Ss1.1-Liv1-LVR010096G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCAGGGCAAACAGCAGAGTCATCTACAGCCACAGGCCCCTTCCCCAGCTCCAGTTCACA GCTACCTCAGGCAGGGAGGTGGTGGCTGTCCTGTCCCCGACTGAGCCCGTGAGTGACACT CGAAGCAGAGGAGCCTGGAGCCATGCGGAGTCTCGGGACCCTGCTCCTGCTGCTGACCGC CTGCCTGGCCGTGAGCGCCAGCCCTGTGCTGACATTGCCCAATGACATCCAGGTGCAGGA GAACTTCGACCTGTCTAGGATCTACGGGAAATGGTTCCACGTGGCCGTGGGCTCCACCTG CCCCTGGCTGAAGAGGTTCAAGGACAAGATGACGATGGGCACGCTGATGCTGGGAGAGGG GGCGACGGAGAGGGAGATCAGCGTGACCAAGACTCACCGGAGGAAAGGTATCTGTGAGGT GATCTCTGGGGCTTATGAGAAAACAAGCACTGATGGAAAGTTCCTCTATCACAAATCCAA ATGGAACATCACCATGGAGTCCTATGTGGTCCACACCAACTATGATGAGTATGCCATATT TCTGACCAAGAAGTTCAGCCGCCGCCATGGACCAACCCTTACTGCCAAGCTCTACGGGCG GGAGCCGCAGCTTCGGGAAAGCCTGCTGGAGGAGTTCAGGGAGGTTGCCCTGGGCGTGGG CATCCCGGAGGACTCCATCTTTACGATGCCCGACAGAGGAGAGTGTGTCCCTGGGGAGCA GGAGCCTGAGCCCACCCTACTCTCGAGAGCCCGGCGGGCCGTGCTGCCCCAGGAAGAGGA AGGATCAGGAGCTGGACAACCAGTAGCAGATTTCAGCAAGAAAGAAGATTCCTGCCAGCT GGGCTACTCCCAAGGCCCTTGCCTGGGCATGATCAAGAGGTATTTCTATAATGGCTCATC CATGGCCTGCGAGACCTTCCACTATGGTGGCTGCATGGGGAACGGCAATAACTTCGTCTC GGAGAAGGAGTGTCTGCAGACCTGCCGGACTGTGGAGGCCTGCAGTCTCCCCATCGTCTC CGGCCCCTGCCGAGGTTTTTTCCAGCTCTGGGCGTTTGATGCCGTGCAGGGGAAGTGTGT TCTCTTCAACTATGGGGGCTGCCAGGGCAACGGCAACCAGTTCTACTCGGAGAAGGAGTG CAAAGAGTACTGCGGCGTCCCCGGTGAAGAGGATGAAGAGCTGCTGCGCTCCTCCAACTG ACCAGCCCGCAGGCCACAGGGCAGCAGGAGGGCCAGCGCCAGCGCCTGCCTGGTGCCCCA TGGCAGGTTCCAATAAAAACCAAATCGTAGCCTCCTGAAATTCCACGTCCTGACTGTTCA TCATTAAGTGTAATGAGATGGGGGAGGGGAGGGGGGGACAAGCTGGGGTGGGGGCCCGAG TAACCCCAGCATCCCCAGAAGTGAAAAATGTCTGTGTTGGAAATGTAATAGAACTCTCCT CCATACGTGAAATTGGCTATGCAAATTATGAAACATAAATCACCCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCAGGGCAAACAGCAGAGTCATCTACAGCCACAGGCCCCTTCCCCAGCTCCAGTTCACA GCTACCTCAGGCAGGGAGGTGGTGGCTGTCCTGTCCCCGACTGAGCCCGTGAGTGACACT CGAAGCAGAGGAGCCTGGAGCCATGCGGAGTCTCGGGACCCTGCTCCTGCTGCTGACCGC CTGCCTGGCCGTGAGCGCCAGCCCTGTGCTGACATTGCCCAATGACATCCAGGTGCAGGA GAACTTCGACCTGTCTAGGATCTACGGGAAATGGTTCCACGTGGCCGTGGGCTCCACCTG CCCCTGGCTGAAGAGGTTCAAGGACAAGATGACGATGGGCACGCTGATGCTGGGAGAGGG GGCGACGGAGAGGGAGATCAGCGTGACCAAGACTCACCGGAGGAAAGGTATCTGTGAGGT GATCTCTGGGGCTTATGAGAAAACAAGCACTGATGGAAAGTTCCTCTATCACAAATCCAA ATGGAACATCACCATGGAGTCCTATGTGGTCCACACCAACTATGATGAGTATGCCATATT TCTGACCAAGAAGTTCAGCCGCCGCCATGGACCAACCCTTACTGCCAAGCTCTACGGGCG GGAGCCGCAGCTTCGGGAAAGCCTGCTGGAGGAGTTCAGGGAGGTTGCCCTGGGCGTGGG CATCCCGGAGGACTCCATCTTTACGATGCCCGACAGAGGAGAGTGTGTCCCTGGGGAGCA GGAGCCTGAGCCCACCCTACTCTCGAGAGCCCGGCGGGCCGTGCTGCCCCAGGAAGAGGA AGGATCAGGAGCTGGACAACCAGTAGCAGATTTCAGCAAGAAAGAAGATTCCTGCCAGCT GGGCTACTCCCAAGGCCCTTGCCTGGGCATGATCAAGAGGTATTTCTATAATGGCTCATC CATGGCCTGCGAGACCTTCCACTATGGTGGCTGCATGGGGAACGGCAATAACTTCGTCTC GGAGAAGGAGTGTCTGCAGACCTGCCGGACTGTGGAGGCCTGCAGTCTCCCCATCGTCTC CGGCCCCTGCCGAGGTTTTTTCCAGCTCTGGGCGTTTGATGCCGTGCAGGGGAAGTGTGT TCTCTTCAACTATGGGGGCTGCCAGGGCAACGGCAACCAGTTCTACTCGGAGAAGGAGTG CAAAGAGTACTGCGGCGTCCCCGGTGAAGAGGATGAAGAGCTGCTGCGCTCCTCCAACTG ACCAGCCCGCAGGCCACAGGGCAGCAGGAGGGCCAGCGCCAGCGCCTGCCTGGTGCCCCA TGGCAGGTTCCAATAAAAACCAAATCGTAGCCTCCTGAAATTCCACGTCCTGACTGTTCA TCATTAAGTGTAATGAGATGGGGGAGGGGAGGGGGGGACAAGCTGGGGTGGGGGCCCGAG TAACCCCAGCATCCCCAGAAGTGAAAAATGTCTGTGTTGGAAATGTAATAGAACTCTCCT CCATACGTGAAATTGGCTATGCAAATTATGAAACATAAATCACCCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1312-1426, + strand, RNAz p=0.994599 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1312-1426, + strand, RNAz p=0.994599 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001633, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-259, gnl|bosTau2|chr8 (58237302-58237040) | |
