Non-Coding RNA Search

Ss1.1-Liv1-LVR010099G09.5.5

Sequence:


               
               AAAATGGGCCATTCGCTTCCGGCACCGGGGAGCCAGGCTGGGGTCGCTGAGGGGTGAGGT
CGGGGCTTCGGGGGCATTGACCTTTCCTGTCTGTCCGCCGTGCAGTCCTTGACCGTAGAG
CCGATCGGCCGGAACTGGCGCACAGGCCCCGGCGCCCTCTGGCTGCGCCATGGTCCAGCT
CACTACTGTTCTGTGCAGGGCCTACCGTGGAGGCCATTTAACCATCCGCCTTGCCCTGGG
TGGCTGTACCAACCGGCCTTTCTACCGCATCGTGGCTGCTCACAGCAAGTGTCCCAGGGA
TGGCCGTTTTGTAGAGCAGCTGGGCTCCTATGATCCGCTGCCCAACAGTCATGGAGAGAA
ACTCGTAGCTCTCAACTTCGACCGGATCAGACATTGGATTGGCTGTGGGGCCCACCTCTC
TAAGCCTGTGGAAAAGCTCCTGGGTCTTTCTGGCTTTTACCCTCTGCATCCCATGATGAT
CACAAATGCTGAGAGACTGCGACGGAAACGGGCACGAGAAGTCCTCTTAGCGTCTCAGAA
AACAGATACAGAGGCTACAGAAACAAAAGCGAGCTGACTTAAATGAGTGTAGCAGTGGAA
ATAAGTTTAAGTCCAATTAAAACATTTGTGCAGAACTCTTAGTTTTATTAGACTTAGAGG
TTAATAAATGTAGTTTTTAAAGTCACCCATGCTTTTCTGGCCTGAACAGGGCTCAGGGAA
GGTTTGTTCTTGATTGACGTAAAGCTGGTATAGGTACTAATTAGCTTTTTCAGCCTTCAT
CTGGGGAAAACAGTGGTTGTGGGGTGGGTTGGATTCTGCCTCTATTGGACAACTTTTTAG
CCTGCTGCCTTCCAAGACTTCCCTGTTTCAAAGCTGCCAACCAGAATGTTCATGGCCTAT
CCAAGTAATTCTTCCTGTAATCATTTGCGATCATCCCACCAACTCAAGAACACAGTTACC
TCCAAGGTAGGTTTGTTATGAGCTTTTAGGCTACTTTTTAAGAATGAATAGTTGAAAGAA
AGATAATGTTGTAAAGTACCTACATACATTCTAGGCCTTTTCCATGCAAGATTATTTTTG
AGAATTACAAGGTATCATGAAGTTAGGTAGGGTTATCTCCAATTTATAGGTGAGGAAGCT
GAGGTTTGGAAGTAGGCCACATAGTTTTAATAATGGGCAGAGCTAAGAGTCAACCCTCAG
TGTGCCTACCTGGAGTCCTTTTCCAACATGTTATATTGTCAGTGGTGGAGGAATTGAGCA
AAAATGAGGGGCTTTACAAAAGTCCACTTAAAAAGTCAGTGATAGAATCAGGTTTAGGTA
TCATGATTTGGTAATGTAAATGACTAGTTGTGCCAAAAACAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATGGGCCATTCGCTTCCGGCACCGGGGAGCCAGGCTGGGGTCGCTGAGGGGTGAGGT
CGGGGCTTCGGGGGCATTGACCTTTCCTGTCTGTCCGCCGTGCAGTCCTTGACCGTAGAG
CCGATCGGCCGGAACTGGCGCACAGGCCCCGGCGCCCTCTGGCTGCGCCATGGTCCAGCT
CACTACTGTTCTGTGCAGGGCCTACCGTGGAGGCCATTTAACCATCCGCCTTGCCCTGGG
TGGCTGTACCAACCGGCCTTTCTACCGCATCGTGGCTGCTCACAGCAAGTGTCCCAGGGA
TGGCCGTTTTGTAGAGCAGCTGGGCTCCTATGATCCGCTGCCCAACAGTCATGGAGAGAA
ACTCGTAGCTCTCAACTTCGACCGGATCAGACATTGGATTGGCTGTGGGGCCCACCTCTC
TAAGCCTGTGGAAAAGCTCCTGGGTCTTTCTGGCTTTTACCCTCTGCATCCCATGATGAT
CACAAATGCTGAGAGACTGCGACGGAAACGGGCACGAGAAGTCCTCTTAGCGTCTCAGAA
AACAGATACAGAGGCTACAGAAACAAAAGCGAGCTGACTTAAATGAGTGTAGCAGTGGAA
ATAAGTTTAAGTCCAATTAAAACATTTGTGCAGAACTCTTAGTTTTATTAGACTTAGAGG
TTAATAAATGTAGTTTTTAAAGTCACCCATGCTTTTCTGGCCTGAACAGGGCTCAGGGAA
GGTTTGTTCTTGATTGACGTAAAGCTGGTATAGGTACTAATTAGCTTTTTCAGCCTTCAT
CTGGGGAAAACAGTGGTTGTGGGGTGGGTTGGATTCTGCCTCTATTGGACAACTTTTTAG
CCTGCTGCCTTCCAAGACTTCCCTGTTTCAAAGCTGCCAACCAGAATGTTCATGGCCTAT
CCAAGTAATTCTTCCTGTAATCATTTGCGATCATCCCACCAACTCAAGAACACAGTTACC
TCCAAGGTAGGTTTGTTATGAGCTTTTAGGCTACTTTTTAAGAATGAATAGTTGAAAGAA
AGATAATGTTGTAAAGTACCTACATACATTCTAGGCCTTTTCCATGCAAGATTATTTTTG
AGAATTACAAGGTATCATGAAGTTAGGTAGGGTTATCTCCAATTTATAGGTGAGGAAGCT
GAGGTTTGGAAGTAGGCCACATAGTTTTAATAATGGGCAGAGCTAAGAGTCAACCCTCAG
TGTGCCTACCTGGAGTCCTTTTCCAACATGTTATATTGTCAGTGGTGGAGGAATTGAGCA
AAAATGAGGGGCTTTACAAAAGTCCACTTAAAAAGTCAGTGATAGAATCAGGTTTAGGTA
TCATGATTTGGTAATGTAAATGACTAGTTGTGCCAAAAACAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61869918|ref|XP_588124.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869918|ref|XP_588124.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               443-962, gnl|bosTau2|chr28 (22521327-22520801)
               

