Ss1.1-Liv1-LVR010104B10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGAGAGACTCCAGAGACCAGAACATGGAAGAAGTCTTCCGGGCGTGCAGGAACTGCAA AAGAAGTGTGGCCTCTGGCCATTTGGCCCTCCATGAGGCCCACTGCCAGCTGTTCCTGGT CCTCTGCCAGGAGTGCAAGGGGCCAGTCCTTCAGACAGAGATGGAAGAGCACTGCCAGGG TGGGCACAAGCAGGTGGGGTGCGCGATGTGTCAGCAGAGCCTGCCGAGGCACTTGCTGGA GATTCACGAGACCAAGGAATGCCCAGAGCGCCCGGTCAAGTGCCAGTTCTGTGAGCTGGC CGTGCGCCTCAACAAGCTGGAGATCCATGAGCACCACTGTGGCAGGCAGACAGAGCTCTG CGCAGACTGCGGCCAGCACATCATGCTCCGCGTGCTGGCCCAGCACCGAGATGTGTGTTG GGCTGAGCAGACCCTGCTCTGGAGAGGGAAGAAAATTCCAGCTCCTGAAAGCAACATCTG CTGTCATTATTGCAAACACATGATCCCAGGAAATAAGTATTTCCACCACCTGGGTAGATG CTGTCCAGTCTCAGATTCTGTGAAATATTTTCCAACTGGGAAACTAGAAATTCCTCCTTC ATCCCTTTCAAGTGAGGCTGCTGAAGATCAAATTTACATAGCAGAGAAAGATGTTCGTCC AAAGATGAAAAATATAAATGGATTTCCCCTTCCTTCGGAAAAGTCAACAAGGCAAGCACC AAGAGGCACAAACAAAACCACAGATCTGCCTTTGAAGTCTGATGGCAAGCTCAGGGCGTC CTCTCCTGCAGAAGATGATGCAGCCTATGACATCCTGAGGGGGTGTTCTCAGTGTGGCAT CCTCCTTCCCCTGCCAACCCTAAACCAACATCAGGGGAAATGCTGGCAGCTAGCTTCATC CAAAGGAAAACAAGTGAGAAGTTCCAGCTAGATTTGGAAAAGAAAAGGTACTGCAGATTT AGAGGAGTTTGTTTTGATACTGGTTTTCCTGCTTACTTTCTGTGCTAGTCTTTGCTTGTG GAAAGAGATGAGTTTTATTCACTGGGTTTCTTACTTGCAGAATAAAAGTTTGAGATTTTA AATAAAAAGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGAGAGACTCCAGAGACCAGAACATGGAAGAAGTCTTCCGGGCGTGCAGGAACTGCAA AAGAAGTGTGGCCTCTGGCCATTTGGCCCTCCATGAGGCCCACTGCCAGCTGTTCCTGGT CCTCTGCCAGGAGTGCAAGGGGCCAGTCCTTCAGACAGAGATGGAAGAGCACTGCCAGGG TGGGCACAAGCAGGTGGGGTGCGCGATGTGTCAGCAGAGCCTGCCGAGGCACTTGCTGGA GATTCACGAGACCAAGGAATGCCCAGAGCGCCCGGTCAAGTGCCAGTTCTGTGAGCTGGC CGTGCGCCTCAACAAGCTGGAGATCCATGAGCACCACTGTGGCAGGCAGACAGAGCTCTG CGCAGACTGCGGCCAGCACATCATGCTCCGCGTGCTGGCCCAGCACCGAGATGTGTGTTG GGCTGAGCAGACCCTGCTCTGGAGAGGGAAGAAAATTCCAGCTCCTGAAAGCAACATCTG CTGTCATTATTGCAAACACATGATCCCAGGAAATAAGTATTTCCACCACCTGGGTAGATG CTGTCCAGTCTCAGATTCTGTGAAATATTTTCCAACTGGGAAACTAGAAATTCCTCCTTC ATCCCTTTCAAGTGAGGCTGCTGAAGATCAAATTTACATAGCAGAGAAAGATGTTCGTCC AAAGATGAAAAATATAAATGGATTTCCCCTTCCTTCGGAAAAGTCAACAAGGCAAGCACC AAGAGGCACAAACAAAACCACAGATCTGCCTTTGAAGTCTGATGGCAAGCTCAGGGCGTC CTCTCCTGCAGAAGATGATGCAGCCTATGACATCCTGAGGGGGTGTTCTCAGTGTGGCAT CCTCCTTCCCCTGCCAACCCTAAACCAACATCAGGGGAAATGCTGGCAGCTAGCTTCATC CAAAGGAAAACAAGTGAGAAGTTCCAGCTAGATTTGGAAAAGAAAAGGTACTGCAGATTT AGAGGAGTTTGTTTTGATACTGGTTTTCCTGCTTACTTTCTGTGCTAGTCTTTGCTTGTG GAAAGAGATGAGTTTTATTCACTGGGTTTCTTACTTGCAGAATAAAAGTTTGAGATTTTA AATAAAAAGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 288-447, - strand, RNAz p=0.808397 | |
| 307-447, - strand, RNAz p=0.994549 | |
| 758-875, - strand, RNAz p=0.801431 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 288-447, - strand, RNAz p=0.808397 | |
| 307-447, - strand, RNAz p=0.994549 | |
| 758-875, - strand, RNAz p=0.801431 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 57-199, gnl|bosTau2|chr19 (19747767-19747625) | |
| 57-199, gnl|Hg17|chr17 (6602131-6602273) | |
| 57-199, gnl|Mm7|chr11 (72384900-72385042) | |
| 249-447, gnl|bosTau2|chr19 (19746446-19746248) | |
| 249-447, gnl|canFam2|chr5 (33628160-33628000) | |
| 249-447, gnl|dasNov1|scaffold_130771 (2646-2513) | |
