Ss1.1-Liv1-LVR010105G08.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGTTTAAGAAAATCTGTATATAAACTTCTCCGCCGTGGTATCCAGAGCAAGGCATGG TTTTCACTTTTTAACAAAATGAGGTTACTCAATGCAGTGCCGCTTTTCATCCTTTTGATC ACATTGCAGTGTTCCCGTGCTGTGAGTCCCACAGGCTGTGACGATGCTGAGCCTGTGGCC AGAAAAGCTCTAGACCTGATCAATAAAGGACGATGGGACGGCTACCTTTTCGAGTTGCTG CAGGTTGCTGATGCCCACTTGGACAAATCGGAATCTACCGCTGTCTATTATTTAGTCTTG CATGTAAAAGAATCAGACTGTCCAGTCCTATCCAGGAAGCACTGGGATGACTGTGAGCCA GCTGTTTCCACACGTCCATCTGATATAGTTATTGGACAATGTAAGGTAATAGCTACAACA TGTTTGGATGGATCTCAGGATCTTAGAGTGAATGGCTTTAATTGCACCACAAGTTCTGCC TCTTCAGTACTGGCCAATACGAAAGACAGCCCAGTACTCATCGATTTCTTTGAGGATACG GAGCCCTACAGAAAAGAAGCTAACCAAACCTTGGAAAAGTACAAAAGGGAGAACAGTGAC TTTGCCTCTTTCCGAGTGGACAAAGTGGAGAGGGTTGCAAGAGTGAGAGGAGGGGAAAGA ACGAATTACTACGTGGATTTCTCTGTGAGGAACTGCTCCAGTCGCTGGCGCTCTCCTACC TTTGGATTCTGTAGAGCAGATTTCATCAATGATGCAGAAGCCTCTGACTTGGAAAACCCA GAAGATATTGTCATAAACTGTGAAGTCTTCAACTTCAAGGATCATAGAAACATCAGTGGT GGGCAGAAGCATTTGGGCCATCGCTTCCACTCTGGCGAGCATGAGCATTCTCCTGCTGGC AGGCCTCCACATAAGCCCGGTAGATCTCGAGATCACCATGATTCCCACAAGCCACATAAA TTTGGGTGCCCACCTCCTCTAGGAGACAAAAGTCACTCAGACAGTCCACCATTTCAAGCA GAAGCTTCTCCATCATTGGCCTCTTTAGGCACCAATGGGGTCCATGGACCCTCAGATAAT CATAGTTCCAGTGAGCATCATCTCCCAGGACATCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACGCCATCCCCATGGGCCCCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACACCATCCCCATGGGCCCCCTCCTCATGGACACCATCCCCATGGG CCCCCTCCTCATGGACACCATCCCCATGGACCCCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACACCATCCCCATGGACCCCCTCCTCATAGACACCATCCCCATGGC CATGATTTCCATGACTATGGACCCTGTGACCCACCACCCCATAGCCAAGATCCCCAAGAC CACCATCGCTGGGGCCATGGCCCACCACCTAGGCACTCAGAAGAAAGAGGTCCAGGTAAA AAACACTTTCCCTTCCATGGGAGAGAGATTGGATATGTTCACCGACTCCCACCATTAAAG AAAGGTGAGGTTCTTCCTCTTCCCGAAGCCAATTTTCCCAGTTTCTTGTTGCCACACCAC AAGCCCCTACAGCCAGAGATTCAGCCCTTCCCTCAATCAGCCTCTGAATCATGTCCAGGG ACATTCAGGGGTGAGTTTTCACATCTGTCAAAGTTTTTTGCACATACATTTCCAAAATAA AATCTCATTGCCTTGTTGGGGAAAAATGGATCACGTCCTGAAGTTGAACCATAAATAAAA TGTGATCAGTAATAAATGCAAAATTACAAGTTAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGTTTAAGAAAATCTGTATATAAACTTCTCCGCCGTGGTATCCAGAGCAAGGCATGG TTTTCACTTTTTAACAAAATGAGGTTACTCAATGCAGTGCCGCTTTTCATCCTTTTGATC ACATTGCAGTGTTCCCGTGCTGTGAGTCCCACAGGCTGTGACGATGCTGAGCCTGTGGCC AGAAAAGCTCTAGACCTGATCAATAAAGGACGATGGGACGGCTACCTTTTCGAGTTGCTG CAGGTTGCTGATGCCCACTTGGACAAATCGGAATCTACCGCTGTCTATTATTTAGTCTTG CATGTAAAAGAATCAGACTGTCCAGTCCTATCCAGGAAGCACTGGGATGACTGTGAGCCA GCTGTTTCCACACGTCCATCTGATATAGTTATTGGACAATGTAAGGTAATAGCTACAACA TGTTTGGATGGATCTCAGGATCTTAGAGTGAATGGCTTTAATTGCACCACAAGTTCTGCC