Ss1.1-Liv1-LVR010105B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCTTACCAGAATCCAAGATGGCGAGATCCAGGCAAAGGGGTCTCCAGACTGGAGCTCG GCCGCTGTTCTGCGCCTTGCTGCTGTCGCTCTTTCGGTTCGTTGGGGGCGACGGCGTGGG AGGCGACCCCGCGGCTGCTGGCTCCACGGGCTCCTCAGCAGCGCAGCCACATCGCCGTTT CGAGTACAAATACAGCTTCAAGGGACCGCACCTGGTGCAGAGCGACGGGACCGTGCCCTT CTGGGCCTACGCGGGGAATGCTATTCCAAGTTCAGATCAGATTCGAATAGCACCATCATT GAAAAGCCAAAGAGGATCAGTATGGACAAAGGCAAAAGCGGCCTTTGAGAACTGGGAAGT TGAAGTGACATTTCGAGTAACTGGAAGAGGTCGAATTGGAGCTGATGGCCTGGCAATTTG GTATACGGAAAATCAAGGCCTGGAGGGCCCTGTATTTGGATCAGCTGATATGTGGAATGG AGTTGGAATATTTTTTGATTCTTTTGACAATGATGGAAAGAAAAATAATCCTGCAATAGT AATCATAGGCAACAATGGACAAATCCAATATGACCATCAAAATGATGGTGCTAATCAAGC TTTAGCAAGTTGCCAGAGGGACTTTCGTAATAAACCCTATCCTATCCGGGCAAAGATTAT ATATTACCAGAAAACATTGACAGTAATGATCCATAATGGCTTCACACCAGATAAAAATGA TTATGAATTTTGCGCCAAGGTAGAAAATATGATTATTCCTGCACAGGGGCATTTTGGAAT ATCTGCTGCAACTGGAGGTCTTGCAGATGACCATGATGTCCTTTCTTTTCTGACTTTCCA ATTGACTGAGCCTGGGAAAGAGCCACCTACACCAGATAAAGAAATTTCTGAAAAAGAAAA AGAAAAGTACCAGGAGGAATTTGAACACTTTCAACAAGAATTGGATAAAAAAAAGGAGGA ATTCCAGAAGGACCACCCTGACCTTCAAGGGCATCCTGCTGATGAAATATTCGAGAGTAT AGGAGATCGTGAGCTGAGACAAATCTTTGAAGGGCAGAATCGTATCCATCTTGAAATCAA GCAGCTGAACCGACAGTTAGATATGATTCTTGATGAACAGAGAAGATATGTCTCTTCCTT GACAGAGGAGATTTCTAAAAGAGGAGCAGGAATCCCAGGGCAGCATGGACAGATCACTCA ACAGGAACTGGATACTGTTGTGAACACTCAGCATGAGATTCTGAGACAAGTAAATGAAAT GAAGAATTCCATGAGTGAAACTGTCAGACTGGTCAGTGGCATACAGCATCCTGGATCTGC AGGTGGCGTATATGAGACAACCCAGCACTTCAATGATATCAAAGAGCACCTCCACATAGT CAAGCGGGACATAGATCACTTAGTGCAGCGAAACATGCCATCAAATGAAAAGCCAAAATG CCCAGAACTACCACCATTTCCCTCATGTTTATCTACGGTGCACTTCGTCATATTTGTAGT TGTACAAACGATGTTATTCATTGGTTATGTCATGTATAGGAGTCAGCAAGAAGCAGCTGC CAAAAAATTCTTTTGACCACCATTTTCATATGTGTACATCATGTATGTATGTACAAAATG TCTTTTTGAGGGAATTTAAGTATTTAAATTGCTTTGTAGTCTAAATTATTAAATTTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCTTACCAGAATCCAAGATGGCGAGATCCAGGCAAAGGGGTCTCCAGACTGGAGCTCG GCCGCTGTTCTGCGCCTTGCTGCTGTCGCTCTTTCGGTTCGTTGGGGGCGACGGCGTGGG AGGCGACCCCGCGGCTGCTGGCTCCACGGGCTCCTCAGCAGCGCAGCCACATCGCCGTTT CGAGTACAAATACAGCTTCAAGGGACCGCACCTGGTGCAGAGCGACGGGACCGTGCCCTT CTGGGCCTACGCGGGGAATGCTATTCCAAGTTCAGATCAGATTCGAATAGCACCATCATT GAAAAGCCAAAGAGGATCAGTATGGACAAAGGCAAAAGCGGCCTTTGAGAACTGGGAAGT TGAAGTGACATTTCGAGTAACTGGAAGAGGTCGAATTGGAGCTGATGGCCTGGCAATTTG GTATACGGAAAATCAAGGCCTGGAGGGCCCTGTATTTGGATCAGCTGATATGTGGAATGG AGTTGGAATATTTTTTGATTCTTTTGACAATGATGGAAAGAAAAATAATCCTGCAATAGT AATCATAGGCAACAATGGACAAATCCAATATGACCATCAAAATGATGGTGCTAATCAAGC TTTAGCAAGTTGCCAGAGGGACTTTCGTAATAAACCCTATCCTATCCGGGCAAAGATTAT