Non-Coding RNA Search

Ss1.1-Liv1-LVR010102H02.5.5

Sequence:


               
               GCCGTGGTCCCCGCGAACGTTCTTTTTCGCAACGGGTTTGCCGCCAGGACACAGGTGTCG
TGAAAGCCATCGCTAAAAGCTAAGCAAAAATGGGAAAGGAGAAGACTCACATCAACATCG
TCGTCATCGGACACGTCGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTACAAAT
GCGGTGGGATCGACAAAAGAACCATCGAAAAGTTCGAAAAAGAGGCTGCGGAGATGGGAA
AGGGCTCCTTCAAGTATGCCTGGGTCTTGGACAAACTAAAGGCTGAACGTGAGCGTGGTA
TTACCATTGACATCTCCCTGTGGAAATTCGAGACCAGCAAGTACTACGTGACCATCATTG
ATGCTCCAGGACACAGAGACTTTATTAAGAACATGATTACAGGCACTTCCCAGGCTGACT
GTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTCGAAGCAGGTATTTCCAAGAACG
GGCAGACCCGTGAGCATGCTCTTCTGGCCTACACCCTGGGTGTGAAACAGCTCATTGTTG
GCGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAAGAGATTG
TAAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGATACAGTAGCATTTG
TGCCAATTTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGT
TCAAGGGATGGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACCACACTGCTTGAAG
CTCTGGATTGCATTCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCCCTCC
AGGACGTCTACAAAATTGGTGGTATTGGTACAGTCCCTGTGGGCCGAGTGGAGACCGGTG
TTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTCAAGT
CTGTTGAAATGCACCATGAAGCTTTGAGTGAAGCCCTTCCTGGGGACAACGTGGGCTTTA
ATGTCAAAAACGTGTCTGTCAAAGACGTTCGTCGTGGCAATGTGGCTGGTGACAGCAAAA
ATGACCCACCTATGGAAGCAGCTGGCTTTACAGCTCAGGTGATTATCCTGAACCATCCTG
GCCAGATCAGTGCTGGTTACGCACCTGTGCTGGATTGCCACACAGCTCACATTGCCTGCA
AGTTTGCTGAACTGAAGGAGAAGATTGATCGTCGTTCTGGGAAAAAGCTGGAAGATGGCC
CCAAGTTCTTGAAATCTGGTGATGCTGCCATTGTCGATATGGTTCCTGGCAAGCCCATGT
GTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGATTTGCTGTTCGTGACATGAGAC
AGACAGTTGCTGTGGGTGTCATCAAAGCTGTGGACAAGAAGGCAGCTGGAGCTGGCAAGG
TCACCAAGTCTGCTCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCCAATACCTGCCA
CCCCAGTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGTCTCAATTGGCCATT
TAAGTTTAATAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGA
AAGGAGAATGTTTTGTGGACCATTTGTTTTGTGTGTGGCAGTTTTTAAGTTATTAGTTTT
TAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATCTGTCACAGAATTTTGAGA
CCCATTAAAAAAAGTTTAATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGTGGTCCCCGCGAACGTTCTTTTTCGCAACGGGTTTGCCGCCAGGACACAGGTGTCG
TGAAAGCCATCGCTAAAAGCTAAGCAAAAATGGGAAAGGAGAAGACTCACATCAACATCG
TCGTCATCGGACACGTCGATTCGGGCAAGTCCACCACTACTGGCCATCTGATCTACAAAT
GCGGTGGGATCGACAAAAGAACCATCGAAAAGTTCGAAAAAGAGGCTGCGGAGATGGGAA
AGGGCTCCTTCAAGTATGCCTGGGTCTTGGACAAACTAAAGGCTGAACGTGAGCGTGGTA
TTACCATTGACATCTCCCTGTGGAAATTCGAGACCAGCAAGTACTACGTGACCATCATTG
ATGCTCCAGGACACAGAGACTTTATTAAGAACATGATTACAGGCACTTCCCAGGCTGACT
GTGCTGTCCTGATTGTTGCTGCTGGTGTTGGTGAATTCGAAGCAGGTATTTCCAAGAACG
GGCAGACCCGTGAGCATGCTCTTCTGGCCTACACCCTGGGTGTGAAACAGCTCATTGTTG
GCGTTAACAAAATGGATTCCACTGAGCCACCCTACAGCCAGAAGAGATATGAAGAGATTG
TAAAGGAAGTCAGCACCTACATTAAGAAAATTGGCTACAACCCTGATACAGTAGCATTTG
TGCCAATTTCTGGCTGGAATGGTGACAACATGCTGGAGCCAAGTGCTAATATGCCTTGGT
TCAAGGGATGGAAAGTCACCCGTAAAGATGGCAATGCCAGTGGAACCACACTGCTTGAAG
CTCTGGATTGCATTCTACCACCAACTCGTCCAACTGACAAGCCCTTGCGCCTGCCCCTCC
AGGACGTCTACAAAATTGGTGGTATTGGTACAGTCCCTGTGGGCCGAGTGGAGACCGGTG
TTCTCAAACCTGGCATGGTGGTCACCTTTGCTCCAGTCAATGTTACAACTGAAGTCAAGT
CTGTTGAAATGCACCATGAAGCTTTGAGTGAAGCCCTTCCTGGGGACAACGTGGGCTTTA
ATGTCAAAAACGTGTCTGTCAAAGACGTTCGTCGTGGCAATGTGGCTGGTGACAGCAAAA
ATGACCCACCTATGGAAGCAGCTGGCTTTACAGCTCAGGTGATTATCCTGAACCATCCTG
GCCAGATCAGTGCTGGTTACGCACCTGTGCTGGATTGCCACACAGCTCACATTGCCTGCA
AGTTTGCTGAACTGAAGGAGAAGATTGATCGTCGTTCTGGGAAAAAGCTGGAAGATGGCC
CCAAGTTCTTGAAATCTGGTGATGCTGCCATTGTCGATATGGTTCCTGGCAAGCCCATGT
GTGTTGAGAGCTTCTCTGACTATCCTCCTCTGGGCCGATTTGCTGTTCGTGACATGAGAC
AGACAGTTGCTGTGGGTGTCATCAAAGCTGTGGACAAGAAGGCAGCTGGAGCTGGCAAGG
TCACCAAGTCTGCTCAGAAAGCTCAGAAGGCTAAATGAATATTATCCCCAATACCTGCCA
CCCCAGTCTTAATCAGTGGTGGAAGAACGGTCTCAGAACTGTTTGTCTCAATTGGCCATT
TAAGTTTAATAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGA
AAGGAGAATGTTTTGTGGACCATTTGTTTTGTGTGTGGCAGTTTTTAAGTTATTAGTTTT
TAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATCTGTCACAGAATTTTGAGA
CCCATTAAAAAAAGTTTAATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6IPS9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IPS9_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               618-777, + strand, RNAz p=0.986494
               

