Non-Coding RNA Search

Ss1.1-Liv1-LVR010106D09.5

Sequence:


               
               ACATTCTCCTGGGCTACGGTGGGGAACAGCAGGGCCGGCACGGGGGCAGGATGCTGCAGC
TGCTGGTTTCTGGCTGTGTCCGAGGCCTAAGGGCCGGCGTGGGCGTGCGGGGGCTGCTTC
CCCTGCACCCAGCGAGTCCTGCTACAGGGCTTGGCAACCCAGGCCTCAGCCCGAGCCGCC
AAGCCTCCAACACTCCCCGGAACCAGCCTCCCAAAGCTGATTTCGTGGCCCGGTCAGTGG
GCATCTGTTCCATGATGCGGCTGCCAGTGCAGGCCTCCCCCGAGGGACTGGACGCTGCCT
TCATCGGGGTGCCCCTGGACATTGGGACCTCCAACCGGCCCGGGGCAAGATATGGACCCC
GACGGATCCGGGAGGAATCAGTGCTGCTTCGCCCGGCCAACCCCAGCACGGGAGCCCTCC
CCTTCCAGTCCCTCATGGTCGCAGACCTAGGAGATGTGAATGTCAACCTTTACAACCTTC
AGGACAGCTGCCGCCTCATTCGAGAGGCCTATCAGAAAATCGTGGCAGCTGGCTGTATCC
CTCTGACCTTGGGTGGAGATCACACCATCACATATCCCATATTGCAGGCGATGTCAGAAA
AGCACGGCCCCGTGGGGCTGGTGCATGTGGACGCGCACATGGACACGGCGGACAAGGCCC
TGGGGGAGAAGCTCTACCACGGGTCGCCCTTTCGCCGATGCGTGGAGGAGGGACTCTTGG
ACTGTAAGCGCGTGGTGCAGATTGGCATCCGGGGCTCTTCCCTGACCTTGGACACCTACA
GCTATAGCCGGAGCCAGGGCTTTCGGGTGGTCCTGGCTGAAGACTGCTGGCTGAAGTCAC
TGGTTCCTCTGATGGGGGAAGTGAGGCAGCAGATGGGAGGCAAACCCATTTATATCAGCT
TTGATATTGACAGCTTGGATCCCGCCTATGCCCCAGGGACGGGGACACCTGAAATTGCTG
GCCTGACCCCGAGTCAGGCTCTGGAGATCATCCGAGGTTGTCAAGGCCTGAACGTGGTGG
GTTGTGATCTTGTGGAAGTTTCGCCGCCATACGATCCTTTTGGAAACACGGCCCTCCTGG
CGGCTAACTTGCTGTTTGAGATGCTGTGTGTTCTCCCCAAAGTGACAGTCGTCTGAACAT
TGTGCTTTTCAAGATAAAACAACAGATTGCACGGCCACCAAATTCTCCAGAAGAATTTAA
GTGCAAGCCGTCTGTGTGCTGGAGAGTTTATGCCAATAAAACTTTGTTAAAGTGTCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTCTCCTGGGCTACGGTGGGGAACAGCAGGGCCGGCACGGGGGCAGGATGCTGCAGC
TGCTGGTTTCTGGCTGTGTCCGAGGCCTAAGGGCCGGCGTGGGCGTGCGGGGGCTGCTTC
CCCTGCACCCAGCGAGTCCTGCTACAGGGCTTGGCAACCCAGGCCTCAGCCCGAGCCGCC
AAGCCTCCAACACTCCCCGGAACCAGCCTCCCAAAGCTGATTTCGTGGCCCGGTCAGTGG
GCATCTGTTCCATGATGCGGCTGCCAGTGCAGGCCTCCCCCGAGGGACTGGACGCTGCCT
TCATCGGGGTGCCCCTGGACATTGGGACCTCCAACCGGCCCGGGGCAAGATATGGACCCC
GACGGATCCGGGAGGAATCAGTGCTGCTTCGCCCGGCCAACCCCAGCACGGGAGCCCTCC
CCTTCCAGTCCCTCATGGTCGCAGACCTAGGAGATGTGAATGTCAACCTTTACAACCTTC
AGGACAGCTGCCGCCTCATTCGAGAGGCCTATCAGAAAATCGTGGCAGCTGGCTGTATCC
CTCTGACCTTGGGTGGAGATCACACCATCACATATCCCATATTGCAGGCGATGTCAGAAA
AGCACGGCCCCGTGGGGCTGGTGCATGTGGACGCGCACATGGACACGGCGGACAAGGCCC
TGGGGGAGAAGCTCTACCACGGGTCGCCCTTTCGCCGATGCGTGGAGGAGGGACTCTTGG
ACTGTAAGCGCGTGGTGCAGATTGGCATCCGGGGCTCTTCCCTGACCTTGGACACCTACA
GCTATAGCCGGAGCCAGGGCTTTCGGGTGGTCCTGGCTGAAGACTGCTGGCTGAAGTCAC
TGGTTCCTCTGATGGGGGAAGTGAGGCAGCAGATGGGAGGCAAACCCATTTATATCAGCT
TTGATATTGACAGCTTGGATCCCGCCTATGCCCCAGGGACGGGGACACCTGAAATTGCTG
GCCTGACCCCGAGTCAGGCTCTGGAGATCATCCGAGGTTGTCAAGGCCTGAACGTGGTGG
GTTGTGATCTTGTGGAAGTTTCGCCGCCATACGATCCTTTTGGAAACACGGCCCTCCTGG
CGGCTAACTTGCTGTTTGAGATGCTGTGTGTTCTCCCCAAAGTGACAGTCGTCTGAACAT
TGTGCTTTTCAAGATAAAACAACAGATTGCACGGCCACCAAATTCTCCAGAAGAATTTAA
GTGCAAGCCGTCTGTGTGCTGGAGAGTTTATGCCAATAAAACTTTGTTAAAGTGTCAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18031951|gb|AAL24446.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18031951|gb|AAL24446.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-222, - strand, RNAz p=0.999566

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-222, - strand, RNAz p=0.999566

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-372, gnl|bosTau2|chr16 (38844932-38844574)
               

               
               12-372, gnl|Hg17|chr1 (15656867-15656471)
               

               
               12-372, gnl|Mm7|chr4 (141125223-141125567)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-372, gnl|bosTau2|chr16 (38844932-38844574)
               

               
               12-372, gnl|Hg17|chr1 (15656867-15656471)
               

               
               12-372, gnl|Mm7|chr4 (141125223-141125567)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fli (0.405762)
               

               
               eli (0.303628)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.405762)
               

               
               eli (0.303628)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)

	12-372, gnl\|bosTau2\|chr16 (38844932-38844574)
	12-372, gnl\|Hg17\|chr1 (15656867-15656471)
	12-372, gnl\|Mm7\|chr4 (141125223-141125567)

	fli (0.405762)
	eli (0.303628)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	cli (0.152812)