ATATTACCAGAAAACATTGACAGTAATGATCCATAATGGCTTCACACCAGATAAAAATGA TTATGAATTTTGCGCCAAGGTAGAAAATATGATTATTCCTGCACAGGGGCATTTTGGAAT ATCTGCTGCAACTGGAGGTCTTGCAGATGACCATGATGTCCTTTCTTTTCTGACTTTCCA ATTGACTGAGCCTGGGAAAGAGCCACCTACACCAGATAAAGAAATTTCTGAAAAAGAAAA AGAAAAGTACCAGGAGGAATTTGAACACTTTCAACAAGAATTGGATAAAAAAAAGGAGGA ATTCCAGAAGGACCACCCTGACCTTCAAGGGCATCCTGCTGATGAAATATTCGAGAGTAT AGGAGATCGTGAGCTGAGACAAATCTTTGAAGGGCAGAATCGTATCCATCTTGAAATCAA GCAGCTGAACCGACAGTTAGATATGATTCTTGATGAACAGAGAAGATATGTCTCTTCCTT GACAGAGGAGATTTCTAAAAGAGGAGCAGGAATCCCAGGGCAGCATGGACAGATCACTCA ACAGGAACTGGATACTGTTGTGAACACTCAGCATGAGATTCTGAGACAAGTAAATGAAAT GAAGAATTCCATGAGTGAAACTGTCAGACTGGTCAGTGGCATACAGCATCCTGGATCTGC AGGTGGCGTATATGAGACAACCCAGCACTTCAATGATATCAAAGAGCACCTCCACATAGT CAAGCGGGACATAGATCACTTAGTGCAGCGAAACATGCCATCAAATGAAAAGCCAAAATG CCCAGAACTACCACCATTTCCCTCATGTTTATCTACGGTGCACTTCGTCATATTTGTAGT TGTACAAACGATGTTATTCATTGGTTATGTCATGTATAGGAGTCAGCAAGAAGCAGCTGC CAAAAAATTCTTTTGACCACCATTTTCATATGTGTACATCATGTATGTATGTACAAAATG TCTTTTTGAGGGAATTTAAGTATTTAAATTGCTTTGTAGTCTAAATTATTAAATTTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 296-413, + strand, RNAz p=0.680829 | |
| 1037-1156, + strand, RNAz p=0.834204 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 296-413, + strand, RNAz p=0.680829 | |
| 1037-1156, + strand, RNAz p=0.834204 |
| Aligned organism(s): 77 entry(ies) | More info |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
| 258-413, gnl|bosTau2|chr24 (44158781-44158936) | |
| 258-413, gnl|Hg17|chr18 (55173870-55173715) | |
| 258-413, gnl|Mm7|chr18 (66393624-66393469) | |
| 683-806, gnl|bosTau2|chr24 (44164480-44164603) | |
| 683-806, gnl|canFam2|chr1 (19888357-19888193) | |
| 683-806, gnl|danRer3|chr16 (51440919-51441090) | |
| 683-806, gnl|echTel1|scaffold_253183 (4832-4668) | |
| 683-806, gnl|fr1|chrUn (112025953-112025794) | |
| 683-806, gnl|galGal2|chrUn (4631604-4631439) | |
| 683-806, gnl|hg17|chr18 (55167323-55167487) | |
| 683-806, gnl|Hg17|chr18 (55167448-55167325) | |
| 683-806, gnl|mm7|chr18 (66389687-66389852) | |
| 683-806, gnl|Mm7|chr18 (66389812-66389689) | |
| 683-806, gnl|monDom2|scaffold_20 (42313765-42313601) | |
| 683-806, gnl|oryCun1|scaffold_205391 (50616-50779) | |
| 683-806, gnl|panTro1|chr17 (52070801-52070965) | |
| 683-806, gnl|rheMac2|chr18 (52626146-52626310) | |
| 683-806, gnl|rn3|chr18 (62585301-62585137) | |
| 683-806, gnl|tetNig1|chr4 (3446414-3446554) | |
| 683-806, gnl|xenTro1|scaffold_206 (621238-621393) | |
| 866-997, gnl|bosTau2|chr24 (44166674-44166805) | |
