Ss1.1-Liv1-LVR010100G03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTTCACGCCCGGCGGCTTGCTGTCTCCGAGGCGGGAGGAGCCCGAGGGGGCACGGTC CCCGCATGTAGAAGCCACTGTTAAACGAGTCAAGCTTCTTCACGCCCGGCGGCTTGCTGT CTCCGAGGCGGGAGGAGCCCGAGGGGGCACGGTCCCCGCATGGATTTTGTATTAGGAGAC ATGGATCTTGCTGCTAATGAGCTCAGCATTTATGACAAACTTTCGGAGACTGTGGATTTA GTGAGACAGACAGGCCATCAGTGTGGCATGTCAGAGAAGGCAATTGAAAAATTTATCAGA CAGCTGCTGGAAAAGAATGAACCTCAGAGGGGGCCACCACAGTATCCCGTCCTTCTAGCC GTGTACAAGGTCCTCATAACCCTGGGATTAATCTTGCTCACTGCCTACTTTGTGATTCAA CCTTTCAGCTCATTACCACCTGAACCAGTGCTTTCTGGAGCTCACACCTGGCGTTCACTC ATCCATCACATCCGGCTGATGTCTTTGCCCATTACCAAGAAGTACATGCCAGAAAATAAA GGAGTTCCTTTGCATGGGGGTGATGAAGACAGACCCTTTCCAGACTTTGACCCCTGGTGG ACAAATGACTGTGAGCAGAATGAGTCAGACCCCATCCCTGCCAACTGCACCGGCTGCACC CAGAAGTTGCCCCTAAAAGTAATGCTCCTGGAAGACACCCCAGTGAAGTTTGAGAGACTC CATCCTCTGGTGATCAAGACCGGACAGCCCCTGTCATCTGAGGAGCTTCAGCAGTTTTTG TGCCAGTACCCTGAGGTGACAGAAGGCTTCACCGAAGAGTTTTTCGCCAAGTGGTGGCGC TGCTTTCCTCACCGGTGGTTCCCATTTCCTTATCCCTGGAGAAGACCTCTGAACAGATCA CACATTTTACGTGAGCTTTTTCCTGTCTTCACCTTCCTGCCGTTTCCAAAAGACGCCTCC TTGAAAAAGTGCTTCCTTCTTCAACCGGAACCTATTGCGGGGAGTAAGATGCATAGGATG CATGACCTGTTTACCATCGGCAGCGGCGAGGCCATGTTGCAGCTCATTCCTCCCTTCCAG TGCCGAAGACACTGCCAATCTGTGGCGATGCCACTGGAGCCGGGGGATGTTGGCTATGCT GGTGCCACTCACTGGAAGGTCTACATTATAGCCAGAGGGGTCCAGCCTTTGGTCATCTGC GATGGAACCACCGTCTCAGAACCATAGGAAACAACTGCATGAAAGAACAGCTCTGAGAGC TGAAGACCAGATTGAAAGGGGGGAAATAAAAACAAACAAACAAAAACCCTGATGAAACCA CTTCCCAGGGGTTGGTCACTTAGTTACCTGCCCCATGCATGCATGTGTGAGCCAGCTGTG CGCTGGAGGCAAAGGCCAGAGCTTGGTCCTCCCAGCTCTTCTAGCCCAGCTGCTTGGCCC GGACTTTGCCAATATCCATCTGTGAGAGACTGGCCTCTTCCAGGCCTTTTGGTACCGAAG CCTTGAGGCTGCCCCTTAGGCAGGGAACAGGGTTGGTACCACCCCTCACTTGCATGCCGT GGTCTCCCCACTGGCTCCCTGGCCCTGCGAGGACAGTCTGCAGGCCCCAACTTCGGAGCC ATCCTCTGCCAGGTGGGTCTGCCCATCCTGTCTTCCTCATCACACTCCCCTGTGCTCTGT TTGGAAAGCCACGGATGATTAAAGAAGTCACTGCAGTTTCTCAAGCAGATTGGAATTAAG AACTAGTGAAAAGGGATCAAATAACCTCAGACTGCACTCAAGAAATGCAGTTCTTATGGG GTTCCCATTGTGGCTCAGTGGTAACGAACCTGACTAGTATCCATGAGGACACAGGTTCGA TCCCTAGCCTTGCTCAGTGGGTTAAGTATCCTGTGTTGCCATGAGCTGTGGTAGGTCACA GGCACAGCTCAGATCTGGCGTTGCTGTGGCTGTGGTGTAGGCAGGCAGTTGTAGCTCAGG CCGACAGCTGAAGCTCAGATTTGACCCCTAGCCTGGAAACTCCCATATGCCGTGGGTGCG GCCAAAAAAGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTTCACGCCCGGCGGCTTGCTGTCTCCGAGGCGGGAGGAGCCCGAGGGGGCACGGTC CCCGCATGTAGAAGCCACTGTTAAACGAGTCAAGCTTCTTCACGCCCGGCGGCTTGCTGT CTCCGAGGCGGGAGGAGCCCGAGGGGGCACGGTCCCCGCATGGATTTTGTATTAGGAGAC ATGGATCTTGCTGCTAATGAGCTCAGCATTTATGACAAACTTTCGGAGACTGTGGATTTA GTGAGACAGACAGGCCATCAGTGTGGCATGTCAGAGAAGGCAATTGAAAAATTTATCAGA CAGCTGCTGGAAAAGAATGAACCTCAGAGGGGGCCACCACAGTATCCCGTCCTTCTAGCC GTGTACAAGGTCCTCATAACCCTGGGATTAATCTTGCTCACTGCCTACTTTGTGATTCAA