               
               443-962, gnl|Hg17|chr10 (74680756-74680222)
               

               
               443-962, gnl|Mm7|chr14 (18048018-18047538)
               


               
               964-1352, gnl|bosTau2|chr28 (22520738-22520353)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               443-962, gnl|bosTau2|chr28 (22521327-22520801)
               

               
               443-962, gnl|Hg17|chr10 (74680756-74680222)
               

               
               443-962, gnl|Mm7|chr14 (18048018-18047538)
               


               
               964-1352, gnl|bosTau2|chr28 (22520738-22520353)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               elu (0.385356)
               

               
               nep (0.36785)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.36785)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cty (0.20816)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               cbl (0.114797)

	443-962, gnl\|bosTau2\|chr28 (22521327-22520801)
	443-962, gnl\|Hg17\|chr10 (74680756-74680222)
	443-962, gnl\|Mm7\|chr14 (18048018-18047538)

	964-1352, gnl\|bosTau2\|chr28 (22520738-22520353)

	elu (0.385356)
	nep (0.36785)
	sme (0.305437)
	spl (0.286369)
	cty (0.20816)
	ton (0.1755)
	duo (0.172801)
	cut (0.169924)
	cje (0.165235)
	tbr (0.154178)
	liv (0.146284)
	hyp (0.142837)
	ssp (0.13552)
	pla (0.133672)
	cly (0.120642)
	cbl (0.114797)