               
               1062-1180, - strand, RNAz p=0.52647
               

               
               1458-1577, + strand, RNAz p=0.537004

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               618-777, + strand, RNAz p=0.986494
               

               
               1062-1180, - strand, RNAz p=0.52647
               

               
               1458-1577, + strand, RNAz p=0.537004

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               22-905, gnl|bosTau2|chr10 (14624199-14623324)
               

               
               22-905, gnl|Hg17|chr7 (22324921-22324044)
               

               
               22-905, gnl|Mm7|chr2 (40562996-40563853)
               


               
               931-1704, gnl|bosTau2|chr10 (14623326-14622577)
               

               
               931-1704, gnl|Hg17|chr7 (22324046-22323250)
               

               
               931-1704, gnl|Mm7|chr2 (40563851-40564659)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-905, gnl|bosTau2|chr10 (14624199-14623324)
               

               
               22-905, gnl|Hg17|chr7 (22324921-22324044)
               

               
               22-905, gnl|Mm7|chr2 (40562996-40563853)
               


               
               931-1704, gnl|bosTau2|chr10 (14623326-14622577)
               

               
               931-1704, gnl|Hg17|chr7 (22324046-22323250)
               

               
               931-1704, gnl|Mm7|chr2 (40563851-40564659)

Expressed library(ies): 97 entry(ies)

More info

Expressed library(ies): 97 entry(ies)

Help | Less info


               
               bla (34.1955)
               

               
               csk (20.9711)
               

               
               fat (19.0181)
               

               
               ova (17.6911)
               

               
               cut (17.3322)
               

               
               spl (16.6094)
               

               
               sug (15.6568)
               

               
               elu (15.4143)
               

               
               sto (15.285)
               

               
               rec (14.0187)
               

               
               cty (13.9467)
               

               
               pro (13.8249)
               

               
               thg (13.4398)
               

               
               ese (12.7767)
               

               
               eep (12.5015)
               

               
               eye (12.4467)
               

               
               sin (12.4213)
               

               
               mcp (11.2628)
               

               
               nco (10.9979)
               

               
               cmu (10.8108)
               

               
               ski (10.4182)
               

               
               fty (10.3745)
               

               
               eru (10.3241)
               

               
               lnt (10.2462)
               

