Ss1.1-Liv1-LVR010103D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGAAGTTCTGCGCCAGAAGCTGTTCGCACTGCAAGCCGAAATCCACCGACTGAAGAAAG AGGAGCCACAGCCAGAAGAGGAGGAGGTCCTGGTCCAACACAAATTGCCTCCTTACGTCT CCAACATGGACCGCCTGGGGGACTCGGAACTAGCCATGGTATGCAGCCAGAGGAACGCAT CCCTCTCTCAGTCACCACGTGTGGGCTTCCTGTCCTCCCTGCTGCCTCAGAGTAAGAAGA GCCCGTCAAGGTTGTCACCTGCCCAGGGCCCCCCTCAAGCTCAAAGCTTGGCCAAGAAAG AGCCGTTTGGTGGCCAGGCCACCAAGGGCAGGGAGCCAGCGAGCGCACCCAAGGATGGGA AGAGCCCCTTCAGCGGGCTGGCCGCTGGGGAGTCCGGCTGGTCTCAGCACCGGCAGCGGC GCCTGCAGGACCACGGCAAGGAGCGGAAGGAGCTCCTCTCCATGACGTTGCAGTGTGCGG AGAAGAAGCCTGAAGCTGGTGGCCCAGAAGTAGAGCCCTGCCCGGAGCCCCACATGGAGG CGCTGGAGTCGCTGACTCGGGTCCCCGCGGCAGGCCCCGAGGGTGGGGGTGTCCGCCCTG AGCAGCCCTTCATCGTGCTGGGGCAGGAGGAGTACGGGGAGCACCACTCCTCCATCATGC ACTGCAGAGTGGACTGCTCCGGGAGGAGGGTCGCCAGCTTGGATGTCGACGGGGTCATTA AAGTGTGGTCTTTCAACCCCATCATGCAGACCAAGGCATCTTCCATTTCCAAGTCGCCGC TGCTTTCTTTAGAGTGGGCCACCAAGCGGGACAGGCTGCTCCTGCTGGGCAGCGGGATGG GCACGGTGCGCCTCTATGACACGGAAGCCAAGAAGAACCTCTGTGTGATCAACATCAATG ACGACATGCCCCGGATCCTGTCTCTCGCATGTAGCCCCAGCGGGGCCTCTTTCGTCTGTT CAGCTGCAGCTCCGAGCCTCGCCGCCCAGATGGACTTGTCAGCCCCAGACATCGGCAGCA AGGGCACTAACCAGGTTCCTGGGAAGCTGCTGCTGTGGGACACGAGAACCATGAAGCAGC AGCTCCAGTTCTCCCTGGATCCGGAGCCCATTGCCATCAACTGCACAGCCTTCAATCACA ATGGAAACCTGCTGGTCACGGGGGCGGCCGACGGCGTCATCCGGCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGAAGTTCTGCGCCAGAAGCTGTTCGCACTGCAAGCCGAAATCCACCGACTGAAGAAAG AGGAGCCACAGCCAGAAGAGGAGGAGGTCCTGGTCCAACACAAATTGCCTCCTTACGTCT CCAACATGGACCGCCTGGGGGACTCGGAACTAGCCATGGTATGCAGCCAGAGGAACGCAT CCCTCTCTCAGTCACCACGTGTGGGCTTCCTGTCCTCCCTGCTGCCTCAGAGTAAGAAGA GCCCGTCAAGGTTGTCACCTGCCCAGGGCCCCCCTCAAGCTCAAAGCTTGGCCAAGAAAG AGCCGTTTGGTGGCCAGGCCACCAAGGGCAGGGAGCCAGCGAGCGCACCCAAGGATGGGA AGAGCCCCTTCAGCGGGCTGGCCGCTGGGGAGTCCGGCTGGTCTCAGCACCGGCAGCGGC GCCTGCAGGACCACGGCAAGGAGCGGAAGGAGCTCCTCTCCATGACGTTGCAGTGTGCGG AGAAGAAGCCTGAAGCTGGTGGCCCAGAAGTAGAGCCCTGCCCGGAGCCCCACATGGAGG CGCTGGAGTCGCTGACTCGGGTCCCCGCGGCAGGCCCCGAGGGTGGGGGTGTCCGCCCTG AGCAGCCCTTCATCGTGCTGGGGCAGGAGGAGTACGGGGAGCACCACTCCTCCATCATGC ACTGCAGAGTGGACTGCTCCGGGAGGAGGGTCGCCAGCTTGGATGTCGACGGGGTCATTA AAGTGTGGTCTTTCAACCCCATCATGCAGACCAAGGCATCTTCCATTTCCAAGTCGCCGC TGCTTTCTTTAGAGTGGGCCACCAAGCGGGACAGGCTGCTCCTGCTGGGCAGCGGGATGG GCACGGTGCGCCTCTATGACACGGAAGCCAAGAAGAACCTCTGTGTGATCAACATCAATG ACGACATGCCCCGGATCCTGTCTCTCGCATGTAGCCCCAGCGGGGCCTCTTTCGTCTGTT CAGCTGCAGCTCCGAGCCTCGCCGCCCAGATGGACTTGTCAGCCCCAGACATCGGCAGCA AGGGCACTAACCAGGTTCCTGGGAAGCTGCTGCTGTGGGACACGAGAACCATGAAGCAGC AGCTCCAGTTCTCCCTGGATCCGGAGCCCATTGCCATCAACTGCACAGCCTTCAATCACA ATGGAAACCTGCTGGTCACGGGGGCGGCCGACGGCGTCATCCGGCTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 201-318, - strand, RNAz p=0.640693 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 201-318, - strand, RNAz p=0.640693 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 19-151, gnl|bosTau2|chr4 (54246306-54246174) | |