CCTTTCAGCTCATTACCACCTGAACCAGTGCTTTCTGGAGCTCACACCTGGCGTTCACTC ATCCATCACATCCGGCTGATGTCTTTGCCCATTACCAAGAAGTACATGCCAGAAAATAAA GGAGTTCCTTTGCATGGGGGTGATGAAGACAGACCCTTTCCAGACTTTGACCCCTGGTGG ACAAATGACTGTGAGCAGAATGAGTCAGACCCCATCCCTGCCAACTGCACCGGCTGCACC CAGAAGTTGCCCCTAAAAGTAATGCTCCTGGAAGACACCCCAGTGAAGTTTGAGAGACTC CATCCTCTGGTGATCAAGACCGGACAGCCCCTGTCATCTGAGGAGCTTCAGCAGTTTTTG TGCCAGTACCCTGAGGTGACAGAAGGCTTCACCGAAGAGTTTTTCGCCAAGTGGTGGCGC TGCTTTCCTCACCGGTGGTTCCCATTTCCTTATCCCTGGAGAAGACCTCTGAACAGATCA CACATTTTACGTGAGCTTTTTCCTGTCTTCACCTTCCTGCCGTTTCCAAAAGACGCCTCC TTGAAAAAGTGCTTCCTTCTTCAACCGGAACCTATTGCGGGGAGTAAGATGCATAGGATG CATGACCTGTTTACCATCGGCAGCGGCGAGGCCATGTTGCAGCTCATTCCTCCCTTCCAG TGCCGAAGACACTGCCAATCTGTGGCGATGCCACTGGAGCCGGGGGATGTTGGCTATGCT GGTGCCACTCACTGGAAGGTCTACATTATAGCCAGAGGGGTCCAGCCTTTGGTCATCTGC GATGGAACCACCGTCTCAGAACCATAGGAAACAACTGCATGAAAGAACAGCTCTGAGAGC TGAAGACCAGATTGAAAGGGGGGAAATAAAAACAAACAAACAAAAACCCTGATGAAACCA CTTCCCAGGGGTTGGTCACTTAGTTACCTGCCCCATGCATGCATGTGTGAGCCAGCTGTG CGCTGGAGGCAAAGGCCAGAGCTTGGTCCTCCCAGCTCTTCTAGCCCAGCTGCTTGGCCC GGACTTTGCCAATATCCATCTGTGAGAGACTGGCCTCTTCCAGGCCTTTTGGTACCGAAG CCTTGAGGCTGCCCCTTAGGCAGGGAACAGGGTTGGTACCACCCCTCACTTGCATGCCGT GGTCTCCCCACTGGCTCCCTGGCCCTGCGAGGACAGTCTGCAGGCCCCAACTTCGGAGCC ATCCTCTGCCAGGTGGGTCTGCCCATCCTGTCTTCCTCATCACACTCCCCTGTGCTCTGT TTGGAAAGCCACGGATGATTAAAGAAGTCACTGCAGTTTCTCAAGCAGATTGGAATTAAG AACTAGTGAAAAGGGATCAAATAACCTCAGACTGCACTCAAGAAATGCAGTTCTTATGGG GTTCCCATTGTGGCTCAGTGGTAACGAACCTGACTAGTATCCATGAGGACACAGGTTCGA TCCCTAGCCTTGCTCAGTGGGTTAAGTATCCTGTGTTGCCATGAGCTGTGGTAGGTCACA GGCACAGCTCAGATCTGGCGTTGCTGTGGCTGTGGTGTAGGCAGGCAGTTGTAGCTCAGG CCGACAGCTGAAGCTCAGATTTGACCCCTAGCCTGGAAACTCCCATATGCCGTGGGTGCG GCCAAAAAAGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1369-1541, - strand, RNAz p=0.84095 | |
| 1371-1470, + strand, RNAz p=0.788211 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1369-1541, - strand, RNAz p=0.84095 | |
| 1371-1470, + strand, RNAz p=0.788211 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_152734, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 368-583, gnl|bosTau2|chr23 (10081680-10081895) | |
| 368-583, gnl|Hg17|chr6 (36977973-36978188) | |
| 368-583, gnl|Mm7|chr17 (27474767-27474982) | |
| 735-882, gnl|bosTau2|chr23 (10113685-10113832) | |
| 735-882, gnl|canFam2|chr12 (8971345-8971533) | |
| 735-882, gnl|galGal2|chr26 (285803-285975) | |
| 735-882, gnl|hg17|chr6 (36990282-36990471) | |
| 735-882, gnl|Hg17|chr6 (36990304-36990451) | |
| 735-882, gnl|loxAfr1|scaffold_152146 (455-642) | |
| 735-882, gnl|mm7|chr17 (27486340-27486517) | |
| 735-882, gnl|Mm7|chr17 (27486362-27486509) | |
| 735-882, gnl|monDom2|scaffold_42 (9445768-9445588) | |