               
               clu (9.9306)
               

               
               eje (9.88338)
               

               
               ecc (9.66295)
               

               
               amn (9.60735)
               

               
               mgp (9.4579)
               

               
               mga (9.4521)
               

               
               cki (9.41837)
               

               
               med (9.41642)
               

               
               pgl (9.36019)
               

               
               nca (9.30742)
               

               
               nje (9.29152)
               

               
               cst (8.82229)
               

               
               nmm (8.36653)
               

               
               jca (8.20513)
               

               
               sag (8.03947)
               

               
               cje (7.93126)
               

               
               pty (7.42115)
               

               
               lun (7.37397)
               

               
               nep (7.357)
               

               
               aor (7.22515)
               

               
               gul (6.74836)
               

               
               spc (6.68858)
               

               
               ill (6.67252)
               

               
               cbl (6.54345)
               

               
               ece (6.42055)
               

               
               nlu (6.32547)
               

               
               csp (5.96389)
               

               
               hea (5.72597)
               

               
               lyg (5.72341)
               

               
               fce (5.70342)
               

               
               ebs (5.32355)
               

               
               sme (5.19243)
               

               
               kid (5.05968)
               

               
               tra (4.92368)
               

               
               ton (4.914)
               

               
               cov (4.88965)
               

               
               fcc (4.74684)
               

               
               fbs (4.559)
               

               
               cag (4.53583)
               

               
               ute (4.51467)
               

               
               col (4.48518)
               

               
               jej (4.45148)
               

               
               cly (4.34311)
               

               
               nbm (4.07231)
               

               
               ldo (3.8801)
               

               
               fli (3.85474)
               

               
               duo (3.62882)
               

               
               pan (3.53941)
               

               
               eli (3.33991)
               

               
               tes (3.32502)
               

               
               nms (3.20787)
               

               
               cte (2.9274)
               

               
               liv (2.92569)
               

               
               hlv (2.92438)
               

               
               lin (2.91206)
               

               
               che (2.72628)
               

               
               mgm (2.70514)
               

               
               ret (2.57467)
               

               
               ste (2.43375)
               

               
               ssp (2.30384)
               

               
               cbe (2.15311)
               

               
               fhi (2.03493)
               

               
               hyp (1.99971)
               

               
               tbr (1.85014)
               

               
               cga (1.67457)
               

               
               isp (1.50376)
               

               
               mas (1.47213)
               

               
               fco (1.25766)
               

               
               cli (0.91687)
               

               
               bfe (0.749288)
               

               
               vin (0.332557)
               

               
               ctl (0.306138)
               

               
               cbr (0.255951)

Expressed library(ies): 97 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (34.1955)
               

               
               csk (20.9711)
               

               
               fat (19.0181)
               

               
               ova (17.6911)
               

               
               cut (17.3322)
               

               
               spl (16.6094)
               

               
               sug (15.6568)
               

               
               elu (15.4143)
               

               
               sto (15.285)
               

               
               rec (14.0187)
               

               
               cty (13.9467)
               

               
               pro (13.8249)
               

               
               thg (13.4398)
               

               
               ese (12.7767)
               

               
               eep (12.5015)
               

               
               eye (12.4467)
               

               
               sin (12.4213)
               

               
               mcp (11.2628)
               

               
               nco (10.9979)
               

               
               cmu (10.8108)
               

               
               ski (10.4182)
               

               
               fty (10.3745)
               

               
               eru (10.3241)
               

               
               lnt (10.2462)
               

               
               clu (9.9306)
               

               
               eje (9.88338)
               

               
               ecc (9.66295)
               

               
               amn (9.60735)
               

               
               mgp (9.4579)
               

               
               mga (9.4521)
               

               
               cki (9.41837)
               

               
               med (9.41642)
               

               
               pgl (9.36019)
               

               
               nca (9.30742)
               

               
               nje (9.29152)
               

               
               cst (8.82229)
               

               
               nmm (8.36653)
               

               
               jca (8.20513)
               

               
               sag (8.03947)
               

               
               cje (7.93126)
               

               
               pty (7.42115)
               

               
               lun (7.37397)
               

               
               nep (7.357)
               

               
               aor (7.22515)
               

               
               gul (6.74836)
               

               
               spc (6.68858)
               

               
               ill (6.67252)
               

               
               cbl (6.54345)
               

               
               ece (6.42055)
               

               
               nlu (6.32547)
               

               
               csp (5.96389)
               

               
               hea (5.72597)
               

               
               lyg (5.72341)
               

               
               fce (5.70342)
               

               
               ebs (5.32355)
               

