Non-Coding RNA Search

Ss1.1-Liv1-LVR010099E05.5

Sequence:


               
               CTTGATCACGTGAGCCGGGTCCAAGATGGCGGCAGGGGTGGCCGGGTGGGGGGTTGAGGC
AGAGGAGTTCGAGGATGCCCCTGATGTGGAGCCGCTGGAGCCCACGCTTAGCAACATCAT
CGAGCAGCGTAGCCTTAAGTGGATCTTCGTTGGGGGCAAGGGTGGCGTTGGCAAGACCAC
CTGCAGCTGCAGCCTAGCAGTCCAGCTCTCCAAAGGGCGGGAGAGTGTTCTGATCATCTC
TACAGACCCAGCCCACAACATCTCTGATGCATTTGACCAGAAGTTCTCCAAGGTGCCTAC
CAAGGTCAAAGGCTATGACAACCTCTTCGCCATGGAGATTGACCCCAGCCTGGGCGTGGC
AGAGCTGCCCGACGAGTTCTTCGAGGAGGACAACATGCTGAGCATGGGCAAGAAGATGAT
GCAGGAAGCCATGAGCGCCTTCCCGGGCATCGACGAGGCCATGAGCTATGCAGAGGTCAT
GAGGCTGGTGAAGGGCATGAACTTCTCGGTGGTGGTGTTTGACACGGCGCCCACGGGCCA
CACACTGAGGCTGCTCAACTTCCCCACCATCGTCGAGCGGGGGCTAGGCCGCCTCATGCA
GATCAAGAACCAGATCAGCCCCTTCATCTCACAGATGTGCAATATGCTGGGCCTCGGGGA
CATGAACGCAGACCAGCTGGCCTCCAAGCTGGAGGAGACACTGCCTGTCATCCGCTCTGT
CAGCGAACAGTTCAAGGATCCTGAGCAAACAACCTTCATCTGTGTGTGCATCGCGGAGTT
CCTCTCACTGTATGAGACGGAGCGGCTGATCCAGGAGCTGGCCAAGTGCAAGATTGACAC
GCACAACATCATTGTCAACCAGCTAGTCTTCCCTGATCCCGAGAAGCCCTGCAAGATGTG
TGAGGCCCGCCACAAGATCCAGGCCAAGTACCTGGACCAGATGGAGGACCTATATGAAGA
TTTCCACATTGTGAAGCTGCCGCTGCTGCCCCACGAGGTTCGGGGGGCAGACAAGGTCAA
CACCTTTTCTGCTCTTCTCCTGGAGCCCTATAAGCCCCCCAGTGCCCAGTAGCACCAACA
GCCCCAGCTGCTGCCATTTCACACCCATCCTCCAGCCCCCACCCCTGGGGCAGAGTTTGC
ACAAAGTTCCTCCATAGCATAGGGGGAGCCACTTGGGGGGTGGGAGGCGAGGAGGGGGTC
TTTTCCCCCTGGTGGGGCTGGGGGAGCTGTAGCTGCCCCTCCCCCATCTCCCTGCCTCTC
CCCCCTCAATAAAATGATCTTAAACTACTGTGGATGTTGATATTCAGTTTGGGGGCTTAG
CACGTACATGGACAGTTGCACAGGCTGTACACTGCACAAAGATAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGATCACGTGAGCCGGGTCCAAGATGGCGGCAGGGGTGGCCGGGTGGGGGGTTGAGGC
AGAGGAGTTCGAGGATGCCCCTGATGTGGAGCCGCTGGAGCCCACGCTTAGCAACATCAT
CGAGCAGCGTAGCCTTAAGTGGATCTTCGTTGGGGGCAAGGGTGGCGTTGGCAAGACCAC
CTGCAGCTGCAGCCTAGCAGTCCAGCTCTCCAAAGGGCGGGAGAGTGTTCTGATCATCTC
TACAGACCCAGCCCACAACATCTCTGATGCATTTGACCAGAAGTTCTCCAAGGTGCCTAC
CAAGGTCAAAGGCTATGACAACCTCTTCGCCATGGAGATTGACCCCAGCCTGGGCGTGGC
AGAGCTGCCCGACGAGTTCTTCGAGGAGGACAACATGCTGAGCATGGGCAAGAAGATGAT
GCAGGAAGCCATGAGCGCCTTCCCGGGCATCGACGAGGCCATGAGCTATGCAGAGGTCAT
GAGGCTGGTGAAGGGCATGAACTTCTCGGTGGTGGTGTTTGACACGGCGCCCACGGGCCA
CACACTGAGGCTGCTCAACTTCCCCACCATCGTCGAGCGGGGGCTAGGCCGCCTCATGCA
GATCAAGAACCAGATCAGCCCCTTCATCTCACAGATGTGCAATATGCTGGGCCTCGGGGA
CATGAACGCAGACCAGCTGGCCTCCAAGCTGGAGGAGACACTGCCTGTCATCCGCTCTGT
CAGCGAACAGTTCAAGGATCCTGAGCAAACAACCTTCATCTGTGTGTGCATCGCGGAGTT
CCTCTCACTGTATGAGACGGAGCGGCTGATCCAGGAGCTGGCCAAGTGCAAGATTGACAC
GCACAACATCATTGTCAACCAGCTAGTCTTCCCTGATCCCGAGAAGCCCTGCAAGATGTG
TGAGGCCCGCCACAAGATCCAGGCCAAGTACCTGGACCAGATGGAGGACCTATATGAAGA
TTTCCACATTGTGAAGCTGCCGCTGCTGCCCCACGAGGTTCGGGGGGCAGACAAGGTCAA
CACCTTTTCTGCTCTTCTCCTGGAGCCCTATAAGCCCCCCAGTGCCCAGTAGCACCAACA
GCCCCAGCTGCTGCCATTTCACACCCATCCTCCAGCCCCCACCCCTGGGGCAGAGTTTGC
ACAAAGTTCCTCCATAGCATAGGGGGAGCCACTTGGGGGGTGGGAGGCGAGGAGGGGGTC
TTTTCCCCCTGGTGGGGCTGGGGGAGCTGTAGCTGCCCCTCCCCCATCTCCCTGCCTCTC
CCCCCTCAATAAAATGATCTTAAACTACTGTGGATGTTGATATTCAGTTTGGGGGCTTAG
CACGTACATGGACAGTTGCACAGGCTGTACACTGCACAAAGATAGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               ARSA1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               ARSA1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               977-1322, - strand, RNAz p=0.999302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               977-1322, - strand, RNAz p=0.999302

