Ss1.1-Liv1-LVR010095B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTCAGCCGCAGAGAACTTTGTGAATGTATACGAGTGTGCAAGACGTGGTATAAATGGT GCTGTGACAAGAGACTTTGGACAAAAATTGACTTGAGTAGATGTAAGGCTATTGTACCCC AGGCTCTCAGTGGCATCATCAAGAGGCAGCCAGTCAGCCTCGACCTCAGTTGGACCAACA TCTCCAAAAAACAACTGACGTGGCTCGTCAACAGGCTGCCAGGGCTGAAAGACCTCCTCC TAGCAGGCTGTTCCTGGTCTGCAGTCTCTGCCCTCAGCACCTCCAGCTGCCCCCTTCTCA GGACCCTTGATCTTCGGTGGGCAGTAGGAATCAAGGACCCTCAAATTCGGGACTTGCTGA CTCCACCGGCTGATAAGCCAGGTCAGGACAATCGTAGCAAGCTCCGGAACATGACTGACT TCCGGCTGGCAGGCCTCGACATCACGGATGCCACGCTTCGCCTCATCATTCGCCACATGC CCCTCCTGTCTCGACTCGACCTCAGTCACTGCAGCCACCTGACGGATCAGTCCTCCAATC TGCTCACTGCTGTCGGGTCTTCCACTCGTTACTCCCTCACAGAGCTCAACATGGCAGGTT GCAATAAATTGACAGACCAGACCCTGATCTACCTACGGCGCATCGCCAACGTCACCTTGA TTGACCTTCGAGGATGCAAGCAGATCACTCGAAAAGCCTGCGAGCACTTCATCTCAGACT TATCCATCAACAGTCTCTACTGCCTGTCTGACGAGAAGCTGATACAGAAGATCAGCTAAG ACACACCCAGCCCAGACTGAGCAGGAACCCGATCTTCCCTGACCCCCCGCCGGGAGAGGT CTCTCTCCGCTCCTGCACAGGCTCTGGGGCCAGTGTCACACTCCCTCTCTGCTCTCCTGC CCCTTGAGCCCTTCCCTGACAGGCGGGGCAGAGAGGGTGGTGGACACCAGGCTTCCCTGC CCGCTCCTCTCCCTCCTAAGGAGAAGGGAGTGGCAGATTGATGCAAGGGGAAAGCACAGG CTGTGTGTTGTCACGGTGCCTGCTCGCTTGCTCTCCCACCTGCCTGCCCGCTCGCCTGCC GGGAGGCCAGGCTCTCAGTTTGGGGTGTCTGCGCAGCCGTCATCTGCACTGGGCCCTGGG GCCCCCCTCCCCATCCATGATCCCCAGCAGTGCCTGGTTCTGAGCAAACTCCCAGGGAAG AAAGCGGCCCTGTGTCCGTGGCCAGGTTCTCCTCGTGGTGTCCAGTGCGTGTCTCTCCTC CGTCACACTCTCCCGGCTTAGGCTGGAGGGGCCGGCAGCCCCAGGAACGCCAGACCCATG CAGATCACACTGGTGCTGTTGAGGTGTTGAAAACCTCTTGTCCGTGTCCGTGCTCTCCCT CTTCTCCTCTCCTTTTAGCTTGATCCTGTCCAAAACTCGCGGTAGTTCACATAATGAGGT TACCCCGCTCCAACTTTCCTGCTAGTTTCTATGAAGTCCGTGTTGCACTTATTGGGGTTG AGGCTCTTCAGAGGAGCTGGAACTGTCTACCCCAGGGACACCCCCATTTTATTGCTTCCC AGGCAGATTCTGAGACAGGCTCCATCTCCCTGTTCCCCTCCGTCTTTGGCCTGCCCTGCC CTTTTCCACCCTTTCCTTATTCCTACCTGAATAGGGCCTTCCCAGGATGTGTGTCCTCAG AGGGAGCAGCCTATCTCCCCCAGCTGGGGGGTCAGAGAACTGGGCCGGGTGCCCACCTGC CTCCCAGCAGGCTCCAGGCCCAGGGTGTAATACGGCCCCCGAAGCCCAGGCCTGTGTCTA GTCCCAGTGGCTCACTGATCTGGCACCTTCGGGGGTCGGGGTCCTGCTTAGAAGTCATTC ACCTGCCCTCTGCCTGCAGCTGTGGAAGGGGGTGTGCATGTGCCTCTGTGTGTGTGGCCG AGTGTGTTAAGCGTGTGTGTGGAGGGAAGGAGGGGAGCATGGCGTCTCCCGCTCCACCGC CCTGTGTCGAGCCCCATCAGCTGCCCCCTCTTACTTTGCATTGAACGGCCTGTCCAAAGA TCCTCTCTCTAGGGCAGCAGAGAGCTTTTTGCACTTTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAGGGGGGGGGCCCGTTTTAAAATTTCCTTGGGGGGGCCCAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTCAGCCGCAGAGAACTTTGTGAATGTATACGAGTGTGCAAGACGTGGTATAAATGGT GCTGTGACAAGAGACTTTGGACAAAAATTGACTTGAGTAGATGTAAGGCTATTGTACCCC