Non-Coding RNA Search

Ss1.1-Liv1-LVR010101E10.5

Sequence:


               
               CCTCTGGAACCTCAGTCAGATTTAGATGAAAGAACCAGTTCAGAGGGATTGCCTCAGACC
ACACTATCTCCACTCGCCCAGACCTGTGGAAGATTAGCGACCATGTTTTCCAGTGGGATA
GGAACTGTAGCTGCTAGAAAAAGGAGGGAGTGTCTTCTCTCCTTGCTGATTATTGGCCTC
TGGGGCTGTGTGACCTGTCATTGGAGCCCTGTGGAGGACATCTGCACAGCCAAGCCTCGG
GACATTCCCGTGAATCCCATGTGCATTTACCGTTCCCCAGAGAAGAAGGCCACTGAGGGC
GAGGGCTCAGAGCAGAAGATCCCTGAGGCCACCAACCGGCGGGTCTGGGAACTGTCCAAG
GCCAATTCCCACTTTGCCACCATCTTCTATCAGCACTTGGCAGACTCCAAGAATGACAAT
GACAACATTTTCCTGTCACCCCTGAGTATCTCCACAGCTTTTGCTATGACCAAGCTGGGT
GCCTGTGACAACACCCTCAAGCAGCTGATGGAGGTGTTTAAGTTTGATACCATCTCTGAG
AAAACATCTGATCAGGTCCACTTTTTCTTTGCCAAACTGAACTGCCGACTCTATCGAAAA
GCCAACAAATCCTCTGAGTTGGTGTCAGCCAACCGCCTTTTTGGAGACAAATCCCTTACC
TTCAATGAGACCTACCAGGAAATCAGTGAGGTGGTATATGGAGCCAAGCTCCAGCCCCTG
GACTTCAAGGAAAATGCAGAGCAGTCCAGAGGGATCATCAACCAATGGGTGTCCAACAAG
ACTGAAGGGCGTATCACTGATGTCATTCCCCCAGAAGCCATCAACGAGCTCACTGTGCTG
GTGCTGGTCAACACCATTTACTTTAAGGGCCGGTGGAAGTCAAAGTTCAGCTCTGAGAAC
ACAAGGAAGGAACTTTTCTACAAGGCTAATGGGGAGTCGTGTTCAGTATCCATGATGTAT
CAGGAAAGCAAGTTTCGTTACCGGCGTGTAGCAGAAGGCACCCAGGTGCTCGAGTTGCCC
TTCAAGGGTGATGACATCACCATGGTGCTCATCCTGCCCAAGCTCGAGAAGAGCCTGGCC
AAGGTGGAGCAGGAACTCACCCCGGAGGTGCTGCAGGAGTGGCTAGACGAGCTGGCAGAC
ACCCTGCTGGTGGTCCACATGCCCCGCTTCCGCATAGAGGACAGCTTCAGCGTGAAGGAG
CGGCTGCAAGACATGGGCCTTGAGGACCTGTTCATCCCTGAGAAGGCCAAGCTTCCAGGT
ATTGTTGCAGAAGGCCGGGATGACCTCTATGTCTCAGATGCATTTCATAAGGCATTTCTT
GAGGTAAATGAGGAAGGCAGTGAAGCAGCAGCAAGTACCACCATTGGGATCGCTGGCCGT
TCGCTGAATCCCGCCAGAGTGACATTCAAGGCCAATAGGCCCTTCCTGGTTCTTATAAGG
GAAGTTGCTCTGAATACTATTATCTTCATGGGCAGAGTAGCCAACCCTTGTTAAAGTGTT
ATTCTTTATACTTCTTCCTATTTTGGTTTGTGAATAGAAGTAAAAATAAATACAACTACT
CCCATATCTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGGAACCTCAGTCAGATTTAGATGAAAGAACCAGTTCAGAGGGATTGCCTCAGACC
ACACTATCTCCACTCGCCCAGACCTGTGGAAGATTAGCGACCATGTTTTCCAGTGGGATA
GGAACTGTAGCTGCTAGAAAAAGGAGGGAGTGTCTTCTCTCCTTGCTGATTATTGGCCTC
TGGGGCTGTGTGACCTGTCATTGGAGCCCTGTGGAGGACATCTGCACAGCCAAGCCTCGG
GACATTCCCGTGAATCCCATGTGCATTTACCGTTCCCCAGAGAAGAAGGCCACTGAGGGC
GAGGGCTCAGAGCAGAAGATCCCTGAGGCCACCAACCGGCGGGTCTGGGAACTGTCCAAG
GCCAATTCCCACTTTGCCACCATCTTCTATCAGCACTTGGCAGACTCCAAGAATGACAAT
GACAACATTTTCCTGTCACCCCTGAGTATCTCCACAGCTTTTGCTATGACCAAGCTGGGT
GCCTGTGACAACACCCTCAAGCAGCTGATGGAGGTGTTTAAGTTTGATACCATCTCTGAG
AAAACATCTGATCAGGTCCACTTTTTCTTTGCCAAACTGAACTGCCGACTCTATCGAAAA
GCCAACAAATCCTCTGAGTTGGTGTCAGCCAACCGCCTTTTTGGAGACAAATCCCTTACC
TTCAATGAGACCTACCAGGAAATCAGTGAGGTGGTATATGGAGCCAAGCTCCAGCCCCTG
GACTTCAAGGAAAATGCAGAGCAGTCCAGAGGGATCATCAACCAATGGGTGTCCAACAAG
ACTGAAGGGCGTATCACTGATGTCATTCCCCCAGAAGCCATCAACGAGCTCACTGTGCTG
GTGCTGGTCAACACCATTTACTTTAAGGGCCGGTGGAAGTCAAAGTTCAGCTCTGAGAAC
ACAAGGAAGGAACTTTTCTACAAGGCTAATGGGGAGTCGTGTTCAGTATCCATGATGTAT
CAGGAAAGCAAGTTTCGTTACCGGCGTGTAGCAGAAGGCACCCAGGTGCTCGAGTTGCCC
TTCAAGGGTGATGACATCACCATGGTGCTCATCCTGCCCAAGCTCGAGAAGAGCCTGGCC
AAGGTGGAGCAGGAACTCACCCCGGAGGTGCTGCAGGAGTGGCTAGACGAGCTGGCAGAC
ACCCTGCTGGTGGTCCACATGCCCCGCTTCCGCATAGAGGACAGCTTCAGCGTGAAGGAG
CGGCTGCAAGACATGGGCCTTGAGGACCTGTTCATCCCTGAGAAGGCCAAGCTTCCAGGT
ATTGTTGCAGAAGGCCGGGATGACCTCTATGTCTCAGATGCATTTCATAAGGCATTTCTT
GAGGTAAATGAGGAAGGCAGTGAAGCAGCAGCAAGTACCACCATTGGGATCGCTGGCCGT
TCGCTGAATCCCGCCAGAGTGACATTCAAGGCCAATAGGCCCTTCCTGGTTCTTATAAGG
GAAGTTGCTCTGAATACTATTATCTTCATGGGCAGAGTAGCCAACCCTTGTTAAAGTGTT
ATTCTTTATACTTCTTCCTATTTTGGTTTGTGAATAGAAGTAAAAATAAATACAACTACT
CCCATATCTCAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|1082955|pir||JX0364