| 1-259, gnl|Hg17|chr9 (113920187-113919927) | |
| 1-259, gnl|Mm7|chr4 (62587890-62587638) | |
| 461-617, gnl|bosTau2|chr8 (58232934-58232777) | |
| 461-617, gnl|Hg17|chr9 (113916006-113915830) | |
| 461-617, gnl|Mm7|chr4 (62584160-62583983) | |
| 826-995, gnl|bosTau2|chr8 (58227197-58227028) | |
| 826-995, gnl|canFam2|chr11 (71370244-71370376) | |
| 826-995, gnl|danRer3|chr10 (2397747-2397610) | |
| 826-995, gnl|dasNov1|scaffold_110316 (8506-8371) | |
| 826-995, gnl|echTel1|scaffold_157904 (2710-2845) | |
| 826-995, gnl|fr1|chrUn (250650261-250650130) | |
| 826-995, gnl|galGal2|chr17 (10213857-10213718) | |
| 826-995, gnl|hg17|chr9 (113903241-113903376) | |
| 826-995, gnl|Hg17|chr9 (113903427-113903258) | |
| 826-995, gnl|loxAfr1|scaffold_3758 (53950-54073) | |
| 826-995, gnl|mm7|chr4 (62577839-62577965) | |
| 826-995, gnl|Mm7|chr4 (62578016-62577847) | |
| 826-995, gnl|monDom2|scaffold_51 (470368-470246) | |
| 826-995, gnl|oryCun1|scaffold_214303 (2948-3070) | |
| 826-995, gnl|panTro1|chr11 (98440243-98440378) | |
| 826-995, gnl|rheMac2|chr15 (22068127-22067992) | |
| 826-995, gnl|rn3|chr5 (80126172-80126298) | |
| 826-995, gnl|tetNig1|chr4 (967991-967860) | |
| 826-995, gnl|xenTro1|scaffold_302 (932265-932133) | |
| 1168-1488, gnl|bosTau2|chr8 (58225699-58225375) | |
| 1168-1488, gnl|Hg17|chr9 (113902106-113901774) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-259, gnl|bosTau2|chr8 (58237302-58237040) | |
| 1-259, gnl|Hg17|chr9 (113920187-113919927) | |
| 1-259, gnl|Mm7|chr4 (62587890-62587638) | |
| 461-617, gnl|bosTau2|chr8 (58232934-58232777) | |
| 461-617, gnl|Hg17|chr9 (113916006-113915830) | |
| 461-617, gnl|Mm7|chr4 (62584160-62583983) | |
| 826-995, gnl|bosTau2|chr8 (58227197-58227028) | |
| 826-995, gnl|canFam2|chr11 (71370244-71370376) | |
| 826-995, gnl|danRer3|chr10 (2397747-2397610) | |
| 826-995, gnl|dasNov1|scaffold_110316 (8506-8371) | |
| 826-995, gnl|echTel1|scaffold_157904 (2710-2845) | |
| 826-995, gnl|fr1|chrUn (250650261-250650130) | |
| 826-995, gnl|galGal2|chr17 (10213857-10213718) | |
| 826-995, gnl|hg17|chr9 (113903241-113903376) | |
| 826-995, gnl|Hg17|chr9 (113903427-113903258) | |
| 826-995, gnl|loxAfr1|scaffold_3758 (53950-54073) | |
| 826-995, gnl|mm7|chr4 (62577839-62577965) | |
| 826-995, gnl|Mm7|chr4 (62578016-62577847) | |
| 826-995, gnl|monDom2|scaffold_51 (470368-470246) | |
| 826-995, gnl|oryCun1|scaffold_214303 (2948-3070) | |
| 826-995, gnl|panTro1|chr11 (98440243-98440378) | |
| 826-995, gnl|rheMac2|chr15 (22068127-22067992) | |
| 826-995, gnl|rn3|chr5 (80126172-80126298) | |
| 826-995, gnl|tetNig1|chr4 (967991-967860) | |
| 826-995, gnl|xenTro1|scaffold_302 (932265-932133) | |
| 1168-1488, gnl|bosTau2|chr8 (58225699-58225375) | |
| 1168-1488, gnl|Hg17|chr9 (113902106-113901774) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cli (10.2384) | |
| fli (3.85474) | |
| eli (2.88447) | |
| elu (0.385356) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (10.2384) | |
| fli (3.85474) | |
| eli (2.88447) | |
| elu (0.385356) | |
| ese (0.126502) | |
| eje (0.0988338) |