AGGCTCTCAGTGGCATCATCAAGAGGCAGCCAGTCAGCCTCGACCTCAGTTGGACCAACA TCTCCAAAAAACAACTGACGTGGCTCGTCAACAGGCTGCCAGGGCTGAAAGACCTCCTCC TAGCAGGCTGTTCCTGGTCTGCAGTCTCTGCCCTCAGCACCTCCAGCTGCCCCCTTCTCA GGACCCTTGATCTTCGGTGGGCAGTAGGAATCAAGGACCCTCAAATTCGGGACTTGCTGA CTCCACCGGCTGATAAGCCAGGTCAGGACAATCGTAGCAAGCTCCGGAACATGACTGACT TCCGGCTGGCAGGCCTCGACATCACGGATGCCACGCTTCGCCTCATCATTCGCCACATGC CCCTCCTGTCTCGACTCGACCTCAGTCACTGCAGCCACCTGACGGATCAGTCCTCCAATC TGCTCACTGCTGTCGGGTCTTCCACTCGTTACTCCCTCACAGAGCTCAACATGGCAGGTT GCAATAAATTGACAGACCAGACCCTGATCTACCTACGGCGCATCGCCAACGTCACCTTGA TTGACCTTCGAGGATGCAAGCAGATCACTCGAAAAGCCTGCGAGCACTTCATCTCAGACT TATCCATCAACAGTCTCTACTGCCTGTCTGACGAGAAGCTGATACAGAAGATCAGCTAAG ACACACCCAGCCCAGACTGAGCAGGAACCCGATCTTCCCTGACCCCCCGCCGGGAGAGGT CTCTCTCCGCTCCTGCACAGGCTCTGGGGCCAGTGTCACACTCCCTCTCTGCTCTCCTGC CCCTTGAGCCCTTCCCTGACAGGCGGGGCAGAGAGGGTGGTGGACACCAGGCTTCCCTGC CCGCTCCTCTCCCTCCTAAGGAGAAGGGAGTGGCAGATTGATGCAAGGGGAAAGCACAGG CTGTGTGTTGTCACGGTGCCTGCTCGCTTGCTCTCCCACCTGCCTGCCCGCTCGCCTGCC GGGAGGCCAGGCTCTCAGTTTGGGGTGTCTGCGCAGCCGTCATCTGCACTGGGCCCTGGG GCCCCCCTCCCCATCCATGATCCCCAGCAGTGCCTGGTTCTGAGCAAACTCCCAGGGAAG AAAGCGGCCCTGTGTCCGTGGCCAGGTTCTCCTCGTGGTGTCCAGTGCGTGTCTCTCCTC CGTCACACTCTCCCGGCTTAGGCTGGAGGGGCCGGCAGCCCCAGGAACGCCAGACCCATG CAGATCACACTGGTGCTGTTGAGGTGTTGAAAACCTCTTGTCCGTGTCCGTGCTCTCCCT CTTCTCCTCTCCTTTTAGCTTGATCCTGTCCAAAACTCGCGGTAGTTCACATAATGAGGT TACCCCGCTCCAACTTTCCTGCTAGTTTCTATGAAGTCCGTGTTGCACTTATTGGGGTTG AGGCTCTTCAGAGGAGCTGGAACTGTCTACCCCAGGGACACCCCCATTTTATTGCTTCCC AGGCAGATTCTGAGACAGGCTCCATCTCCCTGTTCCCCTCCGTCTTTGGCCTGCCCTGCC CTTTTCCACCCTTTCCTTATTCCTACCTGAATAGGGCCTTCCCAGGATGTGTGTCCTCAG AGGGAGCAGCCTATCTCCCCCAGCTGGGGGGTCAGAGAACTGGGCCGGGTGCCCACCTGC CTCCCAGCAGGCTCCAGGCCCAGGGTGTAATACGGCCCCCGAAGCCCAGGCCTGTGTCTA GTCCCAGTGGCTCACTGATCTGGCACCTTCGGGGGTCGGGGTCCTGCTTAGAAGTCATTC ACCTGCCCTCTGCCTGCAGCTGTGGAAGGGGGTGTGCATGTGCCTCTGTGTGTGTGGCCG AGTGTGTTAAGCGTGTGTGTGGAGGGAAGGAGGGGAGCATGGCGTCTCCCGCTCCACCGC CCTGTGTCGAGCCCCATCAGCTGCCCCCTCTTACTTTGCATTGAACGGCCTGTCCAAAGA TCCTCTCTCTAGGGCAGCAGAGAGCTTTTTGCACTTTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAGGGGGGGGGCCCGTTTTAAAATTTCCTTGGGGGGGCCCAATT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 58-223, gnl|bosTau2|chr17 (28440041-28439876) | |
| 58-223, gnl|Hg17|chr12 (120341757-120341592) | |
| 58-223, gnl|Mm7|chr5 (122113875-122113710) | |
| 386-599, gnl|bosTau2|chr17 (28438987-28438774) | |
| 386-599, gnl|canFam2|chr26 (10758431-10758184) | |
