Non-Coding RNA Search

Ss1.1-Liv1-LVR010082D12.5

Sequence:


               
               ACGGGGGAGTGACCTCGCCGCCCGGCGCCATGGGGGCTTCGGACCCGGAAGTGGCGCCCT
GGGCTCGCGGCGGTGCCGCGGGAATGGCGGGAGCCGGAGCAGGAGCAGGAGCTCGCGGCG
GAGCGGCGGCGGGGGTCGAGGCCCGGGCTCGCGACCCGCCGCCCGCACACCGCGCGCACC
CGCGCCACCCTCGGCCTGCGGCGCAACCCTCCGCCCGCAGGATGGACGGCGCGTCCGGGG
GCCTGGGCTCCGGGGACAACGCCCCGACCACCGAGGCTCTTTTCGTGGCGCTGGGTGCAG
GAGTGACGGCTCTCAGTCACCCGCTGCTCTACGTGAAGCTGCTCATCCAGGTGGGTCATG
AGCCGATGCCCCCCACCATTGGGACCAATGTGTTGGGGAGGAAGGTCCTCTACCTGCCGA
GCTTCTTCACCTACGCCAAGTACATTGTGCAAGTGGATGGGAAAATAGGGCTGTTCCGAG
GCCTGAGCCCCCGGCTGATGTCCAACGCCCTCTCCACCGTTACCCGGGGCAGCATGAAGA
AGGTTTTCCCTCCCGATGAGATCGAGCAGGTGTCCAACAAGGATGACATGAAGACTTCTC
TGAAGAAGGTGGTGAAGGAGACCTCCTATGAGATGATGATGCAGTGCGTGTCCCGCATGC
TGGCCCACCCCCTGCATGTCATCTCAATGCGCTGCATGGTCCAGTTTGTGGGACGGGAGG
CCAAGTACAGCGGCGTGTTGAGCTCCATTGGGAAGATTTTCAAAGAAGAGGGGCTGCTGG
GATTCTTTGTTGGCTTAATCCCTCACCTCCTGGGAGATGTGGTTTTCTTGTGGGGCTGTA
ACCTGCTGGCCCACTTCATCAATGCCTACCTGGTGGATGACAGCGTGAGTGACACCCCAG
GGGGGCTGGGGAACGACCAGAATCCAGGTTCCCAGTTCAGCCAGGCCCTGGCCATCCGCA
GCTACACCAAATTTGTGATGGGGATCGCAGTGAGCATGCTGACCTACCCCTTCCTGCTGG
TTGGTGACCTCATGGCTGTGAACAACTGCGGGCTGCAGGCCGGGCTCCCCCCTTACTCCC
CAGTGTTCAAGTCCTGGATCCACTGCTGGAAGTACCTGAGCGTGCAGGGCCAGCTCTTCC
GTGGCTCCAGTCTGCTTTTCCGCCGGGTGTCATCAGGATCGTGTTTTGCCCTGGAGTAAC
CTGAATCACCAAGAAAAAAAAAAAGGCCTGATCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGGGGAGTGACCTCGCCGCCCGGCGCCATGGGGGCTTCGGACCCGGAAGTGGCGCCCT
GGGCTCGCGGCGGTGCCGCGGGAATGGCGGGAGCCGGAGCAGGAGCAGGAGCTCGCGGCG
GAGCGGCGGCGGGGGTCGAGGCCCGGGCTCGCGACCCGCCGCCCGCACACCGCGCGCACC
CGCGCCACCCTCGGCCTGCGGCGCAACCCTCCGCCCGCAGGATGGACGGCGCGTCCGGGG
GCCTGGGCTCCGGGGACAACGCCCCGACCACCGAGGCTCTTTTCGTGGCGCTGGGTGCAG
GAGTGACGGCTCTCAGTCACCCGCTGCTCTACGTGAAGCTGCTCATCCAGGTGGGTCATG
AGCCGATGCCCCCCACCATTGGGACCAATGTGTTGGGGAGGAAGGTCCTCTACCTGCCGA
GCTTCTTCACCTACGCCAAGTACATTGTGCAAGTGGATGGGAAAATAGGGCTGTTCCGAG
GCCTGAGCCCCCGGCTGATGTCCAACGCCCTCTCCACCGTTACCCGGGGCAGCATGAAGA
AGGTTTTCCCTCCCGATGAGATCGAGCAGGTGTCCAACAAGGATGACATGAAGACTTCTC
TGAAGAAGGTGGTGAAGGAGACCTCCTATGAGATGATGATGCAGTGCGTGTCCCGCATGC
TGGCCCACCCCCTGCATGTCATCTCAATGCGCTGCATGGTCCAGTTTGTGGGACGGGAGG
CCAAGTACAGCGGCGTGTTGAGCTCCATTGGGAAGATTTTCAAAGAAGAGGGGCTGCTGG
GATTCTTTGTTGGCTTAATCCCTCACCTCCTGGGAGATGTGGTTTTCTTGTGGGGCTGTA
ACCTGCTGGCCCACTTCATCAATGCCTACCTGGTGGATGACAGCGTGAGTGACACCCCAG
GGGGGCTGGGGAACGACCAGAATCCAGGTTCCCAGTTCAGCCAGGCCCTGGCCATCCGCA
GCTACACCAAATTTGTGATGGGGATCGCAGTGAGCATGCTGACCTACCCCTTCCTGCTGG
TTGGTGACCTCATGGCTGTGAACAACTGCGGGCTGCAGGCCGGGCTCCCCCCTTACTCCC
CAGTGTTCAAGTCCTGGATCCACTGCTGGAAGTACCTGAGCGTGCAGGGCCAGCTCTTCC
GTGGCTCCAGTCTGCTTTTCCGCCGGGTGTCATCAGGATCGTGTTTTGCCCTGGAGTAAC
CTGAATCACCAAGAAAAAAAAAAAGGCCTGATCATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NZJ7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NZJ7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               347-466, - strand, RNAz p=0.518635

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               347-466, - strand, RNAz p=0.518635

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               228-1226, gnl|bosTau2|chr17 (21911651-21912629)
               

               
               228-1226, gnl|Hg17|chr6 (139013824-139013026)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               228-1226, gnl|bosTau2|chr17 (21911651-21912629)
               

               
               228-1226, gnl|Hg17|chr6 (139013824-139013026)

Expressed library(ies): 28 entry(ies)

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Expressed library(ies): 28 entry(ies)

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               cty (0.936719)
               

               
               ebs (0.828108)
               

               
               cov (0.528611)
               

               
               nco (0.485201)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               jca (0.34188)
               

               
               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.936719)
               

               
               ebs (0.828108)
               

               
               cov (0.528611)
               

               
               nco (0.485201)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               jca (0.34188)
               

               
               cki (0.330469)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               cly (0.241284)
               

               
               med (0.232504)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               jej (0.0989218)

	228-1226, gnl\|bosTau2\|chr17 (21911651-21912629)
	228-1226, gnl\|Hg17\|chr6 (139013824-139013026)

	cty (0.936719)
	ebs (0.828108)
	cov (0.528611)
	nco (0.485201)
	elu (0.385356)
	eru (0.360144)
	jca (0.34188)
	cki (0.330469)
	hyp (0.285673)
	cga (0.279096)
	hlv (0.278513)
	fce (0.271592)
	nmm (0.265604)
	cly (0.241284)
	med (0.232504)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	col (0.195008)
	cut (0.169924)
	fhi (0.169578)
	cje (0.165235)
	cli (0.152812)
	cag (0.151194)
	cst (0.140036)
	eep (0.122564)
	clu (0.119646)
	jej (0.0989218)