| 866-997, gnl|canFam2|chr1 (19890761-19890619) | |
| 866-997, gnl|danRer3|chr16 (51439670-51439813) | |
| 866-997, gnl|echTel1|scaffold_318861 (1642-1500) | |
| 866-997, gnl|fr1|chrUn (112026706-112026564) | |
| 866-997, gnl|galGal2|chrUn (4632916-4632773) | |
| 866-997, gnl|hg17|chr18 (55164125-55164268) | |
| 866-997, gnl|Hg17|chr18 (55164263-55164132) | |
| 866-997, gnl|loxAfr1|scaffold_88816 (12500-12358) | |
| 866-997, gnl|mm7|chr18 (66387973-66388116) | |
| 866-997, gnl|Mm7|chr18 (66388111-66387980) | |
| 866-997, gnl|monDom2|scaffold_20 (42315947-42315804) | |
| 866-997, gnl|panTro1|chr17 (52067655-52067798) | |
| 866-997, gnl|rheMac2|chr18 (52623401-52623543) | |
| 866-997, gnl|rn3|chr18 (62586965-62586822) | |
| 866-997, gnl|tetNig1|chr4 (3445819-3445960) | |
| 866-997, gnl|xenTro1|scaffold_206 (619090-619232) | |
| 998-1192, gnl|bosTau2|chr24 (44168407-44168601) | |
| 998-1192, gnl|canFam2|chr1 (19892805-19892579) | |
| 998-1192, gnl|danRer3|chr16 (51436957-51437175) | |
| 998-1192, gnl|echTel1|scaffold_318861 (2943-2717) | |
| 998-1192, gnl|fr1|chrUn (112027009-112026811) | |
| 998-1192, gnl|galGal2|chrUn (4633405-4633180) | |
| 998-1192, gnl|hg17|chr18 (55156964-55157187) | |
| 998-1192, gnl|Hg17|chr18 (55157166-55156972) | |
| 998-1192, gnl|loxAfr1|scaffold_77957 (32629-32403) | |
| 998-1192, gnl|mm7|chr18 (66386391-66386609) | |
| 998-1192, gnl|Mm7|chr18 (66386592-66386398) | |
| 998-1192, gnl|monDom2|scaffold_20 (42321692-42321472) | |
| 998-1192, gnl|oryCun1|scaffold_205391 (47199-47425) | |
| 998-1192, gnl|panTro1|chr17 (52060492-52060715) | |
| 998-1192, gnl|rheMac2|chr18 (52616245-52616468) | |
| 998-1192, gnl|rn3|chr18 (62588741-62588519) | |
| 998-1192, gnl|tetNig1|chr4 (3445476-3445692) | |
| 998-1192, gnl|xenTro1|scaffold_206 (617627-617836) | |
| 1264-1417, gnl|bosTau2|chr24 (44171779-44171932) | |
| 1264-1417, gnl|canFam2|chr1 (19897822-19897629) | |
| 1264-1417, gnl|danRer3|chr16 (51423693-51423889) | |
| 1264-1417, gnl|dasNov1|scaffold_87229 (1323-1130) | |
| 1264-1417, gnl|echTel1|scaffold_318861 (5724-5532) | |
| 1264-1417, gnl|fr1|chrUn (112030131-112029939) | |
| 1264-1417, gnl|galGal2|chrUn (4638355-4638165) | |
| 1264-1417, gnl|hg17|chr18 (55151298-55151491) | |
| 1264-1417, gnl|Hg17|chr18 (55151456-55151303) | |
| 1264-1417, gnl|loxAfr1|scaffold_73331 (888-695) | |
| 1264-1417, gnl|mm7|chr18 (66382654-66382837) | |
| 1264-1417, gnl|Mm7|chr18 (66382809-66382659) | |
| 1264-1417, gnl|monDom2|scaffold_20 (42324462-42324270) | |
