Non-Coding RNA Search

Ss1.1-Liv1-LVR010100D02.5

Sequence:


               
               TTTTTTTTTTTTTAGAGAGCAACACTTTTTTTTATTCCTAGGTTCAGCCTGCTGCGGTCC
CCTCCACTGCTCCCCAGATCCCCTAAGATCATGCCCCTCCTCCTCTCCCAAGGCACCCTC
CAGGGGAGGTGACAAAGGGGGCAGTGAAGGGGGTGGAGGAGAAACACCTTTATTAGAAGA
GCAGTGTGGACAGAAGGGGGAATGGAGTGAGAGCACGTGAGAGGTGGGGTCCAAGGAGCC
AGCGCCTTTCTCAATGCCCCTCCAGGGAGCTGAGCGGAGACGGGTGGGCTCGCCCCTGGC
CCAGCACCACCAAGGCCCTGTGCTCCTATGGAGAGGGCCTCATGGATGAGACGGAGGCAG
GAGGCCTGGGGTTCCCACGGAGAAGGGGTGAGAAGCCACCGGGTTTCACCGATCCATGCT
GTCATCCGTGGGGGTGGAGAAACAAGTCTGTAGCAGCTTTTCACAGAACTCCAGCTCCTC
CTGGTACTCCTCACGCTGCTGCAGCAGCTGGCAGCGGTGCCGCAGAAGCTCCTCCAGGCC
CAGCTCAGGCTCCCGGCACTCCCGCACACCCTGGGGGAAGTCTGTCACCAAGCTGCACAG
GGCTCCAAGCACGTGCTCATGGAAGGGGCTGTGTTCTGTCCGGACGAGGGCCACCAGCTG
CTGGACCATGCCCATGGAGCACAGGGTCCCTTTGTGTTCAGGGTGGCCCACCAGCAGGTT
CTGCAGCAGGAACGCCGACTTGACCTTGAGCTTTTGCACTTGCTGCTGCATGGCCCGCAT
CAAGACAGAGAAGCCGTCCAGACGGAGGAACTGCAGCAGCCCGGCCTCCTGCTCCCGGAC
CAGGCAGGAGATGGCGAAGAGGGCCTTGACGCGCACCGAGTCGCAGGGGTCCCGATCCAG
CAGGCGCAGCAGCTTGCGCAGGGCACCGAGGCCCAGCACCTGCTCCTGGATGGCCGCCAC
GTTCTGGCTGCATGTGCCGATGAGTTGTGCCGCCCGCCACCGCAGCCCCGCGGGGCCCGC
CTCCAGGTAGCGGCCTACCAGCAGGTGCATGCCAGATAGCTGGCAGAAGTCTGCAGCGTT
GTCCATGTTCTCACACAGGTCGGCCAGCAGCTCCAGGGCCCCCTCACGCTCCTGCTGGTC
AGCAGCCAGTTCAGCTTCACCAGCTGAGGAGGGTGTGGGCTGGGACAGCACCCGGAGGCA
GTTCTTCATCTGCTCCACCTCCTCTCGCTGGCCCCGGAAGGCGGCCGACATGGCCTCCTG
CAGCCACTGGCGCCTCTCCTCACTCATGGGTTCTGGAGGTGGGTCTGGCTCTTCAGAGCC
CGCCGTGATGGCCATCTGCAGCAGACCTTGGAGGTTTCGCGGGGGTGGGGGGTTGCCCGA
GCCCCCAGCAGAGGAGCCGCTGCCCCCTGACGAGCAACCCTGAGAGGCTGGGGGCAGCGC
CAGGGGAAGGCGGCTGCCCCCAGAGCCTTGGTCCGCCATGGGCTGTTTGCGAAGAAGGGA
CGAATGTGCTGGGGTAGGGGATGGTCACCGCTGAGGTAGCGCGGGCTTCCTGACCGGTCG
ACTCCTGGAGGTCTCCCCGGGCCTCGTGTCGCCGCCGCTACTAAAGACAGAGTCGCCCGC
ACCTGACTACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTAGAGAGCAACACTTTTTTTTATTCCTAGGTTCAGCCTGCTGCGGTCC
CCTCCACTGCTCCCCAGATCCCCTAAGATCATGCCCCTCCTCCTCTCCCAAGGCACCCTC
CAGGGGAGGTGACAAAGGGGGCAGTGAAGGGGGTGGAGGAGAAACACCTTTATTAGAAGA
GCAGTGTGGACAGAAGGGGGAATGGAGTGAGAGCACGTGAGAGGTGGGGTCCAAGGAGCC
AGCGCCTTTCTCAATGCCCCTCCAGGGAGCTGAGCGGAGACGGGTGGGCTCGCCCCTGGC
CCAGCACCACCAAGGCCCTGTGCTCCTATGGAGAGGGCCTCATGGATGAGACGGAGGCAG
GAGGCCTGGGGTTCCCACGGAGAAGGGGTGAGAAGCCACCGGGTTTCACCGATCCATGCT
GTCATCCGTGGGGGTGGAGAAACAAGTCTGTAGCAGCTTTTCACAGAACTCCAGCTCCTC
CTGGTACTCCTCACGCTGCTGCAGCAGCTGGCAGCGGTGCCGCAGAAGCTCCTCCAGGCC
CAGCTCAGGCTCCCGGCACTCCCGCACACCCTGGGGGAAGTCTGTCACCAAGCTGCACAG
GGCTCCAAGCACGTGCTCATGGAAGGGGCTGTGTTCTGTCCGGACGAGGGCCACCAGCTG
CTGGACCATGCCCATGGAGCACAGGGTCCCTTTGTGTTCAGGGTGGCCCACCAGCAGGTT
CTGCAGCAGGAACGCCGACTTGACCTTGAGCTTTTGCACTTGCTGCTGCATGGCCCGCAT
CAAGACAGAGAAGCCGTCCAGACGGAGGAACTGCAGCAGCCCGGCCTCCTGCTCCCGGAC
CAGGCAGGAGATGGCGAAGAGGGCCTTGACGCGCACCGAGTCGCAGGGGTCCCGATCCAG
CAGGCGCAGCAGCTTGCGCAGGGCACCGAGGCCCAGCACCTGCTCCTGGATGGCCGCCAC
GTTCTGGCTGCATGTGCCGATGAGTTGTGCCGCCCGCCACCGCAGCCCCGCGGGGCCCGC
CTCCAGGTAGCGGCCTACCAGCAGGTGCATGCCAGATAGCTGGCAGAAGTCTGCAGCGTT
GTCCATGTTCTCACACAGGTCGGCCAGCAGCTCCAGGGCCCCCTCACGCTCCTGCTGGTC
AGCAGCCAGTTCAGCTTCACCAGCTGAGGAGGGTGTGGGCTGGGACAGCACCCGGAGGCA
GTTCTTCATCTGCTCCACCTCCTCTCGCTGGCCCCGGAAGGCGGCCGACATGGCCTCCTG
CAGCCACTGGCGCCTCTCCTCACTCATGGGTTCTGGAGGTGGGTCTGGCTCTTCAGAGCC
CGCCGTGATGGCCATCTGCAGCAGACCTTGGAGGTTTCGCGGGGGTGGGGGGTTGCCCGA
GCCCCCAGCAGAGGAGCCGCTGCCCCCTGACGAGCAACCCTGAGAGGCTGGGGGCAGCGC
CAGGGGAAGGCGGCTGCCCCCAGAGCCTTGGTCCGCCATGGGCTGTTTGCGAAGAAGGGA
CGAATGTGCTGGGGTAGGGGATGGTCACCGCTGAGGTAGCGCGGGCTTCCTGACCGGTCG
ACTCCTGGAGGTCTCCCCGGGCCTCGTGTCGCCGCCGCTACTAAAGACAGAGTCGCCCGC
ACCTGACTACAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q99P31_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q99P31_MOUSE