| 249-447, gnl|hg17|chr17 (6604409-6604571) | |
| 249-447, gnl|Hg17|chr17 (6604447-6604645) | |
| 249-447, gnl|loxAfr1|scaffold_20241 (38-202) | |
| 249-447, gnl|mm7|chr11 (72386233-72386362) | |
| 249-447, gnl|Mm7|chr11 (72386238-72386436) | |
| 249-447, gnl|oryCun1|scaffold_90264 (1690-1511) | |
| 249-447, gnl|panTro1|chr19_random (45184337-45184179) | |
| 249-447, gnl|rheMac2|chr16 (6469463-6469621) | |
| 249-447, gnl|rn3|chr10 (59202655-59202784) | |
| 249-447, gnl|tetNig1|chrUn_random (81234165-81234303) | |
| 532-875, gnl|bosTau2|chr19 (19740772-19740429) | |
| 532-875, gnl|canFam2|chr5 (33621310-33620598) | |
| 532-875, gnl|dasNov1|scaffold_48892 (2247-1615) | |
| 532-875, gnl|echTel1|scaffold_111920 (452-1109) | |
| 532-875, gnl|hg17|chr17 (6614568-6615250) | |
| 532-875, gnl|Hg17|chr17 (6614685-6615028) | |
| 532-875, gnl|loxAfr1|scaffold_20241 (5325-6001) | |
| 532-875, gnl|mm7|chr11 (72389879-72390681) | |
| 532-875, gnl|Mm7|chr11 (72390180-72390499) | |
| 532-875, gnl|oryCun1|scaffold_149933 (2694-2114) | |
| 532-875, gnl|panTro1|chr19_random (45174181-45173503) | |
| 532-875, gnl|rheMac2|chr16 (6479243-6479923) | |
| 532-875, gnl|rn3|chr10 (59206615-59207212) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 57-199, gnl|bosTau2|chr19 (19747767-19747625) | |
| 57-199, gnl|Hg17|chr17 (6602131-6602273) | |
| 57-199, gnl|Mm7|chr11 (72384900-72385042) | |
| 249-447, gnl|bosTau2|chr19 (19746446-19746248) | |
| 249-447, gnl|canFam2|chr5 (33628160-33628000) | |
| 249-447, gnl|dasNov1|scaffold_130771 (2646-2513) | |
| 249-447, gnl|hg17|chr17 (6604409-6604571) | |
| 249-447, gnl|Hg17|chr17 (6604447-6604645) | |
| 249-447, gnl|loxAfr1|scaffold_20241 (38-202) | |
| 249-447, gnl|mm7|chr11 (72386233-72386362) | |
| 249-447, gnl|Mm7|chr11 (72386238-72386436) | |
| 249-447, gnl|oryCun1|scaffold_90264 (1690-1511) | |
| 249-447, gnl|panTro1|chr19_random (45184337-45184179) | |
| 249-447, gnl|rheMac2|chr16 (6469463-6469621) | |
| 249-447, gnl|rn3|chr10 (59202655-59202784) | |
| 249-447, gnl|tetNig1|chrUn_random (81234165-81234303) | |
| 532-875, gnl|bosTau2|chr19 (19740772-19740429) | |
| 532-875, gnl|canFam2|chr5 (33621310-33620598) | |
| 532-875, gnl|dasNov1|scaffold_48892 (2247-1615) | |
| 532-875, gnl|echTel1|scaffold_111920 (452-1109) | |
| 532-875, gnl|hg17|chr17 (6614568-6615250) | |
| 532-875, gnl|Hg17|chr17 (6614685-6615028) | |
| 532-875, gnl|loxAfr1|scaffold_20241 (5325-6001) | |
| 532-875, gnl|mm7|chr11 (72389879-72390681) | |
| 532-875, gnl|Mm7|chr11 (72390180-72390499) | |
| 532-875, gnl|oryCun1|scaffold_149933 (2694-2114) | |
| 532-875, gnl|panTro1|chr19_random (45174181-45173503) | |
| 532-875, gnl|rheMac2|chr16 (6479243-6479923) | |
| 532-875, gnl|rn3|chr10 (59206615-59207212) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cag (0.453583) | |
| clu (0.358938) | |
| nje (0.33184) | |
| nmm (0.132802) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.453583) | |
| clu (0.358938) | |
| nje (0.33184) | |
| nmm (0.132802) | |
| cty (0.10408) |