Non-Coding RNA Search

Ss1.1-Liv1-LVR010099A06.5

Sequence:


               
               GGACAACCAGGAACCGGTGTTGCTGCTGAATGTGTCCTCCAGTTCCCCGGGCCTGCCAAG
GCCCACTTCGGCTCTTGGTTTCCGGGGGCCTGATGAGCAAAAGGCTGGAAGGACACTTAG
GAGGGTGACGGGCAGTCAACGTTTTCCAAGGATATGTGCCCTTTGTCCTCTTTGCACCTT
CAATACATTCTGGAAATGTCAGACTTTGCACACTGGTGGGGGTGGGGTGGAGAGGGCTCT
ACCTACAGCAAATTATTCCTGAACACATGCACGTCGGGAGGCTCCATCTGGTCAGAGATA
GGATGTTCAAAGTGTGGTCCTAGTGGTTTTTTTGTTTTTTGCTGCCGAGTCCTTAACTGA
CCCCAAAGCCAAGTTTCCAAGGTGCAAAGAGATCACTCCCGTTTCAGTCTGCGGCCCCCA
CTTTCCCTCCTCCCTGTACAGGCCCCCTCAAGGATCTACTGTGAAAGGTGTTTTGTACCA
CGATGTCTGACCTAACTCAGTAACGAAACGCAGCCCTTACCTTAGCTCTTAGCTGTGAAA
TATGTAGTAACTCTGGAAATGTCCCCTCTCCTCCCGTAAATTCTGCTTCGCCTACACAGC
AATCGGTCCCCAGCTTGAAACCAGCTTAGGCCGGAAGGAAGGAAGGACACCACCACCCAC
TCGGGAGGGGCACCCCCGGGCCGAGCCCGTGGTACCCAGCGGGTGGACAAGGTGCTCCGC
TCGCCTCGGGGGAGCAGGGGCCGAGACCCATACCAGATCATCCAGGCGCGAGGACGTGCT
GTCATTCTGAGACAACAGGAAAGCGGCCCCTCCGAGCGAGGGGCGGGGGGAGAAAAGTCT
TTGAAGGATGCGCTAGACAGGGCCTTCCCAGAGCCAGCCCGCCGGGGGGCTCATCTCTGT
TCTGGACTTTGGGCATCCAGAGGGCAGCAGTGCCCCGTCGGATCTCCCCTCGCCCGGTGA
CCCGGGTACAGACGTCTCCGCTGCCCACGAGCCAGCATTTTTGCCTTATTGGGTAGCATC
CTGAGCCCCCCTGTGTGGTTCCCN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAACCAGGAACCGGTGTTGCTGCTGAATGTGTCCTCCAGTTCCCCGGGCCTGCCAAG
GCCCACTTCGGCTCTTGGTTTCCGGGGGCCTGATGAGCAAAAGGCTGGAAGGACACTTAG
GAGGGTGACGGGCAGTCAACGTTTTCCAAGGATATGTGCCCTTTGTCCTCTTTGCACCTT
CAATACATTCTGGAAATGTCAGACTTTGCACACTGGTGGGGGTGGGGTGGAGAGGGCTCT
ACCTACAGCAAATTATTCCTGAACACATGCACGTCGGGAGGCTCCATCTGGTCAGAGATA
GGATGTTCAAAGTGTGGTCCTAGTGGTTTTTTTGTTTTTTGCTGCCGAGTCCTTAACTGA
CCCCAAAGCCAAGTTTCCAAGGTGCAAAGAGATCACTCCCGTTTCAGTCTGCGGCCCCCA
CTTTCCCTCCTCCCTGTACAGGCCCCCTCAAGGATCTACTGTGAAAGGTGTTTTGTACCA
CGATGTCTGACCTAACTCAGTAACGAAACGCAGCCCTTACCTTAGCTCTTAGCTGTGAAA
TATGTAGTAACTCTGGAAATGTCCCCTCTCCTCCCGTAAATTCTGCTTCGCCTACACAGC
AATCGGTCCCCAGCTTGAAACCAGCTTAGGCCGGAAGGAAGGAAGGACACCACCACCCAC
TCGGGAGGGGCACCCCCGGGCCGAGCCCGTGGTACCCAGCGGGTGGACAAGGTGCTCCGC
TCGCCTCGGGGGAGCAGGGGCCGAGACCCATACCAGATCATCCAGGCGCGAGGACGTGCT
GTCATTCTGAGACAACAGGAAAGCGGCCCCTCCGAGCGAGGGGCGGGGGGAGAAAAGTCT
TTGAAGGATGCGCTAGACAGGGCCTTCCCAGAGCCAGCCCGCCGGGGGGCTCATCTCTGT
TCTGGACTTTGGGCATCCAGAGGGCAGCAGTGCCCCGTCGGATCTCCCCTCGCCCGGTGA
CCCGGGTACAGACGTCTCCGCTGCCCACGAGCCAGCATTTTTGCCTTATTGGGTAGCATC
CTGAGCCCCCCTGTGTGGTTCCCN

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               128-632, gnl|bosTau2|chr4 (56657743-56657228)
               

               
               128-632, gnl|Hg17|chr7 (138713047-138712542)
               

               
               128-632, gnl|Mm7|chr6 (38627234-38626798)
               


               
               760-1029, gnl|bosTau2|chr4 (56657125-56656869)
               

               
               760-1029, gnl|Hg17|chr7 (138712394-138712132)
               

               
               760-1029, gnl|Mm7|chr6 (38626642-38626416)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-632, gnl|bosTau2|chr4 (56657743-56657228)
               

               
               128-632, gnl|Hg17|chr7 (138713047-138712542)
               

               
               128-632, gnl|Mm7|chr6 (38627234-38626798)
               


               
               760-1029, gnl|bosTau2|chr4 (56657125-56656869)
               

               
               760-1029, gnl|Hg17|chr7 (138712394-138712132)
               

               
               760-1029, gnl|Mm7|chr6 (38626642-38626416)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cbr (0.127975)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)
               

               
               clu (0.119646)

	128-632, gnl\|bosTau2\|chr4 (56657743-56657228)
	128-632, gnl\|Hg17\|chr7 (138713047-138712542)
	128-632, gnl\|Mm7\|chr6 (38627234-38626798)

	760-1029, gnl\|bosTau2\|chr4 (56657125-56656869)
	760-1029, gnl\|Hg17\|chr7 (138712394-138712132)
	760-1029, gnl\|Mm7\|chr6 (38626642-38626416)