| 386-599, gnl|danRer3|chrUn (13442917-13442694) | |
| 386-599, gnl|dasNov1|scaffold_4820 (6368-6125) | |
| 386-599, gnl|echTel1|scaffold_257283 (1220-1002) | |
| 386-599, gnl|fr1|chrUn (42012747-42012981) | |
| 386-599, gnl|galGal2|chr15 (5431864-5432103) | |
| 386-599, gnl|hg17|chr12 (120340373-120340619) | |
| 386-599, gnl|Hg17|chr12 (120340591-120340378) | |
| 386-599, gnl|loxAfr1|scaffold_67752 (3945-3699) | |
| 386-599, gnl|mm7|chr5 (122112652-122112896) | |
| 386-599, gnl|Mm7|chr5 (122112868-122112655) | |
| 386-599, gnl|monDom2|scaffold_97 (1594032-1594278) | |
| 386-599, gnl|oryCun1|scaffold_124276 (4340-4580) | |
| 386-599, gnl|panTro1|chrUn_random (16588838-16589084) | |
| 386-599, gnl|rheMac2|chr11 (122523103-122523349) | |
| 386-599, gnl|rn3|chr12 (34657810-34657566) | |
| 386-599, gnl|tetNig1|chr4 (1628811-1628586) | |
| 386-599, gnl|xenTro1|scaffold_501 (908494-908740) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 58-223, gnl|bosTau2|chr17 (28440041-28439876) | |
| 58-223, gnl|Hg17|chr12 (120341757-120341592) | |
| 58-223, gnl|Mm7|chr5 (122113875-122113710) | |
| 386-599, gnl|bosTau2|chr17 (28438987-28438774) | |
| 386-599, gnl|canFam2|chr26 (10758431-10758184) | |
| 386-599, gnl|danRer3|chrUn (13442917-13442694) | |
| 386-599, gnl|dasNov1|scaffold_4820 (6368-6125) | |
| 386-599, gnl|echTel1|scaffold_257283 (1220-1002) | |
| 386-599, gnl|fr1|chrUn (42012747-42012981) | |
| 386-599, gnl|galGal2|chr15 (5431864-5432103) | |
| 386-599, gnl|hg17|chr12 (120340373-120340619) | |
| 386-599, gnl|Hg17|chr12 (120340591-120340378) | |
| 386-599, gnl|loxAfr1|scaffold_67752 (3945-3699) | |
| 386-599, gnl|mm7|chr5 (122112652-122112896) | |
| 386-599, gnl|Mm7|chr5 (122112868-122112655) | |
| 386-599, gnl|monDom2|scaffold_97 (1594032-1594278) | |
| 386-599, gnl|oryCun1|scaffold_124276 (4340-4580) | |
| 386-599, gnl|panTro1|chrUn_random (16588838-16589084) | |
| 386-599, gnl|rheMac2|chr11 (122523103-122523349) | |
| 386-599, gnl|rn3|chr12 (34657810-34657566) | |
| 386-599, gnl|tetNig1|chr4 (1628811-1628586) | |
| 386-599, gnl|xenTro1|scaffold_501 (908494-908740) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| amn (0.835422) | |
| lnt (0.284616) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| lnt (0.284616) | |
| fty (0.17584) | |
| ill (0.175593) | |
| duo (0.172801) | |
| eep (0.122564) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cty (0.10408) |