Non-Coding RNA Search

Ss1.1-Liv1-LVR010102A01.5

Sequence:


               
               GGTCTGTAACAGAAAACGCCAGCGCTCAGCTCCAACCAGTGCAGAACCACCCAGCCCAGA
ACTCCCAGGACGGGCCACTCTTAGGCTCCTTCCCTCCACCATGGAGTACCTCTCTGCCCT
GAACCCCAGCGGCCTGCTCAGGTCAGTATCCAACATGAGCTCCGACTTAGGCCGTAAGGT
CTGGACCTCCACTCCACCACCCCAGCGACCTTTCCGTATCTGTGATCACAAGCGGACCAC
CCGGAAAGGCCTGACAGCCGCCACCCGCCAGGAACTGCTAGACAAGGCGCTGGGGACTCT
GATGCTGAATGGAGTGTTAACACTGGTGCTTGAGGAGGACGGGACCATGGTGGAGAGCGA
GGACTTCTTCCAGCTGTTGGAGGATGACACATGCCTGATGGTGCTGGAGTTGGGACAGAA
ATGGAGGCCCAGGAAGAGTGGGGTGCTGTCATATGGCCTGGGCCGGGAGAAGCCCAAGCA
CAGCCAGGACATCGCCTGCATCACCTTTGACGTATACAAGCAAAACCCCCGAGACCTCTT
TGGCAGCCTGAACATCAAAGCCACATTCTACGGGCTCTACTCCATGAGTTGTGACATCCA
AGGACTCGGCCCAAAGAAAATACTCAGGGAGCTCCTCCGATGGGCCTCCGCACTGCTGCA
AGGCCTGGGCCACGTCTTGCTGGGAATTTCCTCCACCATTCGTCATGCAGTGGAAGGGGC
TGAGCAGTGGCAGCAAAAGGGTCACCTTCACCCCTACTGAGCAGGAGCTCTGACCTTCTG
CCTCTAGACTCATTCCAAGAGACAGATTGTGACAACACCAAGTTTGGGGGCCTTCAGACA
GTGCAGGCTCAGTAACTCACCTGATTTCCCCACTGTCCCTCAATCCTATGGGACAGGCCC
CATCAGCATAATGTCCTATACCCCCACCTTATGCCTCCTGGCCACCTTTCCAGTCTCCTG
CTCCCTGAAAGACCACAGCCTGTCCCCGGACACCTGGATCCCACCCTGACTGCTGCTATA
CCTAGAGGTCCTTATGACTCCTCCTGTCCCTAAGCTCCTCTACCTTGAGATCGCTATTTC
TCTGTATCCTTCCTCCCCAAAATAACAAAGGTGCTTTCAATAAAAATATAAAAGTGTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTGTAACAGAAAACGCCAGCGCTCAGCTCCAACCAGTGCAGAACCACCCAGCCCAGA
ACTCCCAGGACGGGCCACTCTTAGGCTCCTTCCCTCCACCATGGAGTACCTCTCTGCCCT
GAACCCCAGCGGCCTGCTCAGGTCAGTATCCAACATGAGCTCCGACTTAGGCCGTAAGGT
CTGGACCTCCACTCCACCACCCCAGCGACCTTTCCGTATCTGTGATCACAAGCGGACCAC
CCGGAAAGGCCTGACAGCCGCCACCCGCCAGGAACTGCTAGACAAGGCGCTGGGGACTCT
GATGCTGAATGGAGTGTTAACACTGGTGCTTGAGGAGGACGGGACCATGGTGGAGAGCGA
GGACTTCTTCCAGCTGTTGGAGGATGACACATGCCTGATGGTGCTGGAGTTGGGACAGAA
ATGGAGGCCCAGGAAGAGTGGGGTGCTGTCATATGGCCTGGGCCGGGAGAAGCCCAAGCA
CAGCCAGGACATCGCCTGCATCACCTTTGACGTATACAAGCAAAACCCCCGAGACCTCTT
TGGCAGCCTGAACATCAAAGCCACATTCTACGGGCTCTACTCCATGAGTTGTGACATCCA
AGGACTCGGCCCAAAGAAAATACTCAGGGAGCTCCTCCGATGGGCCTCCGCACTGCTGCA
AGGCCTGGGCCACGTCTTGCTGGGAATTTCCTCCACCATTCGTCATGCAGTGGAAGGGGC
TGAGCAGTGGCAGCAAAAGGGTCACCTTCACCCCTACTGAGCAGGAGCTCTGACCTTCTG
CCTCTAGACTCATTCCAAGAGACAGATTGTGACAACACCAAGTTTGGGGGCCTTCAGACA
GTGCAGGCTCAGTAACTCACCTGATTTCCCCACTGTCCCTCAATCCTATGGGACAGGCCC
CATCAGCATAATGTCCTATACCCCCACCTTATGCCTCCTGGCCACCTTTCCAGTCTCCTG
CTCCCTGAAAGACCACAGCCTGTCCCCGGACACCTGGATCCCACCCTGACTGCTGCTATA
CCTAGAGGTCCTTATGACTCCTCCTGTCCCTAAGCTCCTCTACCTTGAGATCGCTATTTC
TCTGTATCCTTCCTCCCCAAAATAACAAAGGTGCTTTCAATAAAAATATAAAAGTGTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|23271172|gb|AAH35970.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|23271172|gb|AAH35970.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               139-257, + strand, RNAz p=0.570085
               

               
               511-628, - strand, RNAz p=0.580464

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               139-257, + strand, RNAz p=0.570085
               