TCTTCAGTACTGGCCAATACGAAAGACAGCCCAGTACTCATCGATTTCTTTGAGGATACG GAGCCCTACAGAAAAGAAGCTAACCAAACCTTGGAAAAGTACAAAAGGGAGAACAGTGAC TTTGCCTCTTTCCGAGTGGACAAAGTGGAGAGGGTTGCAAGAGTGAGAGGAGGGGAAAGA ACGAATTACTACGTGGATTTCTCTGTGAGGAACTGCTCCAGTCGCTGGCGCTCTCCTACC TTTGGATTCTGTAGAGCAGATTTCATCAATGATGCAGAAGCCTCTGACTTGGAAAACCCA GAAGATATTGTCATAAACTGTGAAGTCTTCAACTTCAAGGATCATAGAAACATCAGTGGT GGGCAGAAGCATTTGGGCCATCGCTTCCACTCTGGCGAGCATGAGCATTCTCCTGCTGGC AGGCCTCCACATAAGCCCGGTAGATCTCGAGATCACCATGATTCCCACAAGCCACATAAA TTTGGGTGCCCACCTCCTCTAGGAGACAAAAGTCACTCAGACAGTCCACCATTTCAAGCA GAAGCTTCTCCATCATTGGCCTCTTTAGGCACCAATGGGGTCCATGGACCCTCAGATAAT CATAGTTCCAGTGAGCATCATCTCCCAGGACATCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACGCCATCCCCATGGGCCCCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACACCATCCCCATGGGCCCCCTCCTCATGGACACCATCCCCATGGG CCCCCTCCTCATGGACACCATCCCCATGGACCCCCTCCTCATGGACGCCATCCCCATGGA CCCCCTCCTCATGGACACCATCCCCATGGACCCCCTCCTCATAGACACCATCCCCATGGC CATGATTTCCATGACTATGGACCCTGTGACCCACCACCCCATAGCCAAGATCCCCAAGAC CACCATCGCTGGGGCCATGGCCCACCACCTAGGCACTCAGAAGAAAGAGGTCCAGGTAAA AAACACTTTCCCTTCCATGGGAGAGAGATTGGATATGTTCACCGACTCCCACCATTAAAG AAAGGTGAGGTTCTTCCTCTTCCCGAAGCCAATTTTCCCAGTTTCTTGTTGCCACACCAC AAGCCCCTACAGCCAGAGATTCAGCCCTTCCCTCAATCAGCCTCTGAATCATGTCCAGGG ACATTCAGGGGTGAGTTTTCACATCTGTCAAAGTTTTTTGCACATACATTTCCAAAATAA AATCTCATTGCCTTGTTGGGGAAAAATGGATCACGTCCTGAAGTTGAACCATAAATAAAA TGTGATCAGTAATAAATGCAAAATTACAAGTTAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1282-1401, - strand, RNAz p=0.990534 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1282-1401, - strand, RNAz p=0.990534 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-262, gnl|bosTau2|chr1 (54908391-54908651) | |
| 1-262, gnl|canFam2|chr34 (22284730-22285137) | |
| 1-262, gnl|dasNov1|scaffold_19201 (41945-42326) | |
| 1-262, gnl|echTel1|scaffold_288585 (5098-4707) | |
| 1-262, gnl|hg17|chr3 (187866323-187866684) | |
| 1-262, gnl|Hg17|chr3 (187866457-187866697) | |
| 1-262, gnl|loxAfr1|scaffold_24691 (1702-1328) | |
| 1-262, gnl|mm7|chr16 (22613626-22613972) | |
| 1-262, gnl|Mm7|chr16 (22613751-22613985) | |
| 1-262, gnl|monDom2|scaffold_69 (7384265-7383874) | |
| 1-262, gnl|panTro1|chr2 (191957775-191958136) | |
| 1-262, gnl|rheMac2|chr2 (99968137-99967776) | |
| 1-262, gnl|rn3|chr11 (80321903-80321559) | |
| 270-389, gnl|bosTau2|chr1 (49453285-49453404) | |
| 270-389, gnl|canFam2|chr34 (22286781-22287002) | |
| 270-389, gnl|echTel1|scaffold_288585 (2672-2457) | |
| 270-389, gnl|hg17|chr3 (187869411-187869624) | |