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-186, gnl|bosTau2|chr7 (8440850-8441035)
               

               
               1-186, gnl|Hg17|chr19 (12709295-12709480)
               

               
               1-186, gnl|Mm7|chr8 (83613866-83613681)
               


               
               482-634, gnl|bosTau2|chr7 (8445912-8446064)
               

               
               482-634, gnl|Hg17|chr19 (12717421-12717573)
               

               
               482-634, gnl|Mm7|chr8 (83608083-83607931)
               


               
               938-1363, gnl|bosTau2|chr7 (8448608-8449029)
               

               
               938-1363, gnl|Hg17|chr19 (12719784-12720211)
               

               
               938-1363, gnl|Mm7|chr8 (83606667-83606270)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr7 (8440850-8441035)
               

               
               1-186, gnl|Hg17|chr19 (12709295-12709480)
               

               
               1-186, gnl|Mm7|chr8 (83613866-83613681)
               


               
               482-634, gnl|bosTau2|chr7 (8445912-8446064)
               

               
               482-634, gnl|Hg17|chr19 (12717421-12717573)
               

               
               482-634, gnl|Mm7|chr8 (83608083-83607931)
               


               
               938-1363, gnl|bosTau2|chr7 (8448608-8449029)
               

               
               938-1363, gnl|Hg17|chr19 (12719784-12720211)
               

               
               938-1363, gnl|Mm7|chr8 (83606667-83606270)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.770713)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               lnt (0.284616)
               

               
               cly (0.241284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-186, gnl\|bosTau2\|chr7 (8440850-8441035)
	1-186, gnl\|Hg17\|chr19 (12709295-12709480)
	1-186, gnl\|Mm7\|chr8 (83613866-83613681)

	482-634, gnl\|bosTau2\|chr7 (8445912-8446064)
	482-634, gnl\|Hg17\|chr19 (12717421-12717573)
	482-634, gnl\|Mm7\|chr8 (83608083-83607931)

	938-1363, gnl\|bosTau2\|chr7 (8448608-8449029)
	938-1363, gnl\|Hg17\|chr19 (12719784-12720211)
	938-1363, gnl\|Mm7\|chr8 (83606667-83606270)

	elu (0.770713)
	lnt (0.284616)
	cly (0.241284)
	hyp (0.142837)
	nca (0.136874)
	ute (0.132784)
	eep (0.122564)
	cty (0.10408)
	nbm (0.0993246)