Ss1.1-Liv1-LVR010097D07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCAAGATGGCCACAGCTGGGGGCGGCTCTGTGGCCGGCCCGGGAAGTCGGAGTTTCCT TCGCCTTCTGCCTTTCTGCGTTCTTCTTGCAGGCTTGTGCAAAGGAAACTCAGTGGAGAG GAAGATCTACATCCCTTTAAATAAAACAGCTCCCTGTGTCCGTCTGCTCAATGCCACTCA TCAGATTGGCTGCCAGTCTTCCGTTAGCGGGGATACAGGGGTTATCCACGTAGTAGAGAA GGAAGAGGACCTGCAGTGGGTGTTGACCGATGGCCCTAACCCCCCTTACATGGTTCTGCT GGAAGGCACACTCTTTACCAGGAATCTGATGGAGAAGCTGAAGGGGAGAACCGGCCGAAT TGCTGGTCTTGCAGTGTCTTTAGCCAAGCCCAGTCCCACCTCGGGCTTCTCTCCTAGTGT ACAGTGTCCCAATGATGGGTTTGGAATTTACTCCGACTCCTATGGGCCAGAGTTTGCTCA CTGCAGAGAGATACTGTGGAACTCCCTGGGCAATGGCTTGGCTTATGAAGACTTTAGTTT CCCCATCTTCCTTCTTGAAGATGAAGATGAAACTAATATCATTAAACAGTGCTACCGAGA TCACAACCTGAGTCAGAATGGCTCGGCTCCAGCCTTCCCGCTGTGTGCCATGCAGCTCTT CTCACACATGCATGCTGTCATCAGCACTGTCACCTGCATGCGGCGCAGCTCCATCCAGAG CACCTTCAGCATCAACCCAGAAATCGTCTGTGATCCCCTCTCCGACTACAATGTGTGGAG CATGCTTAAGCCTATAAATACATCTGGGACGTTGGAGCCTGGTGACAGGGTTGTGGTGGC TGCCACCCGACTGGACAGTCGTTCCTTTTTCTGGAATGTGGCCCCAGGGGCGGAGAGTGC TGTTGCCTCCTTCGTCACCCAGCTGGCTGCCGCTGAAGCTCTGCAGAAGGCACCCGATGT GACCACCCTGCCCCGCAATGTCATGTTTGTCTTCTTCCAAGGGGAAACTTTTGACTACAT TGGCAGCTCAAGAATGGTCTACGATATGGAGAAGGGCAAGTTTCCTGTGCAGTTAGAGAA CATTGACTCATTCGTGGAGCTGGGACAGGTGGCCTTAAGAAATTCGCTAGCGCTTTGGAT GCACACAGACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCAAGATGGCCACAGCTGGGGGCGGCTCTGTGGCCGGCCCGGGAAGTCGGAGTTTCCT TCGCCTTCTGCCTTTCTGCGTTCTTCTTGCAGGCTTGTGCAAAGGAAACTCAGTGGAGAG GAAGATCTACATCCCTTTAAATAAAACAGCTCCCTGTGTCCGTCTGCTCAATGCCACTCA TCAGATTGGCTGCCAGTCTTCCGTTAGCGGGGATACAGGGGTTATCCACGTAGTAGAGAA GGAAGAGGACCTGCAGTGGGTGTTGACCGATGGCCCTAACCCCCCTTACATGGTTCTGCT GGAAGGCACACTCTTTACCAGGAATCTGATGGAGAAGCTGAAGGGGAGAACCGGCCGAAT TGCTGGTCTTGCAGTGTCTTTAGCCAAGCCCAGTCCCACCTCGGGCTTCTCTCCTAGTGT ACAGTGTCCCAATGATGGGTTTGGAATTTACTCCGACTCCTATGGGCCAGAGTTTGCTCA CTGCAGAGAGATACTGTGGAACTCCCTGGGCAATGGCTTGGCTTATGAAGACTTTAGTTT CCCCATCTTCCTTCTTGAAGATGAAGATGAAACTAATATCATTAAACAGTGCTACCGAGA TCACAACCTGAGTCAGAATGGCTCGGCTCCAGCCTTCCCGCTGTGTGCCATGCAGCTCTT CTCACACATGCATGCTGTCATCAGCACTGTCACCTGCATGCGGCGCAGCTCCATCCAGAG CACCTTCAGCATCAACCCAGAAATCGTCTGTGATCCCCTCTCCGACTACAATGTGTGGAG CATGCTTAAGCCTATAAATACATCTGGGACGTTGGAGCCTGGTGACAGGGTTGTGGTGGC TGCCACCCGACTGGACAGTCGTTCCTTTTTCTGGAATGTGGCCCCAGGGGCGGAGAGTGC TGTTGCCTCCTTCGTCACCCAGCTGGCTGCCGCTGAAGCTCTGCAGAAGGCACCCGATGT GACCACCCTGCCCCGCAATGTCATGTTTGTCTTCTTCCAAGGGGAAACTTTTGACTACAT TGGCAGCTCAAGAATGGTCTACGATATGGAGAAGGGCAAGTTTCCTGTGCAGTTAGAGAA CATTGACTCATTCGTGGAGCTGGGACAGGTGGCCTTAAGAAATTCGCTAGCGCTTTGGAT GCACACAGACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 623-740, - strand, RNAz p=0.654728 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 623-740, - strand, RNAz p=0.654728 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 190-322, gnl|bosTau2|chr3 (4711816-4711685) | |
| 190-322, gnl|Hg17|chr1 (157131855-157131986) | |
| 190-322, gnl|Mm7|chr1 (172045708-172045577) | |
| 588-740, gnl|bosTau2|chr3 (4709821-4709669) | |
| 588-740, gnl|canFam2|chr38 (24884627-24884437) | |
| 588-740, gnl|echTel1|scaffold_309814 (52598-52791) | |
| 588-740, gnl|fr1|chrUn (275883290-275883135) | |
| 588-740, gnl|galGal2|chrUn (8027575-8027384) | |
| 588-740, gnl|hg17|chr1 (157134046-157134239) | |
| 588-740, gnl|Hg17|chr1 (157134083-157134235) | |
| 588-740, gnl|loxAfr1|scaffold_9646 (25054-24884) | |