| 270-389, gnl|Hg17|chr3 (187869425-187869544) | |
| 270-389, gnl|mm7|chr16 (22616298-22616510) | |
| 270-389, gnl|Mm7|chr16 (22616313-22616426) | |
| 270-389, gnl|monDom2|scaffold_69 (7380313-7380091) | |
| 270-389, gnl|oryCun1|scaffold_144202 (10254-10457) | |
| 270-389, gnl|panTro1|chr2 (191960890-191961103) | |
| 270-389, gnl|rheMac2|chr2 (99964973-99964755) | |
| 270-389, gnl|rn3|chr11 (80319626-80319420) | |
| 480-643, gnl|bosTau2|chr1 (49455694-49455857) | |
| 480-643, gnl|canFam2|chr34 (22288914-22289300) | |
| 480-643, gnl|dasNov1|scaffold_19201 (45732-46096) | |
| 480-643, gnl|echTel1|scaffold_288585 (445-64) | |
| 480-643, gnl|hg17|chr3 (187871991-187872361) | |
| 480-643, gnl|Hg17|chr3 (187872115-187872278) | |
| 480-643, gnl|loxAfr1|scaffold_46905 (16715-16417) | |
| 480-643, gnl|mm7|chr16 (22618652-22619014) | |
| 480-643, gnl|Mm7|chr16 (22618795-22618958) | |
| 480-643, gnl|monDom2|scaffold_69 (7374919-7374552) | |
| 480-643, gnl|oryCun1|scaffold_144202 (12565-12928) | |
| 480-643, gnl|panTro1|chr2 (191963469-191963839) | |
| 480-643, gnl|rheMac2|chr2 (99962369-99961999) | |
| 480-643, gnl|rn3|chr11 (80316920-80316557) | |
| 720-820, gnl|bosTau2|chr1 (49457610-49457710) | |
| 720-820, gnl|canFam2|chr34 (22292294-22292460) | |
| 720-820, gnl|dasNov1|scaffold_19201 (49008-49181) | |
| 720-820, gnl|echTel1|scaffold_281695 (3115-3318) | |
| 720-820, gnl|hg17|chr3 (187875542-187875688) | |
| 720-820, gnl|Hg17|chr3 (187875582-187875682) | |
| 720-820, gnl|loxAfr1|scaffold_46905 (12399-12211) | |
| 720-820, gnl|mm7|chr16 (22621883-22622023) | |
| 720-820, gnl|Mm7|chr16 (22621917-22622017) | |
| 720-820, gnl|monDom2|scaffold_69 (7372933-7372784) | |
| 720-820, gnl|panTro1|chr2 (191967004-191967150) | |
| 720-820, gnl|rheMac2|chr2 (99958306-99958159) | |
| 720-820, gnl|rn3|chr11 (80308437-80308297) | |
| 1178-1833, gnl|bosTau2|chr1 (49459233-49459891) | |
| 1178-1833, gnl|Hg17|chr3 (187877833-187878462) | |
| 1178-1833, gnl|Mm7|chr16 (22623758-22624419) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-262, gnl|bosTau2|chr1 (54908391-54908651) | |
| 1-262, gnl|canFam2|chr34 (22284730-22285137) | |
| 1-262, gnl|dasNov1|scaffold_19201 (41945-42326) | |
| 1-262, gnl|echTel1|scaffold_288585 (5098-4707) | |
| 1-262, gnl|hg17|chr3 (187866323-187866684) | |
| 1-262, gnl|Hg17|chr3 (187866457-187866697) | |
| 1-262, gnl|loxAfr1|scaffold_24691 (1702-1328) | |
| 1-262, gnl|mm7|chr16 (22613626-22613972) | |
| 1-262, gnl|Mm7|chr16 (22613751-22613985) | |