| 1264-1417, gnl|oryCun1|scaffold_205391 (37301-37494) | |
| 1264-1417, gnl|panTro1|chr17 (52054932-52055125) | |
| 1264-1417, gnl|rheMac2|chr18 (52608760-52608953) | |
| 1264-1417, gnl|rn3|chr18 (62592631-62592448) | |
| 1264-1417, gnl|tetNig1|chr4 (3442253-3442436) | |
| 1264-1417, gnl|xenTro1|scaffold_206 (612661-612841) | |
| 1537-1670, gnl|bosTau2|chr24 (44173997-44174128) | |
| 1537-1670, gnl|Hg17|chr18 (55149344-55149204) | |
| 1537-1670, gnl|Mm7|chr18 (66378794-66378655) |
| Aligned organism(s): 77 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 258-413, gnl|bosTau2|chr24 (44158781-44158936) | |
| 258-413, gnl|Hg17|chr18 (55173870-55173715) | |
| 258-413, gnl|Mm7|chr18 (66393624-66393469) | |
| 683-806, gnl|bosTau2|chr24 (44164480-44164603) | |
| 683-806, gnl|canFam2|chr1 (19888357-19888193) | |
| 683-806, gnl|danRer3|chr16 (51440919-51441090) | |
| 683-806, gnl|echTel1|scaffold_253183 (4832-4668) | |
| 683-806, gnl|fr1|chrUn (112025953-112025794) | |
| 683-806, gnl|galGal2|chrUn (4631604-4631439) | |
| 683-806, gnl|hg17|chr18 (55167323-55167487) | |
| 683-806, gnl|Hg17|chr18 (55167448-55167325) | |
| 683-806, gnl|mm7|chr18 (66389687-66389852) | |
| 683-806, gnl|Mm7|chr18 (66389812-66389689) | |
| 683-806, gnl|monDom2|scaffold_20 (42313765-42313601) | |
| 683-806, gnl|oryCun1|scaffold_205391 (50616-50779) | |
| 683-806, gnl|panTro1|chr17 (52070801-52070965) | |
| 683-806, gnl|rheMac2|chr18 (52626146-52626310) | |
| 683-806, gnl|rn3|chr18 (62585301-62585137) | |
| 683-806, gnl|tetNig1|chr4 (3446414-3446554) | |
| 683-806, gnl|xenTro1|scaffold_206 (621238-621393) | |
| 866-997, gnl|bosTau2|chr24 (44166674-44166805) | |
| 866-997, gnl|canFam2|chr1 (19890761-19890619) | |
| 866-997, gnl|danRer3|chr16 (51439670-51439813) | |
| 866-997, gnl|echTel1|scaffold_318861 (1642-1500) | |
| 866-997, gnl|fr1|chrUn (112026706-112026564) | |
| 866-997, gnl|galGal2|chrUn (4632916-4632773) | |
| 866-997, gnl|hg17|chr18 (55164125-55164268) | |
| 866-997, gnl|Hg17|chr18 (55164263-55164132) | |
| 866-997, gnl|loxAfr1|scaffold_88816 (12500-12358) | |
| 866-997, gnl|mm7|chr18 (66387973-66388116) | |
| 866-997, gnl|Mm7|chr18 (66388111-66387980) | |
| 866-997, gnl|monDom2|scaffold_20 (42315947-42315804) | |
| 866-997, gnl|panTro1|chr17 (52067655-52067798) | |
| 866-997, gnl|rheMac2|chr18 (52623401-52623543) | |
| 866-997, gnl|rn3|chr18 (62586965-62586822) | |
| 866-997, gnl|tetNig1|chr4 (3445819-3445960) | |
| 866-997, gnl|xenTro1|scaffold_206 (619090-619232) | |
