Non-Coding RNA Search

Ss1.1-Liv1-LVR010102C03.5

Sequence:


               
               AGCCTAGAGAGACCTGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCGGCGAGGAAACC
GTGAAGGGATGGGTAAGAATCACGGCTCTCTCGGACCCTGCCAGCTAGCCTAGAGAGACC
TGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCTGCTGGGTTTTTCCTCTTTCTTTGTT
CTCCTTTCTACATATCCATACACAGCCCACAGCTGTCAGCCGACAAAGACATGACCACCA
ACGCCAGCCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTGTGCCTA
ATGACTGCCCCACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGTCG
TCACTACCTGGCTGTTGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGAC
TGTCCTTGTGCTGGTTTGCAGTCTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCT
GTCTCTACCACGAGGAGCTTCTTGGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAAT
ATGCCAAGGGAGACAGCCGATACATCCTGAATGATAACTTCACCATCTGCATGGAGACCA
TCACCGCCTGCCTCTGGGGACCACTCAGCCTATGGGTGGTGATCGCCTTTCTCCGCCAGC
AGCCCCACCGCTTTGTCCTCCAGCTGGTGGTCTCTGTGGGTCAGATATACGGGGATGTGC
TCTATTTCCTGACAGAGCACCGTGACGGATTCCAGCACGGGGAGCTGGGCCACCCAATCT
ACTTCTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCTGGTGCTGCCCGGAATCCTTG
TGCTTGATTCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTGGACTCCAAAGCCTCCA
GAGCCAAGAGCAAGCAAAACTAATGAGTGATGAACTGGGCTTGAACACTGGCCGTTGAGG
AACTCGCCACCTGTGTCCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCGAATTGATC
TGTCAAACTCGGGCTGATGGGTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAGCTAG
GTACAGCTGCTGTTCAAGCTACAAGAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTG
AAATCAAATAAAAGTTCTTGACCCTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTAGAGAGACCTGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCGGCGAGGAAACC
GTGAAGGGATGGGTAAGAATCACGGCTCTCTCGGACCCTGCCAGCTAGCCTAGAGAGACC
TGGGAGGCTGTGGGAGAAGCCGCCGCAACCGCGCTGCTGGGTTTTTCCTCTTTCTTTGTT
CTCCTTTCTACATATCCATACACAGCCCACAGCTGTCAGCCGACAAAGACATGACCACCA
ACGCCAGCCCCATGCATCCATACTGGCCTCGGCACCTGAGGCTGGACAACTTTGTGCCTA
ATGACTGCCCCACTTGGCATATCCTGGCTGGCCTCTTCTCCGCCTCTGGAGTCTTAGTCG
TCACTACCTGGCTGTTGTCAGGTCGTGCTGCGGTCGTCCCACTGAGCACTTGGCGGAGAC
TGTCCTTGTGCTGGTTTGCAGTCTGTGGGTTCGTTCACTTGGTGATTGAGGGCTGGTTCT
GTCTCTACCACGAGGAGCTTCTTGGAGACCAAGCCTTCTTATCTCAACTCTGGAAGGAAT
ATGCCAAGGGAGACAGCCGATACATCCTGAATGATAACTTCACCATCTGCATGGAGACCA
TCACCGCCTGCCTCTGGGGACCACTCAGCCTATGGGTGGTGATCGCCTTTCTCCGCCAGC
AGCCCCACCGCTTTGTCCTCCAGCTGGTGGTCTCTGTGGGTCAGATATACGGGGATGTGC
TCTATTTCCTGACAGAGCACCGTGACGGATTCCAGCACGGGGAGCTGGGCCACCCAATCT
ACTTCTGGTTTTACTTTGTCTTCATGAATGCTCTGTGGCTGGTGCTGCCCGGAATCCTTG
TGCTTGATTCGATAAAGCAACTCAGTCACGCCCAGAGGATGCTGGACTCCAAAGCCTCCA
GAGCCAAGAGCAAGCAAAACTAATGAGTGATGAACTGGGCTTGAACACTGGCCGTTGAGG
AACTCGCCACCTGTGTCCAGTCCTTGCTCCTACAGATTGGAAGGACCAATCGAATTGATC
TGTCAAACTCGGGCTGATGGGTGGGCACCAAAAAGACCAGAGATAGAAGAAAGGAGCTAG
GTACAGCTGCTGTTCAAGCTACAAGAGAACCTAGGAAGTCCAAGATGGGGACAGGTTTTG
AAATCAAATAAAAGTTCTTGACCCTAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28277024|gb|AAH46501.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28277024|gb|AAH46501.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-289, - strand, RNAz p=0.945028

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-289, - strand, RNAz p=0.945028

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               171-532, gnl|bosTau2|chrX (25759753-25760107)
               

               
               171-532, gnl|Hg17|chrX (48138361-48138715)
               

               
               171-532, gnl|Mm7|chrX (6623581-6623228)
               


               
               699-1166, gnl|bosTau2|chrX (25762298-25762776)
               

               
               699-1166, gnl|Hg17|chrX (48142875-48143358)
               

               
               699-1166, gnl|Mm7|chrX (6618984-6618481)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               171-532, gnl|bosTau2|chrX (25759753-25760107)
               

               
               171-532, gnl|Hg17|chrX (48138361-48138715)
               

               
               171-532, gnl|Mm7|chrX (6623581-6623228)
               


               
               699-1166, gnl|bosTau2|chrX (25762298-25762776)
               

               
               699-1166, gnl|Hg17|chrX (48142875-48143358)
               

               
               699-1166, gnl|Mm7|chrX (6618984-6618481)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               cli (0.91687)
               

               
               lun (0.451467)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.91687)
               

               
               lun (0.451467)
               

               
               cov (0.396458)
               

               
               col (0.390016)
               

               
               fbs (0.350693)
               

               
               cje (0.330469)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               fli (0.202881)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	171-532, gnl\|bosTau2\|chrX (25759753-25760107)
	171-532, gnl\|Hg17\|chrX (48138361-48138715)
	171-532, gnl\|Mm7\|chrX (6623581-6623228)

	699-1166, gnl\|bosTau2\|chrX (25762298-25762776)
	699-1166, gnl\|Hg17\|chrX (48142875-48143358)
	699-1166, gnl\|Mm7\|chrX (6618984-6618481)

	cli (0.91687)
	lun (0.451467)
	cov (0.396458)
	col (0.390016)
	fbs (0.350693)
	cje (0.330469)
	fce (0.271592)
	ute (0.265569)
	fli (0.202881)
	ill (0.175593)
	sin (0.174948)
	nje (0.16592)
	nco (0.161734)
	eli (0.151814)
	cag (0.151194)
	csk (0.140746)
	nmm (0.132802)
	med (0.116252)
	jej (0.0989218)