Ss1.1-Liv1-LVR010100A06.5
|
CAAGCTTCAGGAAGGTACATAGAGTCCAATCCAATTTCAGGTTTGTTCTCTCCCCCACCC
CCCACCCCCTGCCTTGTCCAAGGACACAGACTAGCCTTTGGCTGGCAGGTCACACTCCAC
GTGTATATAAGACTTTGCTAACAAGCAATCCAGACAGTTACTAACATTGAGTAGCTGAGA
TGGAGCTGCTGGGAATCACTACCCTTGCTCTTATGGTTTGTGTTACTTGCCTGGTTTTCC
TTTCTGTGTGGAAGAAAAATCACAAGAGGAGAAGGCTCCCCCCGGGCCCAACTCCCCTTC
CCATCATTGGGAATCTGATGCAACTTAACCTCAAGGACATCCCTGCGTCTCTTTCCAAGT
TGGCCAAACAGTACGGCCCTGTTTGTACTGTGTACTTTGGATCCCAGCCTGCCGTGGTCT
TACATGGATATGAAGCAGTGAAGGAAGCTCTGATTGATCAGGGGGATGAATTCCTTGGCA
GAGGAATTATTCCAATTATCGATGATACCCAGGGAGGATATGGACTCGTATTCAGTAATG
GAGAGAGGTGGAAGCAAATACGGCGCTTCTCCCTCATGACCCTGAGGAACTTTGGGATGG
GGAAGAGGAGCCTCGAGGAGAGGGTCCAGGAGGAAGCCCAGTTTCTGGTGGAGGAGCTCA
GGAAAACAGAGGCTCAGCCCTTTGACCCTACCTTCATCCTCTCCTGTGCTCCCTGCAATG
TGATCTGCTCCATCCTCTTCAATGACCGTTTCCACTACGACAATGAGACATTTCTCTCTC
TGATGAATCTGTTAAATGCAAATTTTCGTCAAATAAGCTCTCCCTGGATCCAGATTTACA
ATCTATGGCCGCAAATCATAAAGCATCTCCCTGGAGAGCACAGAGCATTTTCAAAAAGGC
TTAAAGACTGTAGGTCTTTTATTCTGGAAAAAGTAAAGGAGCATCAAAAGTCCCCGAATC
TTAACAACCCTCAAGACTACATTGACTGTTTCCTCAGCAAGATGGAGCAGGAAAAACAGA
ACCCAGACTCTGAATTTCACCTGAAGAACTTGATAAACTCCGGAACAAATTTGTTTGTAG
CAGGAACAGAGACAACCACTAGCACCCTGAGATATGGGCTCCTGCTCCTAATGAAACACC
CTGAGGTTCAAGCCAAAGTTCATGAAGAAATTGACCGTGTGATTGGACGCAGCCAACGTC
CCTGCATGCAGGACAAGATGAAGCTGCCCTACACAGAGGCCGTGTTGCATGAGATACAGA
GATACATCGCCTTACTTCCTTCTAACTTACCCCATGCCACAGTCCGGGACACGAAATTCA
GAGAGTACATCATCCCCAAGGGCACTACTGTATTGCCGCTACTGTCTTCAGTCTTACACG
ATTGCAAGGAGTTTCCCAATCCAGAGAAGTTTGACCCAGGCCACTTTTTGGATAAAGATG
GCAGCTTCAGGAAAACGGAATACTTCGTGCCTTTCTCCATTGGGAAACGGGCCTGTGCTG
GAGAGAGCCTGGCTCGCATGGAGCTCTTCCTGTTCTTCACCACCATTCTGCAACACTTTG
TCCTGAAGCCCCTGAAGGAGCCAAAGGACCTAGAGACCAAACCCATTTCGGTTGGGCTTT
TCAACTTGCCACCACCCTTCAAGCTGTGCCTCATCCCTAGATAAAGGAAGATCTTCTTTT
ACCAATTGAAATCAAAGTAATTGCTTTTTCCTCTCACTCCTCCTACCCAAATTGTCTCTC
TCTGCATTTTAGATATTGCCTGGGACAGAAACACTAATCATTAAACTCTGACGGACATTT
GTTTAAGTCTACAAATCTCTTGACAAAAAGGAACAGCGTCCTGAAAGTTCCAAGGGTCAA
GCAGTATACTTATACCCTAGAGAGTACTTTAGCAACTGTGGTCTAGCCGAAGGCCTTTAT
CAGGCAATCAGCAAATAATGCAGCCTTCACTCTTTCTGTGACTTTGGAGATACGCTGATT
TGCTATAGTTTTTCAAAATAGAGAAATTAATATAATCGCCCATGTGCAATGGTTTTCCTC
TTTTCACTCGAAAATGCATGATTTCTGCCACGTGACAAAATAAATCCTTTTTTCCCACAA
TAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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CAAGCTTCAGGAAGGTACATAGAGTCCAATCCAATTTCAGGTTTGTTCTCTCCCCCACCC
CCCACCCCCTGCCTTGTCCAAGGACACAGACTAGCCTTTGGCTGGCAGGTCACACTCCAC
GTGTATATAAGACTTTGCTAACAAGCAATCCAGACAGTTACTAACATTGAGTAGCTGAGA
TGGAGCTGCTGGGAATCACTACCCTTGCTCTTATGGTTTGTGTTACTTGCCTGGTTTTCC
TTTCTGTGTGGAAGAAAAATCACAAGAGGAGAAGGCTCCCCCCGGGCCCAACTCCCCTTC
CCATCATTGGGAATCTGATGCAACTTAACCTCAAGGACATCCCTGCGTCTCTTTCCAAGT
TGGCCAAACAGTACGGCCCTGTTTGTACTGTGTACTTTGGATCCCAGCCTGCCGTGGTCT
TACATGGATATGAAGCAGTGAAGGAAGCTCTGATTGATCAGGGGGATGAATTCCTTGGCA
GAGGAATTATTCCAATTATCGATGATACCCAGGGAGGATATGGACTCGTATTCAGTAATG
GAGAGAGGTGGAAGCAAATACGGCGCTTCTCCCTCATGACCCTGAGGAACTTTGGGATGG