               
               sme (5.19243)
               

               
               kid (5.05968)
               

               
               tra (4.92368)
               

               
               ton (4.914)
               

               
               cov (4.88965)
               

               
               fcc (4.74684)
               

               
               fbs (4.559)
               

               
               cag (4.53583)
               

               
               ute (4.51467)
               

               
               col (4.48518)
               

               
               jej (4.45148)
               

               
               cly (4.34311)
               

               
               nbm (4.07231)
               

               
               ldo (3.8801)
               

               
               fli (3.85474)
               

               
               duo (3.62882)
               

               
               pan (3.53941)
               

               
               eli (3.33991)
               

               
               tes (3.32502)
               

               
               nms (3.20787)
               

               
               cte (2.9274)
               

               
               liv (2.92569)
               

               
               hlv (2.92438)
               

               
               lin (2.91206)
               

               
               che (2.72628)
               

               
               mgm (2.70514)
               

               
               ret (2.57467)
               

               
               ste (2.43375)
               

               
               ssp (2.30384)
               

               
               cbe (2.15311)
               

               
               fhi (2.03493)
               

               
               hyp (1.99971)
               

               
               tbr (1.85014)
               

               
               cga (1.67457)
               

               
               isp (1.50376)
               

               
               mas (1.47213)
               

               
               fco (1.25766)
               

               
               cli (0.91687)
               

               
               bfe (0.749288)
               

               
               vin (0.332557)
               

               
               ctl (0.306138)
               

               
               cbr (0.255951)

	618-777, + strand, RNAz p=0.986494
	1062-1180, - strand, RNAz p=0.52647
	1458-1577, + strand, RNAz p=0.537004

	22-905, gnl\|bosTau2\|chr10 (14624199-14623324)
	22-905, gnl\|Hg17\|chr7 (22324921-22324044)
	22-905, gnl\|Mm7\|chr2 (40562996-40563853)

	931-1704, gnl\|bosTau2\|chr10 (14623326-14622577)
	931-1704, gnl\|Hg17\|chr7 (22324046-22323250)
	931-1704, gnl\|Mm7\|chr2 (40563851-40564659)

	bla (34.1955)
	csk (20.9711)
	fat (19.0181)
	ova (17.6911)
	cut (17.3322)
	spl (16.6094)
	sug (15.6568)
	elu (15.4143)
	sto (15.285)
	rec (14.0187)
	cty (13.9467)
	pro (13.8249)
	thg (13.4398)
	ese (12.7767)
	eep (12.5015)
	eye (12.4467)
	sin (12.4213)
	mcp (11.2628)
	nco (10.9979)
	cmu (10.8108)
	ski (10.4182)
	fty (10.3745)
	eru (10.3241)
	lnt (10.2462)
	clu (9.9306)
	eje (9.88338)
	ecc (9.66295)
	amn (9.60735)
	mgp (9.4579)
	mga (9.4521)
	cki (9.41837)
	med (9.41642)
	pgl (9.36019)
	nca (9.30742)
	nje (9.29152)
	cst (8.82229)
	nmm (8.36653)
	jca (8.20513)
	sag (8.03947)
	cje (7.93126)
	pty (7.42115)
	lun (7.37397)
	nep (7.357)
	aor (7.22515)
	gul (6.74836)
	spc (6.68858)
	ill (6.67252)
	cbl (6.54345)
	ece (6.42055)
	nlu (6.32547)
	csp (5.96389)
	hea (5.72597)
	lyg (5.72341)
	fce (5.70342)
	ebs (5.32355)
	sme (5.19243)
	kid (5.05968)
	tra (4.92368)
	ton (4.914)
	cov (4.88965)
	fcc (4.74684)
	fbs (4.559)
	cag (4.53583)
	ute (4.51467)
	col (4.48518)
	jej (4.45148)
	cly (4.34311)
	nbm (4.07231)
	ldo (3.8801)
	fli (3.85474)
	duo (3.62882)
	pan (3.53941)
	eli (3.33991)
	tes (3.32502)
	nms (3.20787)
	cte (2.9274)
	liv (2.92569)
	hlv (2.92438)
	lin (2.91206)
	che (2.72628)
	mgm (2.70514)
	ret (2.57467)
	ste (2.43375)
	ssp (2.30384)
	cbe (2.15311)
	fhi (2.03493)
	hyp (1.99971)
	tbr (1.85014)
	cga (1.67457)
	isp (1.50376)
	mas (1.47213)
	fco (1.25766)
	cli (0.91687)
	bfe (0.749288)
	vin (0.332557)
	ctl (0.306138)
	cbr (0.255951)