Ss1.1-Liv1-LVR010105F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGCGCACGCAGCTTCATCCCCTTCCCAGCCCTTTCTCTTCCCGGTTTCCCTGTCAGCC TGCGGGTCGGGTCTGGCGGCTGCTTCCGGTAGGAGCGCGGTGCAGGGCAAGTCGGTCTCG GCTCCTCGTCATGTCCTACGGTCCCCTAGACATGTACCGGAACCCGGGGGCCTCGGGGCC CCCGCTCCGGGACTTCAACAGCATCATCCAGACGTGCAGTGGCAACATCCAGCGGATCAG CCAAGCCACTGCTCAGATAAAGAATTTGATGAGCCAACTGGGAACTAAGCAGGATTCCAG CAAGTTACAGGAAAACCTGCAACAGTTACAACACTCTACAAATCAGCTTGCCAAGGAAAC AAATGAATTACTGAAGGAATTAGGGTCCTTGCCCCTTCCTTTATCTACTTCAGAACAGCG CCAGCAGAAACTTCAGAAGGAACGTCTCATGAATGACTTCTCTGCAGCCTTAAACAGTTT CCAGGCTGTGCAGAGAAGGGTGTCTGAAAAGGAAAAGGAGAGTATTGCCAGAGCAAGAGC TGGATCTCGTCTTTCTGCGGAGGAGAGGCAAAGAGAGGAACAGCTCGTCTCGTTTGACAG CCATGAGGAGTGGAACCAGATGCAGAGCCAGGAGGATGAGGTGGCCATCACCGAACAGGA TCTGGAACTCATTAAAGAGAGGGAAACAGCGATTCGGCAGCTAGAGGCTGACATTTTGGA TGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAGGGTGATCTAATTGA CAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCATGTAGAAAGAGCTACTGATCAGTT ACAGCGAGCTGCTTACTATCAGGTAAAAGCAGGTACCAAGGAAAGTCATTTTGTGCTGTA GACGTTGAGGGCCATCGGAGTACAGGGACACACTGAGAACAGCTCCAACCTTTTGCTTAG GCTTCAGCTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGCGCACGCAGCTTCATCCCCTTCCCAGCCCTTTCTCTTCCCGGTTTCCCTGTCAGCC TGCGGGTCGGGTCTGGCGGCTGCTTCCGGTAGGAGCGCGGTGCAGGGCAAGTCGGTCTCG GCTCCTCGTCATGTCCTACGGTCCCCTAGACATGTACCGGAACCCGGGGGCCTCGGGGCC CCCGCTCCGGGACTTCAACAGCATCATCCAGACGTGCAGTGGCAACATCCAGCGGATCAG CCAAGCCACTGCTCAGATAAAGAATTTGATGAGCCAACTGGGAACTAAGCAGGATTCCAG CAAGTTACAGGAAAACCTGCAACAGTTACAACACTCTACAAATCAGCTTGCCAAGGAAAC AAATGAATTACTGAAGGAATTAGGGTCCTTGCCCCTTCCTTTATCTACTTCAGAACAGCG CCAGCAGAAACTTCAGAAGGAACGTCTCATGAATGACTTCTCTGCAGCCTTAAACAGTTT CCAGGCTGTGCAGAGAAGGGTGTCTGAAAAGGAAAAGGAGAGTATTGCCAGAGCAAGAGC TGGATCTCGTCTTTCTGCGGAGGAGAGGCAAAGAGAGGAACAGCTCGTCTCGTTTGACAG CCATGAGGAGTGGAACCAGATGCAGAGCCAGGAGGATGAGGTGGCCATCACCGAACAGGA TCTGGAACTCATTAAAGAGAGGGAAACAGCGATTCGGCAGCTAGAGGCTGACATTTTGGA TGTCAATCAGATATTTAAAGATTTGGCCATGATGATCCATGACCAGGGTGATCTAATTGA CAGCATAGAAGCCAATGTGGAAAGCTCAGAGGTGCATGTAGAAAGAGCTACTGATCAGTT ACAGCGAGCTGCTTACTATCAGGTAAAAGCAGGTACCAAGGAAAGTCATTTTGTGCTGTA GACGTTGAGGGCCATCGGAGTACAGGGACACACTGAGAACAGCTCCAACCTTTTGCTTAG GCTTCAGCTGGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 416-557, + strand, RNAz p=0.600634 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 416-557, + strand, RNAz p=0.600634 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-251, gnl|bosTau2|chr2 (76144874-76145123) | |
| 1-251, gnl|canFam2|chr2 (75473105-75472832) | |
| 1-251, gnl|dasNov1|scaffold_4197 (52843-52601) | |
| 1-251, gnl|echTel1|scaffold_277667 (11809-11542) | |
| 1-251, gnl|hg17|chr1 (27783790-27784062) | |
| 1-251, gnl|Hg17|chr1 (27783831-27784081) | |
| 1-251, gnl|loxAfr1|scaffold_6554 (36280-36562) | |
| 1-251, gnl|mm7|chr4 (132262971-132262699) | |
| 1-251, gnl|Mm7|chr4 (132262927-132262678) | |
| 1-251, gnl|monDom2|scaffold_147 (213502-213788) | |
| 1-251, gnl|panTro1|chr1 (28473783-28474055) | |
| 1-251, gnl|rheMac2|chr1 (30466642-30466914) | |
| 1-251, gnl|rn3|chr5 (152271916-152272187) | |
| 416-557, gnl|bosTau2|chr2 (75985353-75985494) | |
| 416-557, gnl|canFam2|chr2 (75450871-75450716) | |
| 416-557, gnl|danRer3|chrUn (172103587-172103434) | |
| 416-557, gnl|dasNov1|scaffold_95403 (2357-2200) | |
| 416-557, gnl|echTel1|scaffold_316771 (57682-57522) | |
| 416-557, gnl|fr1|chrUn (71159765-71159917) | |
