Ss1.1-Liv1-LVR010082F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTGAAGATCTCTCAGTTAAGACCACAAGCAAAGGATGGTTTCTTGGGACTTCCAAAAA CTTAAAATCATGAAACCTCTATTACTGCTACTATTGTGTGTTTTTATAATTAAGGCCCAA GCTGCCATTGACTACGATGAGGACGAAGATGGCAGACCTAAGGTTCATGTGGATGCCCGT GGTCATCGGCCCTATGACAAGAGGAGGGAAGAGGCTCCCAGCCTGAGACCTGTCGCCCCT CCCATCAGTGCAGGTGGCTATCAACCTCGTCCAGCCAAAGTAGCTATTGGCCAGAAGAAA GTGGAGAGAAAACCCCCTGATGCTGGGGGCTGCCTGCATGCTGATCCGGACCTGGGTGTG TTGTGTCCTACAGGATGTCAGTTGCAAGATACTCTGCTGAAACAGGAAAGACCAATCAAA ACCAGTATAGAAGAGCTGAATAGTAACATAGACTCTGTTTCCCAGTCCTCTTCTTCCACC TTTCAGTACATGACTCTGCTGAAACGCCTGTGGAAAGACAGGCAGAAGCAAAGAAGAGAT AATGAAAATGTCATAAATGAGTTCTCGTCCGAGCTGGAAAAGCACCAGCTCTATATAGAT GAAACTGTGAACAGCAACATCCCCACTAACTTGCGTGTGCTCCGTGCCATCCTGGAAAAC TTGAGAAGCAAAATACAGAAATTAGAATCGGATGTCTTGGCTCAGATGGAATACTGCCGT ACTCCATGTACCGTCACTTGCAATATTCCTGTGGTGTCTGGCAAAGAATGTGAGGAAATT ATCAGGAATGGAGGCGAAACATCTGAAATGTATCTCATTCAGCCTAGTGATTCCATCGAA CCCTATAGAGTGTACTGTGATATGAAGACAGAAAGAGGAGGATGGACAGTAATTCAGAAC CGTCAAGACGGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAAGCAAGGATTTGGA AATATTGCAACCAGTGCAGATGGGAAAAAATATTGTGGCATACCAGGTGAGTATTGGCTT GGAAATGATAAAATTAGCCAGCTTACCAGGATGGGACCCACAAAGCTTTTGATCGAAATG GAGGACTGGGAAGGAGGCAAGGTGAAGGCAATCTACGAAGGATTCACTGTGCAGAACGAA GCCAATAAATACCAGATCTCGCTGAGCAAATACAAGGGAACAGCTGGCAACGCCCTCTTG GAAGGAGCCTCTCAACTGGTGGGAGAAAACCGAACCATGACAATCCACAACAGCATGTTC TTCAGCACCTACGACAGAGACAACGACGGCTGGAAAACGACAGATCCCAGAAAGCAGTGT TCTAAAGAGGATGGTGGTGGATGGTGGTATAACAGGTGTCATGCAGCCAATCCAAATGGC AGGTACTACTGGGGCGGATCTTACAGCTGGGACATGGCAAAGCATGGCACGGATGACGGA GTGGTGTGGATGAACTGGAAGGGGTCCTGGTACTCGATGAAGAAGATGTCGATGAAGATC AGGCCCTTCTTCCCAGAGCAATAGTCTCCCAAACATAGATTCTTCTTCTTCCACATGTAA CAATATTTTTGTATACCATGTCAACAGAGTTTTCTTGCCTACATTATATCCCCCTAAAGC TATCAAAACGTATAGTGGGTGTGTGAATTTTTGGAAAAAGTATCCAAGATAAACCACATT AAAAACAGCACATGGTTTTCTTTCATAGTCATCATTCCTATGGTGCAACCAAGAAATCAC TAACACAGGATCATTGTGGGCATGGTTCATGATTTCCATTCTGGTAGATCGTGAAAAGTT TCAAATCAGAAAGAGGAATTTTTTAGACTTGTGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTGAAGATCTCTCAGTTAAGACCACAAGCAAAGGATGGTTTCTTGGGACTTCCAAAAA CTTAAAATCATGAAACCTCTATTACTGCTACTATTGTGTGTTTTTATAATTAAGGCCCAA GCTGCCATTGACTACGATGAGGACGAAGATGGCAGACCTAAGGTTCATGTGGATGCCCGT GGTCATCGGCCCTATGACAAGAGGAGGGAAGAGGCTCCCAGCCTGAGACCTGTCGCCCCT CCCATCAGTGCAGGTGGCTATCAACCTCGTCCAGCCAAAGTAGCTATTGGCCAGAAGAAA GTGGAGAGAAAACCCCCTGATGCTGGGGGCTGCCTGCATGCTGATCCGGACCTGGGTGTG TTGTGTCCTACAGGATGTCAGTTGCAAGATACTCTGCTGAAACAGGAAAGACCAATCAAA ACCAGTATAGAAGAGCTGAATAGTAACATAGACTCTGTTTCCCAGTCCTCTTCTTCCACC TTTCAGTACATGACTCTGCTGAAACGCCTGTGGAAAGACAGGCAGAAGCAAAGAAGAGAT AATGAAAATGTCATAAATGAGTTCTCGTCCGAGCTGGAAAAGCACCAGCTCTATATAGAT GAAACTGTGAACAGCAACATCCCCACTAACTTGCGTGTGCTCCGTGCCATCCTGGAAAAC TTGAGAAGCAAAATACAGAAATTAGAATCGGATGTCTTGGCTCAGATGGAATACTGCCGT ACTCCATGTACCGTCACTTGCAATATTCCTGTGGTGTCTGGCAAAGAATGTGAGGAAATT ATCAGGAATGGAGGCGAAACATCTGAAATGTATCTCATTCAGCCTAGTGATTCCATCGAA