GGAAGAGGAGCCTCGAGGAGAGGGTCCAGGAGGAAGCCCAGTTTCTGGTGGAGGAGCTCA
GGAAAACAGAGGCTCAGCCCTTTGACCCTACCTTCATCCTCTCCTGTGCTCCCTGCAATG
TGATCTGCTCCATCCTCTTCAATGACCGTTTCCACTACGACAATGAGACATTTCTCTCTC
TGATGAATCTGTTAAATGCAAATTTTCGTCAAATAAGCTCTCCCTGGATCCAGATTTACA
ATCTATGGCCGCAAATCATAAAGCATCTCCCTGGAGAGCACAGAGCATTTTCAAAAAGGC
TTAAAGACTGTAGGTCTTTTATTCTGGAAAAAGTAAAGGAGCATCAAAAGTCCCCGAATC
TTAACAACCCTCAAGACTACATTGACTGTTTCCTCAGCAAGATGGAGCAGGAAAAACAGA
ACCCAGACTCTGAATTTCACCTGAAGAACTTGATAAACTCCGGAACAAATTTGTTTGTAG
CAGGAACAGAGACAACCACTAGCACCCTGAGATATGGGCTCCTGCTCCTAATGAAACACC
CTGAGGTTCAAGCCAAAGTTCATGAAGAAATTGACCGTGTGATTGGACGCAGCCAACGTC
CCTGCATGCAGGACAAGATGAAGCTGCCCTACACAGAGGCCGTGTTGCATGAGATACAGA
GATACATCGCCTTACTTCCTTCTAACTTACCCCATGCCACAGTCCGGGACACGAAATTCA
GAGAGTACATCATCCCCAAGGGCACTACTGTATTGCCGCTACTGTCTTCAGTCTTACACG
ATTGCAAGGAGTTTCCCAATCCAGAGAAGTTTGACCCAGGCCACTTTTTGGATAAAGATG
GCAGCTTCAGGAAAACGGAATACTTCGTGCCTTTCTCCATTGGGAAACGGGCCTGTGCTG
GAGAGAGCCTGGCTCGCATGGAGCTCTTCCTGTTCTTCACCACCATTCTGCAACACTTTG
TCCTGAAGCCCCTGAAGGAGCCAAAGGACCTAGAGACCAAACCCATTTCGGTTGGGCTTT
TCAACTTGCCACCACCCTTCAAGCTGTGCCTCATCCCTAGATAAAGGAAGATCTTCTTTT
ACCAATTGAAATCAAAGTAATTGCTTTTTCCTCTCACTCCTCCTACCCAAATTGTCTCTC
TCTGCATTTTAGATATTGCCTGGGACAGAAACACTAATCATTAAACTCTGACGGACATTT
GTTTAAGTCTACAAATCTCTTGACAAAAAGGAACAGCGTCCTGAAAGTTCCAAGGGTCAA
GCAGTATACTTATACCCTAGAGAGTACTTTAGCAACTGTGGTCTAGCCGAAGGCCTTTAT
CAGGCAATCAGCAAATAATGCAGCCTTCACTCTTTCTGTGACTTTGGAGATACGCTGATT
TGCTATAGTTTTTCAAAATAGAGAAATTAATATAATCGCCCATGTGCAATGGTTTTCCTC
TTTTCACTCGAAAATGCATGATTTCTGCCACGTGACAAAATAAATCCTTTTTTCCCACAA
TAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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76-359, gnl|bosTau2|chr26 (11836533-11836247) |
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76-359, gnl|canFam2|chr28 (44111808-44111591) |
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76-359, gnl|dasNov1|scaffold_49743 (508-303) |
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76-359, gnl|echTel1|scaffold_107700 (583-789) |
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76-359, gnl|hg17|chr10 (101889736-101889918) |
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76-359, gnl|Hg17|chr10 (101890139-101889741) |
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76-359, gnl|loxAfr1|scaffold_36658 (25157-25363) |
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76-359, gnl|mm7|chr19 (43922876-43923075) |
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76-359, gnl|Mm7|chr19 (43923170-43922881) |
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76-359, gnl|oryCun1|scaffold_137209 (1167-1363) |
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76-359, gnl|panTro1|chr8 (103632952-103633134) |
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76-359, gnl|rheMac2|chr9 (99738098-99738300) |
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76-359, gnl|rn3|chr1 (249463096-249462897) |
| |