| 416-557, gnl|galGal2|chr23 (1358710-1358865) | |
| 416-557, gnl|hg17|chr1 (27812320-27812476) | |
| 416-557, gnl|Hg17|chr1 (27812328-27812469) | |
| 416-557, gnl|loxAfr1|scaffold_57726 (8893-9029) | |
| 416-557, gnl|mm7|chr4 (132241742-132241586) | |
| 416-557, gnl|Mm7|chr4 (132241732-132241591) | |
| 416-557, gnl|monDom2|scaffold_147 (238268-238424) | |
| 416-557, gnl|oryCun1|scaffold_184773 (15422-15267) | |
| 416-557, gnl|panTro1|chr1 (28502210-28502366) | |
| 416-557, gnl|rheMac2|chr1 (30495889-30496045) | |
| 416-557, gnl|rn3|chr5 (152291888-152292044) | |
| 416-557, gnl|tetNig1|chrUn_random (87762507-87762659) | |
| 416-557, gnl|xenTro1|scaffold_864 (345959-345797) | |
| 583-707, gnl|bosTau2|chr2 (75989248-75989370) | |
| 583-707, gnl|Hg17|chr1 (27822800-27822922) | |
| 583-707, gnl|Mm7|chr4 (132239098-132238976) | |
| 779-972, gnl|bosTau2|chr2 (75994455-75994643) | |
| 779-972, gnl|Hg17|chr1 (27830302-27830494) | |
| 779-972, gnl|Mm7|chr4 (132235816-132235623) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-251, gnl|bosTau2|chr2 (76144874-76145123) | |
| 1-251, gnl|canFam2|chr2 (75473105-75472832) | |
| 1-251, gnl|dasNov1|scaffold_4197 (52843-52601) | |
| 1-251, gnl|echTel1|scaffold_277667 (11809-11542) | |
| 1-251, gnl|hg17|chr1 (27783790-27784062) | |
| 1-251, gnl|Hg17|chr1 (27783831-27784081) | |
| 1-251, gnl|loxAfr1|scaffold_6554 (36280-36562) | |
| 1-251, gnl|mm7|chr4 (132262971-132262699) | |
| 1-251, gnl|Mm7|chr4 (132262927-132262678) | |
| 1-251, gnl|monDom2|scaffold_147 (213502-213788) | |
| 1-251, gnl|panTro1|chr1 (28473783-28474055) | |
| 1-251, gnl|rheMac2|chr1 (30466642-30466914) | |
| 1-251, gnl|rn3|chr5 (152271916-152272187) | |
| 416-557, gnl|bosTau2|chr2 (75985353-75985494) | |
| 416-557, gnl|canFam2|chr2 (75450871-75450716) | |
| 416-557, gnl|danRer3|chrUn (172103587-172103434) | |
| 416-557, gnl|dasNov1|scaffold_95403 (2357-2200) | |
| 416-557, gnl|echTel1|scaffold_316771 (57682-57522) | |
| 416-557, gnl|fr1|chrUn (71159765-71159917) | |
| 416-557, gnl|galGal2|chr23 (1358710-1358865) | |
| 416-557, gnl|hg17|chr1 (27812320-27812476) | |
| 416-557, gnl|Hg17|chr1 (27812328-27812469) | |
| 416-557, gnl|loxAfr1|scaffold_57726 (8893-9029) | |
| 416-557, gnl|mm7|chr4 (132241742-132241586) | |
| 416-557, gnl|Mm7|chr4 (132241732-132241591) | |
| 416-557, gnl|monDom2|scaffold_147 (238268-238424) | |
| 416-557, gnl|oryCun1|scaffold_184773 (15422-15267) | |
| 416-557, gnl|panTro1|chr1 (28502210-28502366) | |
| 416-557, gnl|rheMac2|chr1 (30495889-30496045) | |
| 416-557, gnl|rn3|chr5 (152291888-152292044) | |
| 416-557, gnl|tetNig1|chrUn_random (87762507-87762659) | |
| 416-557, gnl|xenTro1|scaffold_864 (345959-345797) | |
| 583-707, gnl|bosTau2|chr2 (75989248-75989370) | |
| 583-707, gnl|Hg17|chr1 (27822800-27822922) | |
| 583-707, gnl|Mm7|chr4 (132239098-132238976) | |
| 779-972, gnl|bosTau2|chr2 (75994455-75994643) | |
| 779-972, gnl|Hg17|chr1 (27830302-27830494) | |
| 779-972, gnl|Mm7|chr4 (132235816-132235623) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| pla (0.267344) | |
| hea (0.204499) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lyg (0.133103) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| hea (0.204499) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| lyg (0.133103) |