| 735-882, gnl|panTro1|chr5 (37465514-37465703) | |
| 735-882, gnl|rheMac2|chr4 (36669837-36670031) | |
| 735-882, gnl|rn3|chr20 (7602390-7602565) | |
| 1132-1795, gnl|bosTau2|chr23 (10121511-10122163) | |
| 1132-1795, gnl|canFam2|chr12 (8978977-8979487) | |
| 1132-1795, gnl|echTel1|scaffold_300871 (5551-5125) | |
| 1132-1795, gnl|hg17|chr6 (36999054-36999577) | |
| 1132-1795, gnl|Hg17|chr6 (36999100-36999764) | |
| 1132-1795, gnl|loxAfr1|scaffold_23888 (25817-26337) | |
| 1132-1795, gnl|mm7|chr17 (27493401-27493865) | |
| 1132-1795, gnl|Mm7|chr17 (27493446-27494108) | |
| 1132-1795, gnl|monDom2|scaffold_42 (9438803-9438168) | |
| 1132-1795, gnl|oryCun1|scaffold_106959 (7181-7640) | |
| 1132-1795, gnl|panTro1|chr5 (37474606-37475129) | |
| 1132-1795, gnl|rheMac2|chr4 (36677544-36678062) | |
| 1132-1795, gnl|rn3|chr20 (7610194-7610663) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 368-583, gnl|bosTau2|chr23 (10081680-10081895) | |
| 368-583, gnl|Hg17|chr6 (36977973-36978188) | |
| 368-583, gnl|Mm7|chr17 (27474767-27474982) | |
| 735-882, gnl|bosTau2|chr23 (10113685-10113832) | |
| 735-882, gnl|canFam2|chr12 (8971345-8971533) | |
| 735-882, gnl|galGal2|chr26 (285803-285975) | |
| 735-882, gnl|hg17|chr6 (36990282-36990471) | |
| 735-882, gnl|Hg17|chr6 (36990304-36990451) | |
| 735-882, gnl|loxAfr1|scaffold_152146 (455-642) | |
| 735-882, gnl|mm7|chr17 (27486340-27486517) | |
| 735-882, gnl|Mm7|chr17 (27486362-27486509) | |
| 735-882, gnl|monDom2|scaffold_42 (9445768-9445588) | |
| 735-882, gnl|panTro1|chr5 (37465514-37465703) | |
| 735-882, gnl|rheMac2|chr4 (36669837-36670031) | |
| 735-882, gnl|rn3|chr20 (7602390-7602565) | |
| 1132-1795, gnl|bosTau2|chr23 (10121511-10122163) | |
| 1132-1795, gnl|canFam2|chr12 (8978977-8979487) | |
| 1132-1795, gnl|echTel1|scaffold_300871 (5551-5125) | |
| 1132-1795, gnl|hg17|chr6 (36999054-36999577) | |
| 1132-1795, gnl|Hg17|chr6 (36999100-36999764) | |
| 1132-1795, gnl|loxAfr1|scaffold_23888 (25817-26337) | |
| 1132-1795, gnl|mm7|chr17 (27493401-27493865) | |
| 1132-1795, gnl|Mm7|chr17 (27493446-27494108) | |
| 1132-1795, gnl|monDom2|scaffold_42 (9438803-9438168) | |
| 1132-1795, gnl|oryCun1|scaffold_106959 (7181-7640) | |
| 1132-1795, gnl|panTro1|chr5 (37474606-37475129) | |
| 1132-1795, gnl|rheMac2|chr4 (36677544-36678062) | |
| 1132-1795, gnl|rn3|chr20 (7610194-7610663) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| ssp (0.271039) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.271039) | |
| ece (0.229305) | |
| eje (0.197668) | |
| col (0.195008) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| jej (0.0989218) |