CCCTATAGAGTGTACTGTGATATGAAGACAGAAAGAGGAGGATGGACAGTAATTCAGAAC CGTCAAGACGGTAGTGTTGACTTTGGCAGGAAATGGGATCCATATAAGCAAGGATTTGGA AATATTGCAACCAGTGCAGATGGGAAAAAATATTGTGGCATACCAGGTGAGTATTGGCTT GGAAATGATAAAATTAGCCAGCTTACCAGGATGGGACCCACAAAGCTTTTGATCGAAATG GAGGACTGGGAAGGAGGCAAGGTGAAGGCAATCTACGAAGGATTCACTGTGCAGAACGAA GCCAATAAATACCAGATCTCGCTGAGCAAATACAAGGGAACAGCTGGCAACGCCCTCTTG GAAGGAGCCTCTCAACTGGTGGGAGAAAACCGAACCATGACAATCCACAACAGCATGTTC TTCAGCACCTACGACAGAGACAACGACGGCTGGAAAACGACAGATCCCAGAAAGCAGTGT TCTAAAGAGGATGGTGGTGGATGGTGGTATAACAGGTGTCATGCAGCCAATCCAAATGGC AGGTACTACTGGGGCGGATCTTACAGCTGGGACATGGCAAAGCATGGCACGGATGACGGA GTGGTGTGGATGAACTGGAAGGGGTCCTGGTACTCGATGAAGAAGATGTCGATGAAGATC AGGCCCTTCTTCCCAGAGCAATAGTCTCCCAAACATAGATTCTTCTTCTTCCACATGTAA CAATATTTTTGTATACCATGTCAACAGAGTTTTCTTGCCTACATTATATCCCCCTAAAGC TATCAAAACGTATAGTGGGTGTGTGAATTTTTGGAAAAAGTATCCAAGATAAACCACATT AAAAACAGCACATGGTTTTCTTTCATAGTCATCATTCCTATGGTGCAACCAAGAAATCAC TAACACAGGATCATTGTGGGCATGGTTCATGATTTCCATTCTGGTAGATCGTGAAAAGTT TCAAATCAGAAAGAGGAATTTTTTAGACTTGTGGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 616-1450, - strand, RNAz p=0.747392 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 616-1450, - strand, RNAz p=0.747392 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr17 (2670901-2671041) | |
| 1-142, gnl|canFam2|chr15 (55241505-55242640) | |
| 1-142, gnl|dasNov1|scaffold_2284 (116057-117232) | |
| 1-142, gnl|echTel1|scaffold_316261 (41298-40157) | |
| 1-142, gnl|hg17|chr4 (155841115-155842253) | |
| 1-142, gnl|Hg17|chr4 (155841749-155841890) | |
| 1-142, gnl|loxAfr1|scaffold_967 (79063-80310) | |
| 1-142, gnl|mm7|chr3 (83155230-83154062) | |
| 1-142, gnl|Mm7|chr3 (83154515-83154365) | |
| 1-142, gnl|monDom2|scaffold_9 (25124251-25125490) | |
| 1-142, gnl|oryCun1|scaffold_197720 (55443-54311) | |
| 1-142, gnl|panTro1|chr3 (173205078-173206215) | |
| 1-142, gnl|rheMac2|chr5 (146763479-146764623) | |
| 1-142, gnl|rn3|chr2 (174725885-174724800) | |
| 160-355, gnl|bosTau2|chr17 (2673820-2674015) | |
| 160-355, gnl|Hg17|chr4 (155844562-155844757) | |
| 160-355, gnl|Mm7|chr3 (83151533-83151338) | |
| 537-766, gnl|bosTau2|chr17 (2675616-2675845) | |
| 537-766, gnl|canFam2|chr15 (55246678-55246923) | |
| 537-766, gnl|danRer3|chr1 (6640995-6640758) | |
| 537-766, gnl|dasNov1|scaffold_2284 (120836-121080) | |
| 537-766, gnl|echTel1|scaffold_288631 (42127-41882) | |
| 537-766, gnl|fr1|chrUn (321872936-321873246) | |
| 537-766, gnl|galGal2|chr4 (20915170-20915417) | |
| 537-766, gnl|hg17|chr4 (155846339-155846583) | |
| 537-766, gnl|Hg17|chr4 (155846348-155846577) | |
| 537-766, gnl|loxAfr1|scaffold_967 (84850-85094) | |
| 537-766, gnl|mm7|chr3 (83149798-83149554) | |
| 537-766, gnl|Mm7|chr3 (83149787-83149558) | |
| 537-766, gnl|monDom2|scaffold_9 (25133392-25133636) | |
| 537-766, gnl|oryCun1|scaffold_197720 (49302-49058) | |
| 537-766, gnl|panTro1|chr3 (173210302-173210546) | |