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537-677, gnl|bosTau2|chr18 (44617841-44617701) |
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537-677, gnl|Hg17|chr19 (46202056-46202196) |
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537-677, gnl|Mm7|chr7 (23656615-23656755) |
| |
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832-1011, gnl|bosTau2|chr26 (11819413-11819234) |
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832-1011, gnl|Hg17|chr10 (135235075-135235254) |
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832-1011, gnl|Mm7|chr19 (43908955-43908776) |
| |
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1151-1341, gnl|bosTau2|chr26 (11814233-11814043) |
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1151-1341, gnl|Hg17|chr10 (101867192-101867016) |
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1151-1341, gnl|Mm7|chr19 (43906345-43906155) |
| |
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1482-1773, gnl|bosTau2|chr26 (11809336-11809040) |
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1482-1773, gnl|Mm7|chr19 (43899496-43899221) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
76-359, gnl|bosTau2|chr26 (11836533-11836247) |
|
76-359, gnl|canFam2|chr28 (44111808-44111591) |
|
76-359, gnl|dasNov1|scaffold_49743 (508-303) |
|
76-359, gnl|echTel1|scaffold_107700 (583-789) |
|
76-359, gnl|hg17|chr10 (101889736-101889918) |
|
76-359, gnl|Hg17|chr10 (101890139-101889741) |
|
76-359, gnl|loxAfr1|scaffold_36658 (25157-25363) |
|
76-359, gnl|mm7|chr19 (43922876-43923075) |
|
76-359, gnl|Mm7|chr19 (43923170-43922881) |
|
76-359, gnl|oryCun1|scaffold_137209 (1167-1363) |
|
76-359, gnl|panTro1|chr8 (103632952-103633134) |
|
76-359, gnl|rheMac2|chr9 (99738098-99738300) |
|
76-359, gnl|rn3|chr1 (249463096-249462897) |
| |
|
537-677, gnl|bosTau2|chr18 (44617841-44617701) |
|
537-677, gnl|Hg17|chr19 (46202056-46202196) |
|
537-677, gnl|Mm7|chr7 (23656615-23656755) |
| |
|
832-1011, gnl|bosTau2|chr26 (11819413-11819234) |
|
832-1011, gnl|Hg17|chr10 (135235075-135235254) |
|
832-1011, gnl|Mm7|chr19 (43908955-43908776) |
| |
|
1151-1341, gnl|bosTau2|chr26 (11814233-11814043) |
|
1151-1341, gnl|Hg17|chr10 (101867192-101867016) |
|
1151-1341, gnl|Mm7|chr19 (43906345-43906155) |
| |
|
1482-1773, gnl|bosTau2|chr26 (11809336-11809040) |
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1482-1773, gnl|Mm7|chr19 (43899496-43899221) |
|
lun (6.47103) |
|
cki (3.30469) |
|
kid (1.55682) |
|
cli (0.91687) |
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fli (0.405762) |
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cte (0.29274) |
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eli (0.151814) |
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lun (6.47103) |
|
cki (3.30469) |
|
kid (1.55682) |
|
cli (0.91687) |
|
fli (0.405762) |
|
cte (0.29274) |
|
eli (0.151814) |
