Ss1.1-Liv1-LVR010097F10.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGAGTGGGACTTGCCTGCTCCCCTTACACACTGTCCTCTCCTGTTCTCCAGCATGTTG CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACTGTGATGCTGGTGGTGCTG AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGAAATTC GAGTGTCATTTCTTCAATGGGACCGAGCAGGTGAGGTTATTGGAGAGGCAATACTATAAC GGAGAGGAGTTCGTGCGCTTCGACAGCGACGTGGGCGAGTACCGGGCGGTGACCGAGCTG GGGCGGCCAGACGCCAAGAACTATAACAGCCAGAAGGACCTCCTGGAGCAGAGGCGGGCG GAGGTGGACACGTACTGCAGACACAACTACAGGACCTCCGATACATTCCTGGTGCCGCGG CGAGCTGAGCCCAGAGTGACGGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGG AATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGC CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA TCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT GCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCCCTTCAGCCAACA GGCCTCCTGAGCTGAAGTGCAGATGGTGACACTCCAAGCAAGCATCCTCTGTGCCAGCGT CTTCACAGCATGAGAAGGCTCCTGCTATGCTCTGCGTCCTCCCCCAGGAGAGCTCTTCCT CAGACTCTCCTCTGCTCCTGGTTCAGGGACCCTGCAGAAAAGGTCTTTTGATGGCTTTCT CAACCTCCCCCCTTTGACCTGGAAGTTCCTGGCATTGATTGCTATGCCTATGTTCATTTT TCTTTTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGAGTGGGACTTGCCTGCTCCCCTTACACACTGTCCTCTCCTGTTCTCCAGCATGTTG CATCTGTGTTTCTCCAGAGGCTTCTGGATGGCAGCTCTGACTGTGATGCTGGTGGTGCTG AGCCCTCCCTTGGCTTTGGCCAGGGACACCCCACCGCATTTCTTGTTTCTGGGGAAATTC GAGTGTCATTTCTTCAATGGGACCGAGCAGGTGAGGTTATTGGAGAGGCAATACTATAAC GGAGAGGAGTTCGTGCGCTTCGACAGCGACGTGGGCGAGTACCGGGCGGTGACCGAGCTG GGGCGGCCAGACGCCAAGAACTATAACAGCCAGAAGGACCTCCTGGAGCAGAGGCGGGCG GAGGTGGACACGTACTGCAGACACAACTACAGGACCTCCGATACATTCCTGGTGCCGCGG CGAGCTGAGCCCAGAGTGACGGTGTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAAC CTCCTGGTCTGCTCTGTGACCGGGTTCTACCCAGGCCACGTGGAGGTCAGGTGGTTCCGG AATGGCCAGGAAGAGGCGGCGGGGGTGGTCTCCACAGGCCTGATCCCTAATGGAGACTGG ACCTTCCAGACCATGGTGATGCTTGAAACGGTTCCTCAGAGTGGAGAGGTCTACAGCTGC CGAGTGGAGCACCCCAGCCTGACGAGCCCCGTCACAGTGGAATGGAGGGCACGGTCTGAA TCTGCTCAGGGCAAGATGATGAGTGGGATCGGGGGCTTCGTCCTGGGTCTGCTCTTTGTT GCTGTGGGGCTGTTCATCTACTTCAAGAATCAGAAAGGACGCCCTGCCCTTCAGCCAACA GGCCTCCTGAGCTGAAGTGCAGATGGTGACACTCCAAGCAAGCATCCTCTGTGCCAGCGT CTTCACAGCATGAGAAGGCTCCTGCTATGCTCTGCGTCCTCCCCCAGGAGAGCTCTTCCT CAGACTCTCCTCTGCTCCTGGTTCAGGGACCCTGCAGAAAAGGTCTTTTGATGGCTTTCT CAACCTCCCCCCTTTGACCTGGAAGTTCCTGGCATTGATTGCTATGCCTATGTTCATTTT TCTTTTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr23 (21236056-21236209) | |
| 1-154, gnl|canFam2|chr12 (5254003-5254141) | |
| 1-154, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 1-154, gnl|echTel1|scaffold_103957 (609-463) | |
| 1-154, gnl|hg17|chr6 (32665390-32665536) | |
| 1-154, gnl|Hg17|chr6 (32665551-32665398) | |
| 1-154, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 1-154, gnl|mm7|chr17 (32383382-32383244) | |
| 1-154, gnl|Mm7|chr17 (32383234-32383372) | |
| 1-154, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 1-154, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 1-154, gnl|panTro1|chr5 (33118451-33118597) | |
| 1-154, gnl|rheMac2|chr4 (32322304-32322450) | |
| 1-154, gnl|rn3|chr20 (4681120-4681258) | |
| 181-390, gnl|bosTau2|chr23 (5464267-5464058) | |
| 181-390, gnl|Hg17|chr6 (32891042-32890833) | |
| 181-390, gnl|Mm7|chr17 (32410520-32410726) | |
| 427-723, gnl|bosTau2|chr23 (21244789-21245086) | |
| 427-723, gnl|Hg17|chr6 (32657591-32657293) | |
| 427-723, gnl|Mm7|chr17 (32391497-32391797) | |
| 813-1081, gnl|bosTau2|chr23 (22937697-22937963) | |
| 813-1081, gnl|Hg17|chr6 (32628853-32628583) | |
| 813-1081, gnl|Mm7|chr17 (32393170-32393422) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr23 (21236056-21236209) | |
| 1-154, gnl|canFam2|chr12 (5254003-5254141) | |
| 1-154, gnl|dasNov1|scaffold_23750 (14255-14386) | |
| 1-154, gnl|echTel1|scaffold_103957 (609-463) | |
| 1-154, gnl|hg17|chr6 (32665390-32665536) | |
| 1-154, gnl|Hg17|chr6 (32665551-32665398) | |
| 1-154, gnl|loxAfr1|scaffold_36898 (7532-7395) | |
| 1-154, gnl|mm7|chr17 (32383382-32383244) | |
| 1-154, gnl|Mm7|chr17 (32383234-32383372) | |
| 1-154, gnl|monDom2|scaffold_42 (16267144-16266995) | |
| 1-154, gnl|oryCun1|scaffold_173411 (15197-15065) | |
| 1-154, gnl|panTro1|chr5 (33118451-33118597) | |
| 1-154, gnl|rheMac2|chr4 (32322304-32322450) | |
| 1-154, gnl|rn3|chr20 (4681120-4681258) | |
| 181-390, gnl|bosTau2|chr23 (5464267-5464058) | |
| 181-390, gnl|Hg17|chr6 (32891042-32890833) | |
| 181-390, gnl|Mm7|chr17 (32410520-32410726) | |
| 427-723, gnl|bosTau2|chr23 (21244789-21245086) | |
| 427-723, gnl|Hg17|chr6 (32657591-32657293) | |
| 427-723, gnl|Mm7|chr17 (32391497-32391797) | |
| 813-1081, gnl|bosTau2|chr23 (22937697-22937963) | |
| 813-1081, gnl|Hg17|chr6 (32628853-32628583) | |
| 813-1081, gnl|Mm7|chr17 (32393170-32393422) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| csp (3.38491) | |
| cly (2.77476) | |
| pty (0.428143) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| ste (0.135208) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (3.38491) | |
| cly (2.77476) | |
| pty (0.428143) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cli (0.152812) | |
| ste (0.135208) | |
| jca (0.11396) |