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               11-126, - strand, RNAz p=0.617302
               

               
               238-393, + strand, RNAz p=0.975492
               

               
               1276-1546, + strand, RNAz p=0.88748

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-126, - strand, RNAz p=0.617302
               

               
               238-393, + strand, RNAz p=0.975492
               

               
               1276-1546, + strand, RNAz p=0.88748

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_012267, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_012267, -

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               11-483, gnl|bosTau2|chr18 (52954922-52954448)
               

               
               11-483, gnl|Hg17|chr19 (60465408-60465865)
               

               
               11-483, gnl|Mm7|chr7 (4233192-4233631)
               


               
               845-1073, gnl|bosTau2|chr18 (52949813-52949585)
               

               
               845-1073, gnl|canFam2|chr1 (105470986-105470800)
               

               
               845-1073, gnl|danRer3|chr16 (5713471-5713657)
               

               
               845-1073, gnl|echTel1|scaffold_239237 (3294-3108)
               

               
               845-1073, gnl|fr1|chrUn (165516379-165516549)
               

               
               845-1073, gnl|hg17|chr19 (60477570-60477756)
               

               
               845-1073, gnl|Hg17|chr19 (60477577-60477805)
               

               
               845-1073, gnl|mm7|chr7 (4250557-4250743)
               

               
               845-1073, gnl|Mm7|chr7 (4250564-4250800)
               

               
               845-1073, gnl|monDom2|scaffold_393 (18428-18242)
               

               
               845-1073, gnl|oryCun1|scaffold_162754 (13931-14104)
               

               
               845-1073, gnl|panTro1|chr20 (57899938-57900124)
               

               
               845-1073, gnl|rheMac2|chr19 (61295852-61296038)
               

               
               845-1073, gnl|rn3|chr1 (67966652-67966466)
               

               
               845-1073, gnl|tetNig1|chrUn_random (40369662-40369493)
               

               
               845-1073, gnl|xenTro1|scaffold_832 (480024-479847)
               


               
               1276-1574, gnl|bosTau2|chr18 (52945630-52945332)
               

               
               1276-1574, gnl|Hg17|chr19 (60482579-60482884)
               

               
               1276-1574, gnl|Mm7|chr7 (4257132-4257428)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-483, gnl|bosTau2|chr18 (52954922-52954448)
               

               
               11-483, gnl|Hg17|chr19 (60465408-60465865)
               

               
               11-483, gnl|Mm7|chr7 (4233192-4233631)
               


               
               845-1073, gnl|bosTau2|chr18 (52949813-52949585)
               

               
               845-1073, gnl|canFam2|chr1 (105470986-105470800)
               

               
               845-1073, gnl|danRer3|chr16 (5713471-5713657)
               

               
               845-1073, gnl|echTel1|scaffold_239237 (3294-3108)
               

               
               845-1073, gnl|fr1|chrUn (165516379-165516549)
               

               
               845-1073, gnl|hg17|chr19 (60477570-60477756)
               

               
               845-1073, gnl|Hg17|chr19 (60477577-60477805)
               

               
               845-1073, gnl|mm7|chr7 (4250557-4250743)
               

               
               845-1073, gnl|Mm7|chr7 (4250564-4250800)
               

               
               845-1073, gnl|monDom2|scaffold_393 (18428-18242)
               

               
               845-1073, gnl|oryCun1|scaffold_162754 (13931-14104)
               

               
               845-1073, gnl|panTro1|chr20 (57899938-57900124)
               

               
               845-1073, gnl|rheMac2|chr19 (61295852-61296038)
               

               
               845-1073, gnl|rn3|chr1 (67966652-67966466)
               

               
               845-1073, gnl|tetNig1|chrUn_random (40369662-40369493)
               

               
               845-1073, gnl|xenTro1|scaffold_832 (480024-479847)
               


               
               1276-1574, gnl|bosTau2|chr18 (52945630-52945332)
               

               
               1276-1574, gnl|Hg17|chr19 (60482579-60482884)
               

               
               1276-1574, gnl|Mm7|chr7 (4257132-4257428)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	11-126, - strand, RNAz p=0.617302
	238-393, + strand, RNAz p=0.975492
	1276-1546, + strand, RNAz p=0.88748

	11-483, gnl\|bosTau2\|chr18 (52954922-52954448)
	11-483, gnl\|Hg17\|chr19 (60465408-60465865)
	11-483, gnl\|Mm7\|chr7 (4233192-4233631)

	845-1073, gnl\|bosTau2\|chr18 (52949813-52949585)
	845-1073, gnl\|canFam2\|chr1 (105470986-105470800)
	845-1073, gnl\|danRer3\|chr16 (5713471-5713657)
	845-1073, gnl\|echTel1\|scaffold_239237 (3294-3108)
	845-1073, gnl\|fr1\|chrUn (165516379-165516549)
	845-1073, gnl\|hg17\|chr19 (60477570-60477756)
	845-1073, gnl\|Hg17\|chr19 (60477577-60477805)
	845-1073, gnl\|mm7\|chr7 (4250557-4250743)
	845-1073, gnl\|Mm7\|chr7 (4250564-4250800)
	845-1073, gnl\|monDom2\|scaffold_393 (18428-18242)
	845-1073, gnl\|oryCun1\|scaffold_162754 (13931-14104)
	845-1073, gnl\|panTro1\|chr20 (57899938-57900124)
	845-1073, gnl\|rheMac2\|chr19 (61295852-61296038)
	845-1073, gnl\|rn3\|chr1 (67966652-67966466)
	845-1073, gnl\|tetNig1\|chrUn_random (40369662-40369493)
	845-1073, gnl\|xenTro1\|scaffold_832 (480024-479847)

	1276-1574, gnl\|bosTau2\|chr18 (52945630-52945332)
	1276-1574, gnl\|Hg17\|chr19 (60482579-60482884)
	1276-1574, gnl\|Mm7\|chr7 (4257132-4257428)

	elu (0.385356)
	fce (0.271592)
	ebs (0.236602)
	cje (0.165235)
	cag (0.151194)
	nmm (0.132802)
	cov (0.132153)
	ese (0.126502)