Ss1.1-Liv1-LVR010104G09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGATGGCGGCCTCGGCGGGGCTGTTCTTGCGGTTGCGGAGCGGGCTCTTGCAAGGCG CGCGGGGGCTGTGCGCGAGGCTCGCGACGGCGCCTCCCCGGGCCCCAGACCAGACTGCAG AGATCGGGAGCCGAGCAGGCACTAAGGTCCAGGTCCAGGGGCCACAGCAGCAGAGGAGCT CGGAGGGTCCCAGCTATGCCAAAAAAGTCGCACTCTGGCTTGCTGGGCTGCTCGGGGCTG GTGGGACCGTGAGCATCGTCTATATCTTCGGAAACAACTCTGTGGATGAAAATGGTGCCA AGATTCCTGATGAATTCGACAATGATCCAATTCTGGTACAGCAGTTGCGCCGGACATACA AATATTTCAAGGATTACAGACAGATGATCATCGAGCCCACCAGCCCCTGCCTTCTCCCAG ACCCCCTGCGGGAGCCATACTACCAGCCGCCGTACACACTGGTCCTGGAGCTCACGGGCG TCCTCTTGCACCCTGAGTGGTCGCTGGCCACTGGCTGGAGGTTTAAGAAGCGTCCAGGCA TCGAGACCTTATTTCAGCAGCTCGCCCCTTTATACGAAATCGTCATCTTTACGTCGGAGA CTGGCATGACTGCGTTTCCCCTCATCGACAGCGTGGACCCCCACGGCTTCATCTCCTACC GCCTGTTCCGGGATGCCACGAGATACATGGATGGACACCACGTTAAGGACATTTCATGTC TGAATCGGGACCCAGCCCGGGTGGTAGTCGTGGACTGCAAGAAAGAAGCCTTCCGCCTAC AGCCCTACAACGGCGTCGCCCTGCGGCCCTGGGATGGCAACTCCGACGACCGAGTCTTAT TGGACCTGTCTGCCTTCCTCAAGACCATTGCTTTGAACGGTGTGGAGGATGTCCGAACCG TGCTGGAGCACTACGCCCTGGAGGAGGACCCTCTGGAGGCTTTCAAACAGCGGCAGAGCC GGCTAGAGCAGGAGGAACAGCAGCGCCTGGCTGAGCTCTCCAAGTCTAGCAAGCAGAACC TCTTCTTTGGCTCCCTCACCAGCCGCTTGTGGCCTCGCTCCAAACAGCCCTGACCTTTGG GCCTCCTCAAACTCAGTGCCTGGGCTCTGGGCCCCAGGCCCAGGGCTCCCAGATCACAGC TTGGGCAACTACATGGCCAATAAAGTTCCTCCCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGATGGCGGCCTCGGCGGGGCTGTTCTTGCGGTTGCGGAGCGGGCTCTTGCAAGGCG CGCGGGGGCTGTGCGCGAGGCTCGCGACGGCGCCTCCCCGGGCCCCAGACCAGACTGCAG AGATCGGGAGCCGAGCAGGCACTAAGGTCCAGGTCCAGGGGCCACAGCAGCAGAGGAGCT CGGAGGGTCCCAGCTATGCCAAAAAAGTCGCACTCTGGCTTGCTGGGCTGCTCGGGGCTG GTGGGACCGTGAGCATCGTCTATATCTTCGGAAACAACTCTGTGGATGAAAATGGTGCCA AGATTCCTGATGAATTCGACAATGATCCAATTCTGGTACAGCAGTTGCGCCGGACATACA AATATTTCAAGGATTACAGACAGATGATCATCGAGCCCACCAGCCCCTGCCTTCTCCCAG ACCCCCTGCGGGAGCCATACTACCAGCCGCCGTACACACTGGTCCTGGAGCTCACGGGCG TCCTCTTGCACCCTGAGTGGTCGCTGGCCACTGGCTGGAGGTTTAAGAAGCGTCCAGGCA TCGAGACCTTATTTCAGCAGCTCGCCCCTTTATACGAAATCGTCATCTTTACGTCGGAGA CTGGCATGACTGCGTTTCCCCTCATCGACAGCGTGGACCCCCACGGCTTCATCTCCTACC GCCTGTTCCGGGATGCCACGAGATACATGGATGGACACCACGTTAAGGACATTTCATGTC TGAATCGGGACCCAGCCCGGGTGGTAGTCGTGGACTGCAAGAAAGAAGCCTTCCGCCTAC AGCCCTACAACGGCGTCGCCCTGCGGCCCTGGGATGGCAACTCCGACGACCGAGTCTTAT TGGACCTGTCTGCCTTCCTCAAGACCATTGCTTTGAACGGTGTGGAGGATGTCCGAACCG TGCTGGAGCACTACGCCCTGGAGGAGGACCCTCTGGAGGCTTTCAAACAGCGGCAGAGCC GGCTAGAGCAGGAGGAACAGCAGCGCCTGGCTGAGCTCTCCAAGTCTAGCAAGCAGAACC TCTTCTTTGGCTCCCTCACCAGCCGCTTGTGGCCTCGCTCCAAACAGCCCTGACCTTTGG GCCTCCTCAAACTCAGTGCCTGGGCTCTGGGCCCCAGGCCCAGGGCTCCCAGATCACAGC TTGGGCAACTACATGGCCAATAAAGTTCCTCCCAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 150-271, + strand, RNAz p=0.624144 | |
| 969-1176, - strand, RNAz p=0.801887 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 150-271, + strand, RNAz p=0.624144 | |
| 969-1176, - strand, RNAz p=0.801887 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 111-271, gnl|bosTau2|chr18 (43694445-43694285) | |
