Non-Coding RNA Search

Ss1.1-Liv1-LVR010103C02.5

Sequence:


               
               TCTTAACTCAGACTTTTTATTGTACTCTAGTAAAAACTTCCCAGAGCCACGGTGGGGGGG
GAAATGGGTAAAGGGTGGGCGGAAGTTGGGGACGCTGAGGATCAGGTCTCCAGCATGTCA
GTCCAGTGTTCCTCTTCTAATTCCAAGTCCTCTTCCTCCTCGGTGCCCATCTGGCTCAGC
CAGACCAGGTCTCCCCACAGCACTGAGTTCTTACAGCCAGGGCATTGGCCCTCCAGCGGC
AGAAGCTGCCCTGGCTCCTCATGCAGGAACTCTTCTGCCAGGCAGATCACATGCGCCCTG
AGGGAGCAGCCAGGGTGGGGGCAACACAGGGGACCCTCTTCATCCTGGAGTGCGCAAGCG
CACACGGTGCACAGAGCCTCCGCGGCGTGCTCCGGCTGGGACTCGGACTCCGTGCTGGCC
AAGGGAACTGCGCCGCACTTCCGGGCCAGGGCCCGGGGCGGCGGAGGCCCGAAGGCCAGG
GGCACGTGCGGTGGCGGTGGCGGGCAGAGATCCTGGCGGAAGTCGGTGCGCAGCCAGCGC
AGGGTGAGCGGGAGGCGCGCCCACGGGGGCACGCGCAGCATGTGTGCCAGCACGCGCAGG
TGGAAGGCGAAGGCTGCCTCGCCGCGCAGGCGCGGACCCAAATGGGCCAAGCGGCGCGAG
GCCTTCGGGTGCTGCCAGGCCCATTCGAACCGAAGGGCGGCCACCGCGGAGGGGAAGCCG
TGTACTATGAGCACCATCTCCCAAGGCCCGCGGCCACTGGTCCGCCAGGCCCCGCCTTTT
TTACGGCCCGCGTTGTGCTGCTGCTCCCGACGAGCAGGGTTGACTGTGAACCCCACGTAG
ACGCGACCTCGGTGTCGAGGGTTCAGGCAGTAGAGCAGGTAGACGCCGAAGAAGCGCCCG
GCCCTCGCCGCGCCCCCGGCGGGGCCCATTGGAACTTGCTCTGGCCTGTGACCCCGGAGA
GAGCAGGCTTGCCAGGGCTGCCAGATGCTTGTCTAGGAAAAAGCGCTTGGGGCGATCCCG
AGTACCCTAAAGGCCACAGCAGTGCAGGCTAGTGCACCCTCTCCTAGCTGGACCTAGGGT
ATTCAAACCGGCGCACAGAACCCAGGCTGCTATGCAGACGGCAGGCACCAATGGGCGTCC
GCTGGGGCCGATTCGGTCCTTATGCAGACTCTCATTGGCTGACAGATGTTAGGAGCAGAA
CCCCCCAGGATTGTTGGAAAACCGGGCTTGAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTAACTCAGACTTTTTATTGTACTCTAGTAAAAACTTCCCAGAGCCACGGTGGGGGGG
GAAATGGGTAAAGGGTGGGCGGAAGTTGGGGACGCTGAGGATCAGGTCTCCAGCATGTCA
GTCCAGTGTTCCTCTTCTAATTCCAAGTCCTCTTCCTCCTCGGTGCCCATCTGGCTCAGC
CAGACCAGGTCTCCCCACAGCACTGAGTTCTTACAGCCAGGGCATTGGCCCTCCAGCGGC
AGAAGCTGCCCTGGCTCCTCATGCAGGAACTCTTCTGCCAGGCAGATCACATGCGCCCTG
AGGGAGCAGCCAGGGTGGGGGCAACACAGGGGACCCTCTTCATCCTGGAGTGCGCAAGCG
CACACGGTGCACAGAGCCTCCGCGGCGTGCTCCGGCTGGGACTCGGACTCCGTGCTGGCC
AAGGGAACTGCGCCGCACTTCCGGGCCAGGGCCCGGGGCGGCGGAGGCCCGAAGGCCAGG
GGCACGTGCGGTGGCGGTGGCGGGCAGAGATCCTGGCGGAAGTCGGTGCGCAGCCAGCGC
AGGGTGAGCGGGAGGCGCGCCCACGGGGGCACGCGCAGCATGTGTGCCAGCACGCGCAGG
TGGAAGGCGAAGGCTGCCTCGCCGCGCAGGCGCGGACCCAAATGGGCCAAGCGGCGCGAG
GCCTTCGGGTGCTGCCAGGCCCATTCGAACCGAAGGGCGGCCACCGCGGAGGGGAAGCCG
TGTACTATGAGCACCATCTCCCAAGGCCCGCGGCCACTGGTCCGCCAGGCCCCGCCTTTT
TTACGGCCCGCGTTGTGCTGCTGCTCCCGACGAGCAGGGTTGACTGTGAACCCCACGTAG
ACGCGACCTCGGTGTCGAGGGTTCAGGCAGTAGAGCAGGTAGACGCCGAAGAAGCGCCCG
GCCCTCGCCGCGCCCCCGGCGGGGCCCATTGGAACTTGCTCTGGCCTGTGACCCCGGAGA
GAGCAGGCTTGCCAGGGCTGCCAGATGCTTGTCTAGGAAAAAGCGCTTGGGGCGATCCCG
AGTACCCTAAAGGCCACAGCAGTGCAGGCTAGTGCACCCTCTCCTAGCTGGACCTAGGGT
ATTCAAACCGGCGCACAGAACCCAGGCTGCTATGCAGACGGCAGGCACCAATGGGCGTCC
GCTGGGGCCGATTCGGTCCTTATGCAGACTCTCATTGGCTGACAGATGTTAGGAGCAGAA
CCCCCCAGGATTGTTGGAAAACCGGGCTTGAGAGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6NTG6_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6NTG6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               3-134, + strand, RNAz p=0.630087

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-134, + strand, RNAz p=0.630087

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               3-217, gnl|bosTau2|chr17 (23246996-23246784)
               

               
               3-217, gnl|Hg17|chr16 (29377034-29376749)
               


               
               332-696, gnl|bosTau2|chr25 (25078800-25079157)
               

               
               332-696, gnl|Mm7|chr7 (122788874-122789224)
               


               
               741-1149, gnl|bosTau2|chr25 (25079876-25080276)
               

               
               741-1149, gnl|Mm7|chr7 (122791982-122792414)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-217, gnl|bosTau2|chr17 (23246996-23246784)
               

               
               3-217, gnl|Hg17|chr16 (29377034-29376749)
               


               
               332-696, gnl|bosTau2|chr25 (25078800-25079157)
               

               
               332-696, gnl|Mm7|chr7 (122788874-122789224)
               


               
               741-1149, gnl|bosTau2|chr25 (25079876-25080276)
               

               
               741-1149, gnl|Mm7|chr7 (122791982-122792414)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               pla (0.66836)
               

               
               fhi (0.339155)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.66836)
               

               
               fhi (0.339155)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               jca (0.11396)

	3-217, gnl\|bosTau2\|chr17 (23246996-23246784)
	3-217, gnl\|Hg17\|chr16 (29377034-29376749)

	332-696, gnl\|bosTau2\|chr25 (25078800-25079157)
	332-696, gnl\|Mm7\|chr7 (122788874-122789224)

	741-1149, gnl\|bosTau2\|chr25 (25079876-25080276)
	741-1149, gnl\|Mm7\|chr7 (122791982-122792414)

	pla (0.66836)
	fhi (0.339155)
	mas (0.210305)
	fli (0.202881)
	ute (0.132784)
	cbr (0.127975)
	jca (0.11396)