Ss1.1-Liv1-LVR010099C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTCAAAATGTTAAGATTTTATTTACAAAGCTTCTTTGTTGTACAGAAAGT AAAAATGCTGTTACAATCTTGGTGTAACTGGTAGCCACAGGTGGTTGACTCACCAATCAC AGCTATCCACGCTACAGCAAGAGTCTTACACTGAGAACCTAAAACATCGCTTACAATTCT GTTGGGGTAAGTCCCCAAGCTTGGTGGTGGATTTCCAAGAGGGACTAAAATGGAGGAAGG CGGAATGTCACAGGAACTATTCTTTGGCTCTTTGGGTGGGTGGGTGTCCTGGGGTTTGTA TCACAGCTACTTTTTTTTTTTAAACAGCTACCAAATCCATATGAGCAGTCCAACCAATAC TGAACAGTTCTTTTTTTTGTTGGTTATTTGGGATCTTAATCATCTTCTCCTTCATCATCT GTTTCTCTCTTCCTCTTTTCACCTTTCTCGTTTTCTTCCTCCTCTTCATCCTCATCCTCA TCTTCATCCTCATCGTCTTCATCTTCATCGACTTCTCCATCATGTCCAAATTCTTCTTCC TCCCCACTGACTTCATCTTCATCCTCCTCCCCTTCTACATCTTCATCTTCATCTTCATCC TCTTCATCGTCAAACTCTTCTTCCTCGCCGTCCTCTTCCTCCTCCTTGTCTTCATCTTCT CCTTCTTCATCATCCTCTTCTTCATCCACACCATCCACCTCGGCATCTGAGTCAGGGGCT TCACCATCGTCTCTGTCATAGCCATCCAGGTAGCTCAGCTGGGGCAGGAGCTTGAAGACA CTCTCTCGATAGTCATTCAGGTTAGTAACCTCACAGTTAAAGAGATCCAGGCTTTTCAGA CACTCCAACTTTTTCAAAGGTTCCAGGGTGCTGATATCTTTCAGTTTATTTCCACTTAAG TTTAGATGTGTGAGATTTGGAAGTTTTTCTGCTAACATATCCAGACCTCCATAGATTCTA TTGTCACTGAGCTCAAGCTTTTTCAATTTAGGTAGTTTGGGGAGATTTGAAACTGAAATC AACCCTACATTTATTAAACTGAGGAACTCTAAGTTCACAAATTCAGCTGTTAAGCCCTCA ATTTTCCCATCACTTGATTTGCAATTATCCAGCACAAGTTCTCGAACAGCTGCCGGGGTC CGGTTCCTCAGCTCCAGGTGGATTCTCTTCTTCATGTCCATGTTTCCCTCTTCCCCCCTC TTCAAACTTAACTTTCCGCAACGGGGGCGGAGGGGGGAGAGGCTCCCAGCCTGCGCAGCG AGGGCCGTCGGAAGGGGTCTGCTCGAGGCAGAGGCCGGCGGCGCGGTCCGGGGCGGCTGG CGGCGTGCGGGCAGGAGAGCGGAGCCCCCGGAGCCAAGTTACTCACGGGAGCGGAGAGAA ACCATGGAGGGAAAGGGGGCTGGAGCGCAGCGCTGGTCTCACTACCGCCGCCCCCGGCCG CGGCTCCGCACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTCAAAATGTTAAGATTTTATTTACAAAGCTTCTTTGTTGTACAGAAAGT AAAAATGCTGTTACAATCTTGGTGTAACTGGTAGCCACAGGTGGTTGACTCACCAATCAC AGCTATCCACGCTACAGCAAGAGTCTTACACTGAGAACCTAAAACATCGCTTACAATTCT GTTGGGGTAAGTCCCCAAGCTTGGTGGTGGATTTCCAAGAGGGACTAAAATGGAGGAAGG CGGAATGTCACAGGAACTATTCTTTGGCTCTTTGGGTGGGTGGGTGTCCTGGGGTTTGTA TCACAGCTACTTTTTTTTTTTAAACAGCTACCAAATCCATATGAGCAGTCCAACCAATAC TGAACAGTTCTTTTTTTTGTTGGTTATTTGGGATCTTAATCATCTTCTCCTTCATCATCT GTTTCTCTCTTCCTCTTTTCACCTTTCTCGTTTTCTTCCTCCTCTTCATCCTCATCCTCA TCTTCATCCTCATCGTCTTCATCTTCATCGACTTCTCCATCATGTCCAAATTCTTCTTCC TCCCCACTGACTTCATCTTCATCCTCCTCCCCTTCTACATCTTCATCTTCATCTTCATCC TCTTCATCGTCAAACTCTTCTTCCTCGCCGTCCTCTTCCTCCTCCTTGTCTTCATCTTCT CCTTCTTCATCATCCTCTTCTTCATCCACACCATCCACCTCGGCATCTGAGTCAGGGGCT TCACCATCGTCTCTGTCATAGCCATCCAGGTAGCTCAGCTGGGGCAGGAGCTTGAAGACA CTCTCTCGATAGTCATTCAGGTTAGTAACCTCACAGTTAAAGAGATCCAGGCTTTTCAGA CACTCCAACTTTTTCAAAGGTTCCAGGGTGCTGATATCTTTCAGTTTATTTCCACTTAAG TTTAGATGTGTGAGATTTGGAAGTTTTTCTGCTAACATATCCAGACCTCCATAGATTCTA TTGTCACTGAGCTCAAGCTTTTTCAATTTAGGTAGTTTGGGGAGATTTGAAACTGAAATC AACCCTACATTTATTAAACTGAGGAACTCTAAGTTCACAAATTCAGCTGTTAAGCCCTCA ATTTTCCCATCACTTGATTTGCAATTATCCAGCACAAGTTCTCGAACAGCTGCCGGGGTC CGGTTCCTCAGCTCCAGGTGGATTCTCTTCTTCATGTCCATGTTTCCCTCTTCCCCCCTC TTCAAACTTAACTTTCCGCAACGGGGGCGGAGGGGGGAGAGGCTCCCAGCCTGCGCAGCG AGGGCCGTCGGAAGGGGTCTGCTCGAGGCAGAGGCCGGCGGCGCGGTCCGGGGCGGCTGG CGGCGTGCGGGCAGGAGAGCGGAGCCCCCGGAGCCAAGTTACTCACGGGAGCGGAGAGAA ACCATGGAGGGAAAGGGGGCTGGAGCGCAGCGCTGGTCTCACTACCGCCGCCCCCGGCCG CGGCTCCGCACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 6-434, gnl|bosTau2|chr10 (25320769-25321194) | |
