Ss1.1-Liv1-LVR010103D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGTGGACCCCAGCGGGAAACTCGCCTGAGCTCAGAATGGGACGGGGAGCAACCTTTC CCCAGCCTCATCAGCAGAAGTGTGACCAAGAGCAGTCATGACGTCTTACAGCGACAAAGG AGAGAAGCCCGAGAGAGGCCGATTCCTCCACTTCCACTCCGTGACCTTCTGGGTTGGCAA TGCCAAACAGGCTGCGTCGTACTACTGCAGCAAGATAGGCTTCGAACCCCTAGCCTACAA GGGCCTGGAGACGGGGTCCCGGGAGGTGGTCAGCCACGTGGTCAAGCAAGATAAGATTGT GTTTGTCTTCTCCTCTGCCCTCAACCCCTGGAACAAAGAGATGGGCGATCACCTGGTGAA ACACGGCGACGGAGTGAAGGACATTGCGTTCGAGGTGGAAGACTGTGACTACATAGTGCA GAAAGCCCGGGAACGGGGCGCCATAATCGTACGGGAGCCCTGGATAGAGCAAGACAAGTT TGGGAAGGTGAAGTTTGCTGTGCTGCAGACGTTCGGGGACACCACACACACGCTGGTGGA GAAGATGAACTACACCGGCTGCTTTCTGCCTGGATTCGAGGCCCCAACCTTCACAGACCC TCTACTTTCCAAGCTGCCCAAATGTGGTCTCGAGATAATTGATCACATTGTGGGGAACCA GCCTGATCAGGAGATGGAGTCTGCCTCTCAATGGTACATGAGGAACCTACAGTTCCACCG GTTCTGGTCTGTGGATGACACGCAGATACACACGGAGTACAGTGCTCTGAGGTCCGTTGT GATGGCCAATTATGAGGAGTCCATCAAGATGCCCATTAATGAGCCAGCGCCGGGCAAGAA GAAGTCCCAGATCCAGGAATATGTGGACTATAACGGGGGCGCTGGGGTCCAGCACATTGC TCTCAAGACGGAAGACATCATCACAGCGATTCGCAGCTTGAGAGAGAGAGGTGTGGAGTT CTTGGCTGTTCCATTCACCTACTACAAACAACTGCAGGAGAAGCTCAAGTCGGCCAAGAT CCGGGTAAAGGAGAGCATCGATGTCCTGGAGGAGCTGAAAATCCTGGTGGACTACGACGA GAAAGGATACCTCCTGCAGATTTTCACCAAACCCATGCAGGACCGACCGACAGTCTTCCT GGAAGTCATTCAGCGCAACAACCACCAGGGTTTTGGAGCCGGCAACTTCAACTCACTATT CAAGGCCTTCGAGGAGGAGCAAGAACTTCGGGGTAACCTCACGGACACAGACCCCAACGG GGTCGCGTTCCGCCTGTAGGCCCGGCTGATCCCGCCTGACCCACCGAAGCCCCTCCCACC TGCGGCGTATGGGGCCACGCCCCCTCGCCCTGGAGCACGCCCACTCCCCACCCCCAAGAC TCCACCCACCTCCTACCCCTCCCCTCAGTTGGGCCGCTCCCTTTTCCACCCTTCGGAATA AAGCTGACCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGTGGACCCCAGCGGGAAACTCGCCTGAGCTCAGAATGGGACGGGGAGCAACCTTTC CCCAGCCTCATCAGCAGAAGTGTGACCAAGAGCAGTCATGACGTCTTACAGCGACAAAGG AGAGAAGCCCGAGAGAGGCCGATTCCTCCACTTCCACTCCGTGACCTTCTGGGTTGGCAA TGCCAAACAGGCTGCGTCGTACTACTGCAGCAAGATAGGCTTCGAACCCCTAGCCTACAA GGGCCTGGAGACGGGGTCCCGGGAGGTGGTCAGCCACGTGGTCAAGCAAGATAAGATTGT GTTTGTCTTCTCCTCTGCCCTCAACCCCTGGAACAAAGAGATGGGCGATCACCTGGTGAA ACACGGCGACGGAGTGAAGGACATTGCGTTCGAGGTGGAAGACTGTGACTACATAGTGCA GAAAGCCCGGGAACGGGGCGCCATAATCGTACGGGAGCCCTGGATAGAGCAAGACAAGTT TGGGAAGGTGAAGTTTGCTGTGCTGCAGACGTTCGGGGACACCACACACACGCTGGTGGA GAAGATGAACTACACCGGCTGCTTTCTGCCTGGATTCGAGGCCCCAACCTTCACAGACCC TCTACTTTCCAAGCTGCCCAAATGTGGTCTCGAGATAATTGATCACATTGTGGGGAACCA GCCTGATCAGGAGATGGAGTCTGCCTCTCAATGGTACATGAGGAACCTACAGTTCCACCG GTTCTGGTCTGTGGATGACACGCAGATACACACGGAGTACAGTGCTCTGAGGTCCGTTGT GATGGCCAATTATGAGGAGTCCATCAAGATGCCCATTAATGAGCCAGCGCCGGGCAAGAA GAAGTCCCAGATCCAGGAATATGTGGACTATAACGGGGGCGCTGGGGTCCAGCACATTGC TCTCAAGACGGAAGACATCATCACAGCGATTCGCAGCTTGAGAGAGAGAGGTGTGGAGTT