCTGAATAAATACCGCCACTTTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47678677|emb|CAG30459.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47678677|emb|CAG30459.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-196, - strand, RNAz p=0.999983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-196, - strand, RNAz p=0.999983

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-892, gnl|bosTau2|chr17 (45265158-45264266)
               

               
               3-892, gnl|Hg17|chr22 (19458143-19459044)
               

               
               3-892, gnl|Mm7|chr16 (16886113-16886870)
               


               
               1310-1624, gnl|bosTau2|chr17 (45261566-45261259)
               

               
               1310-1624, gnl|Hg17|chr22 (19465716-19465972)
               

               
               1310-1624, gnl|Mm7|chr16 (16892585-16892842)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-892, gnl|bosTau2|chr17 (45265158-45264266)
               

               
               3-892, gnl|Hg17|chr22 (19458143-19459044)
               

               
               3-892, gnl|Mm7|chr16 (16886113-16886870)
               


               
               1310-1624, gnl|bosTau2|chr17 (45261566-45261259)
               

               
               1310-1624, gnl|Hg17|chr22 (19465716-19465972)
               

               
               1310-1624, gnl|Mm7|chr16 (16892585-16892842)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cli (1.98655)
               

               
               fli (1.0144)
               

               
               eli (0.303628)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.98655)
               

               
               fli (1.0144)
               

               
               eli (0.303628)

	3-892, gnl\|bosTau2\|chr17 (45265158-45264266)
	3-892, gnl\|Hg17\|chr22 (19458143-19459044)
	3-892, gnl\|Mm7\|chr16 (16886113-16886870)

	1310-1624, gnl\|bosTau2\|chr17 (45261566-45261259)
	1310-1624, gnl\|Hg17\|chr22 (19465716-19465972)
	1310-1624, gnl\|Mm7\|chr16 (16892585-16892842)