| 537-766, gnl|rheMac2|chr5 (146768680-146768924) | |
| 537-766, gnl|rn3|chr2 (174720698-174720454) | |
| 537-766, gnl|xenTro1|scaffold_93 (752477-752233) | |
| 879-1017, gnl|bosTau2|chr17 (2640833-2640971) | |
| 879-1017, gnl|Hg17|chr4 (155847937-155848075) | |
| 879-1017, gnl|Mm7|chr3 (83148589-83148451) | |
| 1292-1820, gnl|bosTau2|chr17 (2642053-2642579) | |
| 1292-1820, gnl|Hg17|chr4 (155849175-155849723) | |
| 1292-1820, gnl|Mm7|chr3 (83147320-83146603) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr17 (2670901-2671041) | |
| 1-142, gnl|canFam2|chr15 (55241505-55242640) | |
| 1-142, gnl|dasNov1|scaffold_2284 (116057-117232) | |
| 1-142, gnl|echTel1|scaffold_316261 (41298-40157) | |
| 1-142, gnl|hg17|chr4 (155841115-155842253) | |
| 1-142, gnl|Hg17|chr4 (155841749-155841890) | |
| 1-142, gnl|loxAfr1|scaffold_967 (79063-80310) | |
| 1-142, gnl|mm7|chr3 (83155230-83154062) | |
| 1-142, gnl|Mm7|chr3 (83154515-83154365) | |
| 1-142, gnl|monDom2|scaffold_9 (25124251-25125490) | |
| 1-142, gnl|oryCun1|scaffold_197720 (55443-54311) | |
| 1-142, gnl|panTro1|chr3 (173205078-173206215) | |
| 1-142, gnl|rheMac2|chr5 (146763479-146764623) | |
| 1-142, gnl|rn3|chr2 (174725885-174724800) | |
| 160-355, gnl|bosTau2|chr17 (2673820-2674015) | |
| 160-355, gnl|Hg17|chr4 (155844562-155844757) | |
| 160-355, gnl|Mm7|chr3 (83151533-83151338) | |
| 537-766, gnl|bosTau2|chr17 (2675616-2675845) | |
| 537-766, gnl|canFam2|chr15 (55246678-55246923) | |
| 537-766, gnl|danRer3|chr1 (6640995-6640758) | |
| 537-766, gnl|dasNov1|scaffold_2284 (120836-121080) | |
| 537-766, gnl|echTel1|scaffold_288631 (42127-41882) | |
| 537-766, gnl|fr1|chrUn (321872936-321873246) | |
| 537-766, gnl|galGal2|chr4 (20915170-20915417) | |
| 537-766, gnl|hg17|chr4 (155846339-155846583) | |
| 537-766, gnl|Hg17|chr4 (155846348-155846577) | |
| 537-766, gnl|loxAfr1|scaffold_967 (84850-85094) | |
| 537-766, gnl|mm7|chr3 (83149798-83149554) | |
| 537-766, gnl|Mm7|chr3 (83149787-83149558) | |
| 537-766, gnl|monDom2|scaffold_9 (25133392-25133636) | |
| 537-766, gnl|oryCun1|scaffold_197720 (49302-49058) | |
| 537-766, gnl|panTro1|chr3 (173210302-173210546) | |
| 537-766, gnl|rheMac2|chr5 (146768680-146768924) | |
| 537-766, gnl|rn3|chr2 (174720698-174720454) | |
| 537-766, gnl|xenTro1|scaffold_93 (752477-752233) | |
| 879-1017, gnl|bosTau2|chr17 (2640833-2640971) | |
| 879-1017, gnl|Hg17|chr4 (155847937-155848075) | |
| 879-1017, gnl|Mm7|chr3 (83148589-83148451) | |
| 1292-1820, gnl|bosTau2|chr17 (2642053-2642579) | |
| 1292-1820, gnl|Hg17|chr4 (155849175-155849723) | |
| 1292-1820, gnl|Mm7|chr3 (83147320-83146603) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| lun (35.6659) | |
| eli (1.66996) | |
| fli (1.62305) | |
| cli (1.22249) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (35.6659) | |
| eli (1.66996) | |
| fli (1.62305) | |
| cli (1.22249) |