| 111-271, gnl|Hg17|chr19 (44664360-44664514) | |
| 111-271, gnl|Mm7|chr7 (25244920-25244766) | |
| 380-506, gnl|bosTau2|chr18 (43691733-43691607) | |
| 380-506, gnl|canFam2|chr1 (116661185-116661084) | |
| 380-506, gnl|danRer3|chr15 (8711903-8711992) | |
| 380-506, gnl|dasNov1|scaffold_90590 (2067-1967) | |
| 380-506, gnl|echTel1|scaffold_281720 (51753-51853) | |
| 380-506, gnl|galGal2|chrUn (154235635-154235518) | |
| 380-506, gnl|hg17|chr19 (44668156-44668256) | |
| 380-506, gnl|Hg17|chr19 (44668164-44668290) | |
| 380-506, gnl|mm7|chr7 (25242179-25242079) | |
| 380-506, gnl|Mm7|chr7 (25242169-25242043) | |
| 380-506, gnl|monDom2|scaffold_139 (1102622-1102722) | |
| 380-506, gnl|oryCun1|scaffold_59221 (997-1102) | |
| 380-506, gnl|panTro1|chr20 (41658348-41658448) | |
| 380-506, gnl|rheMac2|chr19 (45835378-45835478) | |
| 380-506, gnl|tetNig1|chrUn_random (135456938-135457039) | |
| 380-506, gnl|xenTro1|scaffold_423 (754581-754474) | |
| 698-864, gnl|bosTau2|chr18 (43690278-43690112) | |
| 698-864, gnl|Hg17|chr19 (44670531-44670697) | |
| 698-864, gnl|Mm7|chr7 (25240886-25240720) | |
| 969-1176, gnl|bosTau2|chr18 (43688607-43688400) | |
| 969-1176, gnl|Hg17|chr19 (44672196-44672397) | |
| 969-1176, gnl|Mm7|chr7 (25239931-25239728) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-271, gnl|bosTau2|chr18 (43694445-43694285) | |
| 111-271, gnl|Hg17|chr19 (44664360-44664514) | |
| 111-271, gnl|Mm7|chr7 (25244920-25244766) | |
| 380-506, gnl|bosTau2|chr18 (43691733-43691607) | |
| 380-506, gnl|canFam2|chr1 (116661185-116661084) | |
| 380-506, gnl|danRer3|chr15 (8711903-8711992) | |
| 380-506, gnl|dasNov1|scaffold_90590 (2067-1967) | |
| 380-506, gnl|echTel1|scaffold_281720 (51753-51853) | |
| 380-506, gnl|galGal2|chrUn (154235635-154235518) | |
| 380-506, gnl|hg17|chr19 (44668156-44668256) | |
| 380-506, gnl|Hg17|chr19 (44668164-44668290) | |
| 380-506, gnl|mm7|chr7 (25242179-25242079) | |
| 380-506, gnl|Mm7|chr7 (25242169-25242043) | |
| 380-506, gnl|monDom2|scaffold_139 (1102622-1102722) | |
| 380-506, gnl|oryCun1|scaffold_59221 (997-1102) | |
| 380-506, gnl|panTro1|chr20 (41658348-41658448) | |
| 380-506, gnl|rheMac2|chr19 (45835378-45835478) | |
| 380-506, gnl|tetNig1|chrUn_random (135456938-135457039) | |
| 380-506, gnl|xenTro1|scaffold_423 (754581-754474) | |
| 698-864, gnl|bosTau2|chr18 (43690278-43690112) | |
| 698-864, gnl|Hg17|chr19 (44670531-44670697) | |
| 698-864, gnl|Mm7|chr7 (25240886-25240720) | |
| 969-1176, gnl|bosTau2|chr18 (43688607-43688400) | |
| 969-1176, gnl|Hg17|chr19 (44672196-44672397) | |
| 969-1176, gnl|Mm7|chr7 (25239931-25239728) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| mas (0.210305) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) |