CTTGGCTGTTCCATTCACCTACTACAAACAACTGCAGGAGAAGCTCAAGTCGGCCAAGAT CCGGGTAAAGGAGAGCATCGATGTCCTGGAGGAGCTGAAAATCCTGGTGGACTACGACGA GAAAGGATACCTCCTGCAGATTTTCACCAAACCCATGCAGGACCGACCGACAGTCTTCCT GGAAGTCATTCAGCGCAACAACCACCAGGGTTTTGGAGCCGGCAACTTCAACTCACTATT CAAGGCCTTCGAGGAGGAGCAAGAACTTCGGGGTAACCTCACGGACACAGACCCCAACGG GGTCGCGTTCCGCCTGTAGGCCCGGCTGATCCCGCCTGACCCACCGAAGCCCCTCCCACC TGCGGCGTATGGGGCCACGCCCCCTCGCCCTGGAGCACGCCCACTCCCCACCCCCAAGAC TCCACCCACCTCCTACCCCTCCCCTCAGTTGGGCCGCTCCCTTTTCCACCCTTCGGAATA AAGCTGACCCAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 188-290, gnl|bosTau2|chr17 (28766941-28766839) | |
| 188-290, gnl|canFam2|chr26 (10449165-10449032) | |
| 188-290, gnl|danRer3|chr11 (14468053-14467941) | |
| 188-290, gnl|dasNov1|scaffold_41888 (5215-5350) | |
| 188-290, gnl|echTel1|scaffold_306951 (8268-8403) | |
| 188-290, gnl|fr1|chrUn (264523284-264523411) | |
| 188-290, gnl|hg17|chr12 (120757923-120758062) | |
| 188-290, gnl|Hg17|chr12 (120758061-120757959) | |
| 188-290, gnl|mm7|chr5 (122411942-122412063) | |
| 188-290, gnl|Mm7|chr5 (122412062-122411960) | |
| 188-290, gnl|monDom2|scaffold_97 (2064535-2064669) | |
| 188-290, gnl|panTro1|chrUn_random (17011247-17011386) | |
| 188-290, gnl|rheMac2|chr11 (122947564-122947703) | |
| 188-290, gnl|rn3|chr12 (34411833-34411709) | |
| 188-290, gnl|tetNig1|chr7 (1763814-1763693) | |
| 515-616, gnl|bosTau2|chr17 (28763056-28762955) | |
| 515-616, gnl|canFam2|chr26 (10452563-10452421) | |
| 515-616, gnl|danRer3|chr11 (14469471-14469357) | |
| 515-616, gnl|dasNov1|scaffold_41888 (2181-2323) | |
| 515-616, gnl|echTel1|scaffold_306951 (4950-5093) | |
| 515-616, gnl|fr1|chrUn (264521802-264521926) | |
| 515-616, gnl|galGal2|chr15 (5642754-5642900) | |
| 515-616, gnl|hg17|chr12 (120750296-120750438) | |
| 515-616, gnl|Hg17|chr12 (120750413-120750312) | |
| 515-616, gnl|loxAfr1|scaffold_83456 (613-470) | |
| 515-616, gnl|mm7|chr5 (122408684-122408825) | |
| 515-616, gnl|Mm7|chr5 (122408801-122408700) | |
| 515-616, gnl|monDom2|scaffold_97 (2059366-2059498) | |
| 515-616, gnl|oryCun1|scaffold_192722 (20865-20722) | |
| 515-616, gnl|panTro1|chrUn_random (17003885-17004027) | |
| 515-616, gnl|rheMac2|chr11 (122939694-122939836) | |
| 515-616, gnl|rn3|chr12 (34415664-34415521) | |
| 515-616, gnl|tetNig1|chr7 (1764666-1764551) | |
| 515-616, gnl|xenTro1|scaffold_791 (240321-240438) | |
| 693-857, gnl|bosTau2|chr17 (28761011-28760847) | |
| 693-857, gnl|Hg17|chr12 (120747841-120747677) | |
| 693-857, gnl|Mm7|chr5 (122406787-122406623) | |
| 928-1066, gnl|bosTau2|chr17 (28759254-28759114) | |