| 6-434, gnl|Hg17|chr9 (97857629-97857230) | |
| 6-434, gnl|Mm7|chr4 (46486335-46485930) | |
| 439-739, gnl|bosTau2|chr8 (40821718-40822021) | |
| 443-688, gnl|bosTau2|chr3 (63929409-63929159) | |
| 443-688, gnl|Hg17|chr1 (52017937-52018151) | |
| 443-688, gnl|Mm7|chr4 (108390261-108390005) | |
| 819-982, gnl|bosTau2|chr8 (33193852-33193689) | |
| 819-982, gnl|canFam2|chr11 (58292727-58292882) | |
| 819-982, gnl|canFam2|chr37 (7676404-7676527) | |
| 819-982, gnl|danRer3|chr1 (27970483-27970275) | |
| 819-982, gnl|danRer3|chr1 (27970335-27970492) | |
| 819-982, gnl|dasNov1|scaffold_223843 (1389-1266) | |
| 819-982, gnl|dasNov1|scaffold_223843 (1264-1388) | |
| 819-982, gnl|echTel1|scaffold_278075 (43359-43211) | |
| 819-982, gnl|echTel1|scaffold_42821 (767-645) | |
| 819-982, gnl|fr1|chrUn (214123357-214123563) | |
| 819-982, gnl|fr1|chrUn (214123499-214123345) | |
| 819-982, gnl|galGal2|chr10 (19929622-19929476) | |
| 819-982, gnl|hg17|chr15 (73401578-73401700) | |
| 819-982, gnl|hg17|chr9 (97840372-97840527) | |
| 819-982, gnl|Hg17|chr9 (97840550-97840389) | |
| 819-982, gnl|loxAfr1|scaffold_8517 (106638-106760) | |
| 819-982, gnl|loxAfr1|scaffold_8517 (106782-106627) | |
| 819-982, gnl|mm7|chr4 (142802415-142802293) | |
| 819-982, gnl|mm7|chr4 (46477604-46477755) | |
| 819-982, gnl|Mm7|chr4 (46477773-46477619) | |
| 819-982, gnl|monDom2|scaffold_0 (101560546-101560667) | |
| 819-982, gnl|monDom2|scaffold_19 (13472335-13472501) | |
| 819-982, gnl|oryCun1|scaffold_116649 (390-268) | |
| 819-982, gnl|oryCun1|scaffold_175005 (5112-5269) | |
| 819-982, gnl|panTro1|chr11 (82058740-82058895) | |
| 819-982, gnl|panTro1|chr16_random (22496386-22496508) | |
| 819-982, gnl|rheMac2|chr15 (38231242-38231087) | |
| 819-982, gnl|rn3|chr1 (191017494-191017615) | |
| 819-982, gnl|rn3|chr5 (63048497-63048653) | |
| 819-982, gnl|tetNig1|chr18 (6480070-6479863) | |
| 819-982, gnl|tetNig1|chr18 (6479939-6480082) | |
| 819-982, gnl|xenTro1|scaffold_196 (501329-501207) | |
| 819-982, gnl|xenTro1|scaffold_196 (501185-501334) | |
| 1126-1452, gnl|bosTau2|chr8 (33181775-33181445) | |
| 1126-1452, gnl|Hg17|chr9 (97825448-97825122) | |
| 1126-1452, gnl|Mm7|chr4 (46465165-46464843) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-434, gnl|bosTau2|chr10 (25320769-25321194) | |
| 6-434, gnl|Hg17|chr9 (97857629-97857230) | |
| 6-434, gnl|Mm7|chr4 (46486335-46485930) | |
| 439-739, gnl|bosTau2|chr8 (40821718-40822021) | |