               
               511-628, - strand, RNAz p=0.580464

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               139-288, gnl|bosTau2|chr10 (12193841-12193990)
               

               
               139-288, gnl|Hg17|chr14 (23846564-23846415)
               

               
               139-288, gnl|Mm7|chr14 (50625342-50625193)
               


               
               435-628, gnl|bosTau2|chr10 (12195241-12195434)
               

               
               435-628, gnl|canFam2|chr8 (7282180-7282375)
               

               
               435-628, gnl|danRer3|chr7 (11703818-11703647)
               

               
               435-628, gnl|dasNov1|scaffold_21827 (2288-2094)
               

               
               435-628, gnl|echTel1|scaffold_325473 (50786-50898)
               

               
               435-628, gnl|fr1|chrUn (223144755-223144562)
               

               
               435-628, gnl|hg17|chr14 (23844982-23845177)
               

               
               435-628, gnl|Hg17|chr14 (23845185-23844992)
               

               
               435-628, gnl|loxAfr1|scaffold_138424 (1256-1371)
               

               
               435-628, gnl|mm7|chr14 (50622053-50622248)
               

               
               435-628, gnl|Mm7|chr14 (50622256-50622063)
               

               
               435-628, gnl|monDom2|scaffold_12 (25403027-25402832)
               

               
               435-628, gnl|oryCun1|scaffold_178102 (190672-190867)
               

               
               435-628, gnl|panTro1|chr15 (22749245-22749440)
               

               
               435-628, gnl|rheMac2|chr7 (87201656-87201851)
               

               
               435-628, gnl|rn3|chr15 (33932953-33933148)
               

               
               435-628, gnl|tetNig1|chrUn_random (21408122-21407934)
               

               
               435-628, gnl|xenTro1|scaffold_1129 (44678-44863)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-288, gnl|bosTau2|chr10 (12193841-12193990)
               

               
               139-288, gnl|Hg17|chr14 (23846564-23846415)
               

               
               139-288, gnl|Mm7|chr14 (50625342-50625193)
               


               
               435-628, gnl|bosTau2|chr10 (12195241-12195434)
               

               
               435-628, gnl|canFam2|chr8 (7282180-7282375)
               

               
               435-628, gnl|danRer3|chr7 (11703818-11703647)
               

               
               435-628, gnl|dasNov1|scaffold_21827 (2288-2094)
               

               
               435-628, gnl|echTel1|scaffold_325473 (50786-50898)
               

               
               435-628, gnl|fr1|chrUn (223144755-223144562)
               

               
               435-628, gnl|hg17|chr14 (23844982-23845177)
               

               
               435-628, gnl|Hg17|chr14 (23845185-23844992)
               

               
               435-628, gnl|loxAfr1|scaffold_138424 (1256-1371)
               

               
               435-628, gnl|mm7|chr14 (50622053-50622248)
               

               
               435-628, gnl|Mm7|chr14 (50622256-50622063)
               

               
               435-628, gnl|monDom2|scaffold_12 (25403027-25402832)
               

               
               435-628, gnl|oryCun1|scaffold_178102 (190672-190867)
               

               
               435-628, gnl|panTro1|chr15 (22749245-22749440)
               

               
               435-628, gnl|rheMac2|chr7 (87201656-87201851)
               

               
               435-628, gnl|rn3|chr15 (33932953-33933148)
               

               
               435-628, gnl|tetNig1|chrUn_random (21408122-21407934)
               

               
               435-628, gnl|xenTro1|scaffold_1129 (44678-44863)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               jej (0.692452)
               

               
               nje (0.49776)
               

               
               cli (0.458435)
               

               
               duo (0.172801)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.692452)
               

               
               nje (0.49776)
               

               
               cli (0.458435)
               

               
               duo (0.172801)
               

               
               med (0.116252)

	139-257, + strand, RNAz p=0.570085
	511-628, - strand, RNAz p=0.580464

	139-288, gnl\|bosTau2\|chr10 (12193841-12193990)
	139-288, gnl\|Hg17\|chr14 (23846564-23846415)
	139-288, gnl\|Mm7\|chr14 (50625342-50625193)

	435-628, gnl\|bosTau2\|chr10 (12195241-12195434)
	435-628, gnl\|canFam2\|chr8 (7282180-7282375)
	435-628, gnl\|danRer3\|chr7 (11703818-11703647)
	435-628, gnl\|dasNov1\|scaffold_21827 (2288-2094)
	435-628, gnl\|echTel1\|scaffold_325473 (50786-50898)
	435-628, gnl\|fr1\|chrUn (223144755-223144562)
	435-628, gnl\|hg17\|chr14 (23844982-23845177)
	435-628, gnl\|Hg17\|chr14 (23845185-23844992)
	435-628, gnl\|loxAfr1\|scaffold_138424 (1256-1371)
	435-628, gnl\|mm7\|chr14 (50622053-50622248)
	435-628, gnl\|Mm7\|chr14 (50622256-50622063)
	435-628, gnl\|monDom2\|scaffold_12 (25403027-25402832)
	435-628, gnl\|oryCun1\|scaffold_178102 (190672-190867)
	435-628, gnl\|panTro1\|chr15 (22749245-22749440)
	435-628, gnl\|rheMac2\|chr7 (87201656-87201851)
	435-628, gnl\|rn3\|chr15 (33932953-33933148)
	435-628, gnl\|tetNig1\|chrUn_random (21408122-21407934)
	435-628, gnl\|xenTro1\|scaffold_1129 (44678-44863)

	jej (0.692452)
	nje (0.49776)
	cli (0.458435)
	duo (0.172801)
	med (0.116252)