| 998-1192, gnl|bosTau2|chr24 (44168407-44168601) | |
| 998-1192, gnl|canFam2|chr1 (19892805-19892579) | |
| 998-1192, gnl|danRer3|chr16 (51436957-51437175) | |
| 998-1192, gnl|echTel1|scaffold_318861 (2943-2717) | |
| 998-1192, gnl|fr1|chrUn (112027009-112026811) | |
| 998-1192, gnl|galGal2|chrUn (4633405-4633180) | |
| 998-1192, gnl|hg17|chr18 (55156964-55157187) | |
| 998-1192, gnl|Hg17|chr18 (55157166-55156972) | |
| 998-1192, gnl|loxAfr1|scaffold_77957 (32629-32403) | |
| 998-1192, gnl|mm7|chr18 (66386391-66386609) | |
| 998-1192, gnl|Mm7|chr18 (66386592-66386398) | |
| 998-1192, gnl|monDom2|scaffold_20 (42321692-42321472) | |
| 998-1192, gnl|oryCun1|scaffold_205391 (47199-47425) | |
| 998-1192, gnl|panTro1|chr17 (52060492-52060715) | |
| 998-1192, gnl|rheMac2|chr18 (52616245-52616468) | |
| 998-1192, gnl|rn3|chr18 (62588741-62588519) | |
| 998-1192, gnl|tetNig1|chr4 (3445476-3445692) | |
| 998-1192, gnl|xenTro1|scaffold_206 (617627-617836) | |
| 1264-1417, gnl|bosTau2|chr24 (44171779-44171932) | |
| 1264-1417, gnl|canFam2|chr1 (19897822-19897629) | |
| 1264-1417, gnl|danRer3|chr16 (51423693-51423889) | |
| 1264-1417, gnl|dasNov1|scaffold_87229 (1323-1130) | |
| 1264-1417, gnl|echTel1|scaffold_318861 (5724-5532) | |
| 1264-1417, gnl|fr1|chrUn (112030131-112029939) | |
| 1264-1417, gnl|galGal2|chrUn (4638355-4638165) | |
| 1264-1417, gnl|hg17|chr18 (55151298-55151491) | |
| 1264-1417, gnl|Hg17|chr18 (55151456-55151303) | |
| 1264-1417, gnl|loxAfr1|scaffold_73331 (888-695) | |
| 1264-1417, gnl|mm7|chr18 (66382654-66382837) | |
| 1264-1417, gnl|Mm7|chr18 (66382809-66382659) | |
| 1264-1417, gnl|monDom2|scaffold_20 (42324462-42324270) | |
| 1264-1417, gnl|oryCun1|scaffold_205391 (37301-37494) | |
| 1264-1417, gnl|panTro1|chr17 (52054932-52055125) | |
| 1264-1417, gnl|rheMac2|chr18 (52608760-52608953) | |
| 1264-1417, gnl|rn3|chr18 (62592631-62592448) | |
| 1264-1417, gnl|tetNig1|chr4 (3442253-3442436) | |
| 1264-1417, gnl|xenTro1|scaffold_206 (612661-612841) | |
| 1537-1670, gnl|bosTau2|chr24 (44173997-44174128) | |
| 1537-1670, gnl|Hg17|chr18 (55149344-55149204) | |
| 1537-1670, gnl|Mm7|chr18 (66378794-66378655) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| pro (0.512033) | |
| lun (0.300978) | |
| tes (0.207814) | |
| mga (0.160205) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| lun (0.300978) | |
| tes (0.207814) | |
| mga (0.160205) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| pgl (0.118483) | |
| med (0.116252) |