| 588-740, gnl|mm7|chr1 (172043139-172042948) | |
| 588-740, gnl|Mm7|chr1 (172043102-172042950) | |
| 588-740, gnl|monDom2|scaffold_13 (61133045-61132860) | |
| 588-740, gnl|panTro1|chr1 (139214171-139214364) | |
| 588-740, gnl|rheMac2|chr1 (138969408-138969601) | |
| 588-740, gnl|rn3|chr13 (88256868-88256677) | |
| 588-740, gnl|tetNig1|chrUn_random (40702233-40702396) | |
| 839-1004, gnl|bosTau2|chr3 (4708867-4708703) | |
| 839-1004, gnl|canFam2|chr38 (24883788-24883597) | |
| 839-1004, gnl|dasNov1|scaffold_83375 (4513-4319) | |
| 839-1004, gnl|echTel1|scaffold_309814 (53390-53583) | |
| 839-1004, gnl|fr1|chrUn (275882270-275882085) | |
| 839-1004, gnl|galGal2|chrUn (8026888-8026690) | |
| 839-1004, gnl|hg17|chr1 (157134884-157135078) | |
| 839-1004, gnl|Hg17|chr1 (157134906-157135070) | |
| 839-1004, gnl|mm7|chr1 (172042479-172042287) | |
| 839-1004, gnl|Mm7|chr1 (172042456-172042293) | |
| 839-1004, gnl|monDom2|scaffold_13 (61132095-61131900) | |
| 839-1004, gnl|oryCun1|scaffold_117384 (590-781) | |
| 839-1004, gnl|panTro1|chr1 (139215009-139215203) | |
| 839-1004, gnl|rheMac2|chr1 (138970248-138970442) | |
| 839-1004, gnl|rn3|chr13 (88256128-88255944) | |
| 839-1004, gnl|tetNig1|chrUn_random (40703385-40703570) | |
| 839-1004, gnl|xenTro1|scaffold_96 (2021322-2021512) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 190-322, gnl|bosTau2|chr3 (4711816-4711685) | |
| 190-322, gnl|Hg17|chr1 (157131855-157131986) | |
| 190-322, gnl|Mm7|chr1 (172045708-172045577) | |
| 588-740, gnl|bosTau2|chr3 (4709821-4709669) | |
| 588-740, gnl|canFam2|chr38 (24884627-24884437) | |
| 588-740, gnl|echTel1|scaffold_309814 (52598-52791) | |
| 588-740, gnl|fr1|chrUn (275883290-275883135) | |
| 588-740, gnl|galGal2|chrUn (8027575-8027384) | |
| 588-740, gnl|hg17|chr1 (157134046-157134239) | |
| 588-740, gnl|Hg17|chr1 (157134083-157134235) | |
| 588-740, gnl|loxAfr1|scaffold_9646 (25054-24884) | |
| 588-740, gnl|mm7|chr1 (172043139-172042948) | |
| 588-740, gnl|Mm7|chr1 (172043102-172042950) | |
| 588-740, gnl|monDom2|scaffold_13 (61133045-61132860) | |
| 588-740, gnl|panTro1|chr1 (139214171-139214364) | |
| 588-740, gnl|rheMac2|chr1 (138969408-138969601) | |
| 588-740, gnl|rn3|chr13 (88256868-88256677) | |
| 588-740, gnl|tetNig1|chrUn_random (40702233-40702396) | |
| 839-1004, gnl|bosTau2|chr3 (4708867-4708703) | |
| 839-1004, gnl|canFam2|chr38 (24883788-24883597) | |
| 839-1004, gnl|dasNov1|scaffold_83375 (4513-4319) | |
| 839-1004, gnl|echTel1|scaffold_309814 (53390-53583) | |
| 839-1004, gnl|fr1|chrUn (275882270-275882085) | |
| 839-1004, gnl|galGal2|chrUn (8026888-8026690) | |
| 839-1004, gnl|hg17|chr1 (157134884-157135078) | |
| 839-1004, gnl|Hg17|chr1 (157134906-157135070) | |
| 839-1004, gnl|mm7|chr1 (172042479-172042287) | |
| 839-1004, gnl|Mm7|chr1 (172042456-172042293) | |
| 839-1004, gnl|monDom2|scaffold_13 (61132095-61131900) | |
| 839-1004, gnl|oryCun1|scaffold_117384 (590-781) | |
| 839-1004, gnl|panTro1|chr1 (139215009-139215203) | |
| 839-1004, gnl|rheMac2|chr1 (138970248-138970442) | |
| 839-1004, gnl|rn3|chr13 (88256128-88255944) | |
| 839-1004, gnl|tetNig1|chrUn_random (40703385-40703570) | |
| 839-1004, gnl|xenTro1|scaffold_96 (2021322-2021512) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.264306) | |
| cty (0.20816) | |
| nep (0.183925) |