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|1082955|pir||JX0364

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               341-515, + strand, RNAz p=0.997677
               

               
               945-1144, + strand, RNAz p=0.976177

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-515, + strand, RNAz p=0.997677
               

               
               945-1144, + strand, RNAz p=0.976177

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               142-515, gnl|bosTau2|chr21 (47584962-47584589)
               

               
               142-515, gnl|Hg17|chr1 (170615716-170615346)
               

               
               142-515, gnl|Mm7|chr1 (160951460-160951833)
               


               
               866-1260, gnl|bosTau2|chr21 (47580690-47580296)
               

               
               866-1260, gnl|Hg17|chr1 (170610739-170610345)
               

               
               866-1260, gnl|Mm7|chr1 (160959430-160959824)
               


               
               1322-1572, gnl|bosTau2|chr21 (47576666-47576412)
               

               
               1322-1572, gnl|Hg17|chr1 (170604862-170604603)
               

               
               1322-1572, gnl|Mm7|chr1 (160964335-160964591)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-515, gnl|bosTau2|chr21 (47584962-47584589)
               

               
               142-515, gnl|Hg17|chr1 (170615716-170615346)
               

               
               142-515, gnl|Mm7|chr1 (160951460-160951833)
               


               
               866-1260, gnl|bosTau2|chr21 (47580690-47580296)
               

               
               866-1260, gnl|Hg17|chr1 (170610739-170610345)
               

               
               866-1260, gnl|Mm7|chr1 (160959430-160959824)
               


               
               1322-1572, gnl|bosTau2|chr21 (47576666-47576412)
               

               
               1322-1572, gnl|Hg17|chr1 (170604862-170604603)
               

               
               1322-1572, gnl|Mm7|chr1 (160964335-160964591)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cli (4.88998)
               

               
               lun (2.55831)
               

               
               fli (2.02881)
               

               
               eli (1.36633)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (4.88998)
               

               
               lun (2.55831)
               

               
               fli (2.02881)
               

               
               eli (1.36633)
               

               
               spl (0.143184)
               

               
               ese (0.126502)

	341-515, + strand, RNAz p=0.997677
	945-1144, + strand, RNAz p=0.976177

	142-515, gnl\|bosTau2\|chr21 (47584962-47584589)
	142-515, gnl\|Hg17\|chr1 (170615716-170615346)
	142-515, gnl\|Mm7\|chr1 (160951460-160951833)

	866-1260, gnl\|bosTau2\|chr21 (47580690-47580296)
	866-1260, gnl\|Hg17\|chr1 (170610739-170610345)
	866-1260, gnl\|Mm7\|chr1 (160959430-160959824)

	1322-1572, gnl\|bosTau2\|chr21 (47576666-47576412)
	1322-1572, gnl\|Hg17\|chr1 (170604862-170604603)
	1322-1572, gnl\|Mm7\|chr1 (160964335-160964591)

	cli (4.88998)
	lun (2.55831)
	fli (2.02881)
	eli (1.36633)
	spl (0.143184)
	ese (0.126502)