| 443-688, gnl|bosTau2|chr3 (63929409-63929159) | |
| 443-688, gnl|Hg17|chr1 (52017937-52018151) | |
| 443-688, gnl|Mm7|chr4 (108390261-108390005) | |
| 819-982, gnl|bosTau2|chr8 (33193852-33193689) | |
| 819-982, gnl|canFam2|chr11 (58292727-58292882) | |
| 819-982, gnl|canFam2|chr37 (7676404-7676527) | |
| 819-982, gnl|danRer3|chr1 (27970483-27970275) | |
| 819-982, gnl|danRer3|chr1 (27970335-27970492) | |
| 819-982, gnl|dasNov1|scaffold_223843 (1389-1266) | |
| 819-982, gnl|dasNov1|scaffold_223843 (1264-1388) | |
| 819-982, gnl|echTel1|scaffold_278075 (43359-43211) | |
| 819-982, gnl|echTel1|scaffold_42821 (767-645) | |
| 819-982, gnl|fr1|chrUn (214123357-214123563) | |
| 819-982, gnl|fr1|chrUn (214123499-214123345) | |
| 819-982, gnl|galGal2|chr10 (19929622-19929476) | |
| 819-982, gnl|hg17|chr15 (73401578-73401700) | |
| 819-982, gnl|hg17|chr9 (97840372-97840527) | |
| 819-982, gnl|Hg17|chr9 (97840550-97840389) | |
| 819-982, gnl|loxAfr1|scaffold_8517 (106638-106760) | |
| 819-982, gnl|loxAfr1|scaffold_8517 (106782-106627) | |
| 819-982, gnl|mm7|chr4 (142802415-142802293) | |
| 819-982, gnl|mm7|chr4 (46477604-46477755) | |
| 819-982, gnl|Mm7|chr4 (46477773-46477619) | |
| 819-982, gnl|monDom2|scaffold_0 (101560546-101560667) | |
| 819-982, gnl|monDom2|scaffold_19 (13472335-13472501) | |
| 819-982, gnl|oryCun1|scaffold_116649 (390-268) | |
| 819-982, gnl|oryCun1|scaffold_175005 (5112-5269) | |
| 819-982, gnl|panTro1|chr11 (82058740-82058895) | |
| 819-982, gnl|panTro1|chr16_random (22496386-22496508) | |
| 819-982, gnl|rheMac2|chr15 (38231242-38231087) | |
| 819-982, gnl|rn3|chr1 (191017494-191017615) | |
| 819-982, gnl|rn3|chr5 (63048497-63048653) | |
| 819-982, gnl|tetNig1|chr18 (6480070-6479863) | |
| 819-982, gnl|tetNig1|chr18 (6479939-6480082) | |
| 819-982, gnl|xenTro1|scaffold_196 (501329-501207) | |
| 819-982, gnl|xenTro1|scaffold_196 (501185-501334) | |
| 1126-1452, gnl|bosTau2|chr8 (33181775-33181445) | |
| 1126-1452, gnl|Hg17|chr9 (97825448-97825122) | |
| 1126-1452, gnl|Mm7|chr4 (46465165-46464843) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| lun (0.451467) | |
| spl (0.429553) | |
| jca (0.34188) | |
| ski (0.29347) | |
| liv (0.292569) | |
| nca (0.273748) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eru (0.240096) | |
| med (0.232504) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.451467) | |
| spl (0.429553) | |
| jca (0.34188) | |
| ski (0.29347) | |
| liv (0.292569) | |
| nca (0.273748) | |
| sug (0.254582) | |
| ese (0.253004) | |
| eru (0.240096) | |
| med (0.232504) | |
| spc (0.226732) | |
| tes (0.207814) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nco (0.161734) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| ova (0.129132) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |