Ss1.1-Liv1-LVR010099B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCAGAGCTCGCGACTGTGGTGGCGGGAGTAGCGGCGTGGATTCCTTACGAAAGCCGG TAACAGGGAACTTGAGCAGAAGCCAAGAGACCCATGGTCAAGCCCAGCTCTGCACCTGAC GACCAGAGCTCGCGACTGTGGTGGCGGGAGTAGCGGCGTGGATTCCTTACGAAAGCCGAG CTGAGCACGAAGCAGAACCCCCAGGAGCCCTCCATTCCAACCAGCTGGCTGCTCTCTGTG CCCCCTGCCCACCATGCAGCCACAGTCAGTCCTGCACAGCGGCTACTTCCACCCACTGCT TCGGACCTGGCAGACAGCCGCCACCAGCCTTAGTGCCTCCAACCTCATCTACCCCATCTT TGTCACGGATGGTCCTGATGACAAACAGCCCGTCGCCAGCCTCCCAGGAGTGGCCAGATA TGGCGTGAACCGTCTGGAAGAGATGCTGAAGCCCCTGGTGGAAGAGGGCCTGCGCTGCGT CCTGATCTTCGGTGTCCCCAGCAGAATTCCCAAGGATGAGCGGGGCTCTGCAGCCGACTC TGAGGACTCCCCAGCTATCGAGGCGATCCGTCTGCTGCGCAAGAACTTCCCGAGCCTCCT GGTGGCCTGCGATGTCTGCCTGTGCCCCTACACCTCCCACGGTCACTGCGGGCTTCTGAG TGAGAATGGGTCCTTCCAAGCTGAGGAGAGCCGCCAGCGGCTGGCGGAGGTGGCACTGGC CTATGCCAAGGCAGGATGTCAGGTGATAGCCCCGTCGGACATGATGGATGGACGCGTGGA AGCCATTAAGGAGGCTCTGATGGCACATGGATTCGGCAACCGGGTATCAGTGATGAGCTA TAGCGCCAAATTCGCTTCCTGTTTCTACGGACCTTTCCGGGATGCAGCTCAATCAAGCCC AGCTTTTGGAGATCGCCGCTGCTACCAGCTGCCGCCTGGAGCACGAGGCCTGGCCCTCCG AGCAGTGGACCGGGATGTACGGGAAGGAGCCGACATGCTCATGGTGAAGCCAGGAATGCC CTACCTGGACATCGTGCGGGAGGTAAAGACCAAGCATCCTGAGCTCCCTCTTGCTGTGTA CCACGTTTCTGGAGAGTTTGCCATGCTGTGGCACGGGGCCCAGGCCGGGGCATTTGATCT CAAGACTGCAGTACTGGAGGTCATGACTGCCTTCCGTAGAGCTGGTGCCGATGTCATCAT CACCTACTACACGCCTCAGCTATTGCAGTGGCTGAAGGACTGATGGAGAAAGTACGCCAG ACCCAAGAACTAGAACTTTAAAAATTCCTGAGCCTTGGAGAAGTGACAACCAAAGTAAAC ACTGCTTTTAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCAGAGCTCGCGACTGTGGTGGCGGGAGTAGCGGCGTGGATTCCTTACGAAAGCCGG TAACAGGGAACTTGAGCAGAAGCCAAGAGACCCATGGTCAAGCCCAGCTCTGCACCTGAC GACCAGAGCTCGCGACTGTGGTGGCGGGAGTAGCGGCGTGGATTCCTTACGAAAGCCGAG CTGAGCACGAAGCAGAACCCCCAGGAGCCCTCCATTCCAACCAGCTGGCTGCTCTCTGTG CCCCCTGCCCACCATGCAGCCACAGTCAGTCCTGCACAGCGGCTACTTCCACCCACTGCT TCGGACCTGGCAGACAGCCGCCACCAGCCTTAGTGCCTCCAACCTCATCTACCCCATCTT TGTCACGGATGGTCCTGATGACAAACAGCCCGTCGCCAGCCTCCCAGGAGTGGCCAGATA TGGCGTGAACCGTCTGGAAGAGATGCTGAAGCCCCTGGTGGAAGAGGGCCTGCGCTGCGT CCTGATCTTCGGTGTCCCCAGCAGAATTCCCAAGGATGAGCGGGGCTCTGCAGCCGACTC TGAGGACTCCCCAGCTATCGAGGCGATCCGTCTGCTGCGCAAGAACTTCCCGAGCCTCCT GGTGGCCTGCGATGTCTGCCTGTGCCCCTACACCTCCCACGGTCACTGCGGGCTTCTGAG TGAGAATGGGTCCTTCCAAGCTGAGGAGAGCCGCCAGCGGCTGGCGGAGGTGGCACTGGC CTATGCCAAGGCAGGATGTCAGGTGATAGCCCCGTCGGACATGATGGATGGACGCGTGGA AGCCATTAAGGAGGCTCTGATGGCACATGGATTCGGCAACCGGGTATCAGTGATGAGCTA TAGCGCCAAATTCGCTTCCTGTTTCTACGGACCTTTCCGGGATGCAGCTCAATCAAGCCC AGCTTTTGGAGATCGCCGCTGCTACCAGCTGCCGCCTGGAGCACGAGGCCTGGCCCTCCG AGCAGTGGACCGGGATGTACGGGAAGGAGCCGACATGCTCATGGTGAAGCCAGGAATGCC CTACCTGGACATCGTGCGGGAGGTAAAGACCAAGCATCCTGAGCTCCCTCTTGCTGTGTA CCACGTTTCTGGAGAGTTTGCCATGCTGTGGCACGGGGCCCAGGCCGGGGCATTTGATCT CAAGACTGCAGTACTGGAGGTCATGACTGCCTTCCGTAGAGCTGGTGCCGATGTCATCAT CACCTACTACACGCCTCAGCTATTGCAGTGGCTGAAGGACTGATGGAGAAAGTACGCCAG ACCCAAGAACTAGAACTTTAAAAATTCCTGAGCCTTGGAGAAGTGACAACCAAAGTAAAC ACTGCTTTTAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1053-1171, - strand, RNAz p=0.594116 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1053-1171, - strand, RNAz p=0.594116 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 178-367, gnl|bosTau2|chr8 (52837877-52838066) | |
| 178-367, gnl|Hg17|chr9 (113235469-113235280) | |
| 178-367, gnl|Mm7|chr4 (61947957-61947769) | |
| 513-651, gnl|bosTau2|chr8 (52840163-52840301) | |
| 513-651, gnl|Hg17|chr9 (113232769-113232631) | |
| 513-651, gnl|Mm7|chr4 (61945720-61945582) | |
| 1053-1187, gnl|bosTau2|chr8 (52841717-52841851) | |
| 1053-1187, gnl|canFam2|chr11 (70773162-70773352) | |
| 1053-1187, gnl|dasNov1|scaffold_67361 (2850-2657) | |
| 1053-1187, gnl|echTel1|scaffold_300725 (5188-5016) | |
| 1053-1187, gnl|fr1|chrUn (182452930-182452787) | |
| 1053-1187, gnl|hg17|chr9 (113230787-113230977) | |
| 1053-1187, gnl|Hg17|chr9 (113230942-113230808) | |
| 1053-1187, gnl|loxAfr1|scaffold_4431 (85136-84944) | |
| 1053-1187, gnl|mm7|chr4 (61943782-61943957) | |
| 1053-1187, gnl|Mm7|chr4 (61943931-61943798) | |
| 1053-1187, gnl|monDom2|scaffold_51 (1436031-1435843) | |
| 1053-1187, gnl|oryCun1|scaffold_173104 (47259-47063) | |
| 1053-1187, gnl|panTro1|chr11 (97768678-97768868) | |
| 1053-1187, gnl|rheMac2|chr15 (22729777-22729587) | |
| 1053-1187, gnl|rn3|chr5 (79511675-79511850) | |
| 1053-1187, gnl|tetNig1|chrUn_random (12438131-12438296) | |
| 1053-1187, gnl|xenTro1|scaffold_302 (544549-544380) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 178-367, gnl|bosTau2|chr8 (52837877-52838066) | |
| 178-367, gnl|Hg17|chr9 (113235469-113235280) | |
| 178-367, gnl|Mm7|chr4 (61947957-61947769) | |
| 513-651, gnl|bosTau2|chr8 (52840163-52840301) | |
| 513-651, gnl|Hg17|chr9 (113232769-113232631) | |
| 513-651, gnl|Mm7|chr4 (61945720-61945582) | |
| 1053-1187, gnl|bosTau2|chr8 (52841717-52841851) | |
| 1053-1187, gnl|canFam2|chr11 (70773162-70773352) | |
| 1053-1187, gnl|dasNov1|scaffold_67361 (2850-2657) | |
| 1053-1187, gnl|echTel1|scaffold_300725 (5188-5016) | |
| 1053-1187, gnl|fr1|chrUn (182452930-182452787) | |
| 1053-1187, gnl|hg17|chr9 (113230787-113230977) | |
| 1053-1187, gnl|Hg17|chr9 (113230942-113230808) | |
| 1053-1187, gnl|loxAfr1|scaffold_4431 (85136-84944) | |
| 1053-1187, gnl|mm7|chr4 (61943782-61943957) | |
| 1053-1187, gnl|Mm7|chr4 (61943931-61943798) | |
| 1053-1187, gnl|monDom2|scaffold_51 (1436031-1435843) | |
| 1053-1187, gnl|oryCun1|scaffold_173104 (47259-47063) | |
| 1053-1187, gnl|panTro1|chr11 (97768678-97768868) | |
| 1053-1187, gnl|rheMac2|chr15 (22729777-22729587) | |
| 1053-1187, gnl|rn3|chr5 (79511675-79511850) | |
| 1053-1187, gnl|tetNig1|chrUn_random (12438131-12438296) | |
| 1053-1187, gnl|xenTro1|scaffold_302 (544549-544380) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cli (1.06968) | |
| cov (0.528611) | |
| nbm (0.496623) | |
| eli (0.455443) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nep (0.183925) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| thg (0.126791) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.06968) | |
| cov (0.528611) | |
| nbm (0.496623) | |
| eli (0.455443) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| hea (0.204499) | |
| nep (0.183925) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| thg (0.126791) |