| 1-262, gnl|monDom2|scaffold_69 (7384265-7383874) | |
| 1-262, gnl|panTro1|chr2 (191957775-191958136) | |
| 1-262, gnl|rheMac2|chr2 (99968137-99967776) | |
| 1-262, gnl|rn3|chr11 (80321903-80321559) | |
| 270-389, gnl|bosTau2|chr1 (49453285-49453404) | |
| 270-389, gnl|canFam2|chr34 (22286781-22287002) | |
| 270-389, gnl|echTel1|scaffold_288585 (2672-2457) | |
| 270-389, gnl|hg17|chr3 (187869411-187869624) | |
| 270-389, gnl|Hg17|chr3 (187869425-187869544) | |
| 270-389, gnl|mm7|chr16 (22616298-22616510) | |
| 270-389, gnl|Mm7|chr16 (22616313-22616426) | |
| 270-389, gnl|monDom2|scaffold_69 (7380313-7380091) | |
| 270-389, gnl|oryCun1|scaffold_144202 (10254-10457) | |
| 270-389, gnl|panTro1|chr2 (191960890-191961103) | |
| 270-389, gnl|rheMac2|chr2 (99964973-99964755) | |
| 270-389, gnl|rn3|chr11 (80319626-80319420) | |
| 480-643, gnl|bosTau2|chr1 (49455694-49455857) | |
| 480-643, gnl|canFam2|chr34 (22288914-22289300) | |
| 480-643, gnl|dasNov1|scaffold_19201 (45732-46096) | |
| 480-643, gnl|echTel1|scaffold_288585 (445-64) | |
| 480-643, gnl|hg17|chr3 (187871991-187872361) | |
| 480-643, gnl|Hg17|chr3 (187872115-187872278) | |
| 480-643, gnl|loxAfr1|scaffold_46905 (16715-16417) | |
| 480-643, gnl|mm7|chr16 (22618652-22619014) | |
| 480-643, gnl|Mm7|chr16 (22618795-22618958) | |
| 480-643, gnl|monDom2|scaffold_69 (7374919-7374552) | |
| 480-643, gnl|oryCun1|scaffold_144202 (12565-12928) | |
| 480-643, gnl|panTro1|chr2 (191963469-191963839) | |
| 480-643, gnl|rheMac2|chr2 (99962369-99961999) | |
| 480-643, gnl|rn3|chr11 (80316920-80316557) | |
| 720-820, gnl|bosTau2|chr1 (49457610-49457710) | |
| 720-820, gnl|canFam2|chr34 (22292294-22292460) | |
| 720-820, gnl|dasNov1|scaffold_19201 (49008-49181) | |
| 720-820, gnl|echTel1|scaffold_281695 (3115-3318) | |
| 720-820, gnl|hg17|chr3 (187875542-187875688) | |
| 720-820, gnl|Hg17|chr3 (187875582-187875682) | |
| 720-820, gnl|loxAfr1|scaffold_46905 (12399-12211) | |
| 720-820, gnl|mm7|chr16 (22621883-22622023) | |
| 720-820, gnl|Mm7|chr16 (22621917-22622017) | |
| 720-820, gnl|monDom2|scaffold_69 (7372933-7372784) | |
| 720-820, gnl|panTro1|chr2 (191967004-191967150) | |
| 720-820, gnl|rheMac2|chr2 (99958306-99958159) | |
| 720-820, gnl|rn3|chr11 (80308437-80308297) | |
| 1178-1833, gnl|bosTau2|chr1 (49459233-49459891) | |
| 1178-1833, gnl|Hg17|chr3 (187877833-187878462) | |
| 1178-1833, gnl|Mm7|chr16 (22623758-22624419) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (5.34841) | |
| fli (2.63745) | |
| eli (1.51814) |