| 928-1066, gnl|Hg17|chr12 (120744459-120744320) | |
| 928-1066, gnl|Mm7|chr5 (122405006-122404868) | |
| 1165-1367, gnl|bosTau2|chr17 (28756813-28756601) | |
| 1165-1367, gnl|Hg17|chr12 (120740468-120740282) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 188-290, gnl|bosTau2|chr17 (28766941-28766839) | |
| 188-290, gnl|canFam2|chr26 (10449165-10449032) | |
| 188-290, gnl|danRer3|chr11 (14468053-14467941) | |
| 188-290, gnl|dasNov1|scaffold_41888 (5215-5350) | |
| 188-290, gnl|echTel1|scaffold_306951 (8268-8403) | |
| 188-290, gnl|fr1|chrUn (264523284-264523411) | |
| 188-290, gnl|hg17|chr12 (120757923-120758062) | |
| 188-290, gnl|Hg17|chr12 (120758061-120757959) | |
| 188-290, gnl|mm7|chr5 (122411942-122412063) | |
| 188-290, gnl|Mm7|chr5 (122412062-122411960) | |
| 188-290, gnl|monDom2|scaffold_97 (2064535-2064669) | |
| 188-290, gnl|panTro1|chrUn_random (17011247-17011386) | |
| 188-290, gnl|rheMac2|chr11 (122947564-122947703) | |
| 188-290, gnl|rn3|chr12 (34411833-34411709) | |
| 188-290, gnl|tetNig1|chr7 (1763814-1763693) | |
| 515-616, gnl|bosTau2|chr17 (28763056-28762955) | |
| 515-616, gnl|canFam2|chr26 (10452563-10452421) | |
| 515-616, gnl|danRer3|chr11 (14469471-14469357) | |
| 515-616, gnl|dasNov1|scaffold_41888 (2181-2323) | |
| 515-616, gnl|echTel1|scaffold_306951 (4950-5093) | |
| 515-616, gnl|fr1|chrUn (264521802-264521926) | |
| 515-616, gnl|galGal2|chr15 (5642754-5642900) | |
| 515-616, gnl|hg17|chr12 (120750296-120750438) | |
| 515-616, gnl|Hg17|chr12 (120750413-120750312) | |
| 515-616, gnl|loxAfr1|scaffold_83456 (613-470) | |
| 515-616, gnl|mm7|chr5 (122408684-122408825) | |
| 515-616, gnl|Mm7|chr5 (122408801-122408700) | |
| 515-616, gnl|monDom2|scaffold_97 (2059366-2059498) | |
| 515-616, gnl|oryCun1|scaffold_192722 (20865-20722) | |
| 515-616, gnl|panTro1|chrUn_random (17003885-17004027) | |
| 515-616, gnl|rheMac2|chr11 (122939694-122939836) | |
| 515-616, gnl|rn3|chr12 (34415664-34415521) | |
| 515-616, gnl|tetNig1|chr7 (1764666-1764551) | |
| 515-616, gnl|xenTro1|scaffold_791 (240321-240438) | |
| 693-857, gnl|bosTau2|chr17 (28761011-28760847) | |
| 693-857, gnl|Hg17|chr12 (120747841-120747677) | |
| 693-857, gnl|Mm7|chr5 (122406787-122406623) | |
| 928-1066, gnl|bosTau2|chr17 (28759254-28759114) | |
| 928-1066, gnl|Hg17|chr12 (120744459-120744320) | |
| 928-1066, gnl|Mm7|chr5 (122405006-122404868) | |
| 1165-1367, gnl|bosTau2|chr17 (28756813-28756601) | |
| 1165-1367, gnl|Hg17|chr12 (120740468-120740282) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.611247) |