| 19-151, gnl|canFam2|chr16 (15920102-15919938) | |
| 19-151, gnl|danRer3|chr24 (24549552-24549684) | |
| 19-151, gnl|dasNov1|scaffold_230532 (3536-3380) | |
| 19-151, gnl|echTel1|scaffold_216438 (401-558) | |
| 19-151, gnl|galGal2|chr1 (44664012-44663864) | |
| 19-151, gnl|hg17|chr7 (134347931-134348087) | |
| 19-151, gnl|Hg17|chr7 (134348067-134347935) | |
| 19-151, gnl|loxAfr1|scaffold_46813 (13026-13181) | |
| 19-151, gnl|mm7|chr6 (34836683-34836842) | |
| 19-151, gnl|Mm7|chr6 (34836822-34836687) | |
| 19-151, gnl|monDom2|scaffold_22 (8426641-8426485) | |
| 19-151, gnl|panTro1|chr6 (137042348-137042504) | |
| 19-151, gnl|rheMac2|chr3 (172686330-172686486) | |
| 19-151, gnl|rn3|chr4 (62574781-62574937) | |
| 19-151, gnl|tetNig1|chrUn_random (91057997-91057893) | |
| 19-151, gnl|xenTro1|scaffold_332 (64487-64361) | |
| 152-318, gnl|bosTau2|chr4 (54244788-54244622) | |
| 152-318, gnl|Hg17|chr7 (134346440-134346274) | |
| 152-318, gnl|Mm7|chr6 (34835884-34835718) | |
| 470-672, gnl|bosTau2|chr4 (54234488-54234287) | |
| 470-672, gnl|Hg17|chr7 (134338348-134338147) | |
| 470-672, gnl|Mm7|chr6 (34823734-34823539) | |
| 913-1082, gnl|bosTau2|chr4 (54232825-54232656) | |
| 913-1082, gnl|Hg17|chr7 (134335407-134335238) | |
| 913-1082, gnl|Mm7|chr6 (34820325-34820156) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-151, gnl|bosTau2|chr4 (54246306-54246174) | |
| 19-151, gnl|canFam2|chr16 (15920102-15919938) | |
| 19-151, gnl|danRer3|chr24 (24549552-24549684) | |
| 19-151, gnl|dasNov1|scaffold_230532 (3536-3380) | |
| 19-151, gnl|echTel1|scaffold_216438 (401-558) | |
| 19-151, gnl|galGal2|chr1 (44664012-44663864) | |
| 19-151, gnl|hg17|chr7 (134347931-134348087) | |
| 19-151, gnl|Hg17|chr7 (134348067-134347935) | |
| 19-151, gnl|loxAfr1|scaffold_46813 (13026-13181) | |
| 19-151, gnl|mm7|chr6 (34836683-34836842) | |
| 19-151, gnl|Mm7|chr6 (34836822-34836687) | |
| 19-151, gnl|monDom2|scaffold_22 (8426641-8426485) | |
| 19-151, gnl|panTro1|chr6 (137042348-137042504) | |
| 19-151, gnl|rheMac2|chr3 (172686330-172686486) | |
| 19-151, gnl|rn3|chr4 (62574781-62574937) | |
| 19-151, gnl|tetNig1|chrUn_random (91057997-91057893) | |
| 19-151, gnl|xenTro1|scaffold_332 (64487-64361) | |
| 152-318, gnl|bosTau2|chr4 (54244788-54244622) | |
| 152-318, gnl|Hg17|chr7 (134346440-134346274) | |
| 152-318, gnl|Mm7|chr6 (34835884-34835718) | |
| 470-672, gnl|bosTau2|chr4 (54234488-54234287) | |
| 470-672, gnl|Hg17|chr7 (134338348-134338147) | |
| 470-672, gnl|Mm7|chr6 (34823734-34823539) | |
| 913-1082, gnl|bosTau2|chr4 (54232825-54232656) | |
| 913-1082, gnl|Hg17|chr7 (134335407-134335238) | |
| 913-1082, gnl|Mm7|chr6 (34820325-34820156) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) | |
| cty (0.10408) |