Non-Coding RNA Search

Ss1.1-Liv1-LVR010106H01.5

Sequence:


               
               AATTTCGCAGAAGTGTAGCGAACGTGGGTGGTTGGGAGGAAGAGAGGTGGGAGGTGGCAG
AGTTCAAAGAGTAGGGAACAGAGTGACACCCCCCGGATTACACAAACCCCCAAAGTCTGC
CAAAGAGTGAGGACAGATAGCGTTTGTGGAGCCTGGAAGCCAGGGAGTGCCGCGGTTAAA
GGAGCCACAGCCCTTTCGAGAGCCGGCGGGAGACGCAGAGGCTTTGAGGACCTTATCGAC
CATGGTGCGCTTGCCCTGCCCGTTGCTGCTGCTGCTGCCCCTGCTGCGTGTGTCTGCGGC
CACCCCGGAGCCCTGCCAAATAGACGACGAAGACGTCCGCTGCGTCTGCAACTTCACGCA
TCCGCAGCCGGACTGGTCCAGCGCCCTGCAGTGCGTGGCTGCCGTCGAGGTGGAGATCCG
CGGCGGCGGCCGGAGCCTGGAAGAGTTCCTTTTAAAGAGCGCCAGCGCCAACCCGAAGCA
GTACGCGGACATGCTCAAGGCGCTGCGCTTGCGGCGACTCACGGTGGGCGCTGCGCGGGT
TCCTGCTCAGATTCTGGCCCTGGTCCTGCATGCGCTCGGGTTCTCCCGCCTCAAGGAACT
GACGCTCGAGGACCTGGAGGTAACCGGCCAGGTACCGCCGCCGCTTCAGGAAACGCCGGG
ACCTGCGCTCACCACCCTCAGACTCCGTAATGTGTCGTGGGCCACCGGAGGTGCCTGGCT
CGGCGAACTGCAGCAGTGGCTCCAGCCAAGCCTCAAGGTACTGAAAGTGGCGCAAGCAAG
CTCGCTTGCCTTTCCGTGCGCCCAGCTTCGCGCCTTCCCGGCTCTCACCACCCTGGACCT
ATCTGACAATCCCGGGCTGGGCGAGCGCGGGCTGACTGCAGCTCTCTGTCCGCGCAAGTT
CCCGGCCCTCGAGGATCTGGCGCTGCGCAACGCGGGGATGGAGACACCCAGCGGCGTGTG
CGCGGCGCTGGCGGGGGCGGGCGTGCAACCCCACCGCCTGGACCTCAGTCACAACTCGCT
GCGCGCCACCGCCGCGGGCGCCCGGGAGTGTGTCTGGCCTGCCGCCCTGAGCTCTCTCAA
TTTGTCATTCGCTGAGCTGGAGCAAGTGCCTAAAGGACTGCCGCCCAAGCTCACCGTGCT
TGATCTCAGCTGCAACAAGCTGAACAGAGCGCCGCGGCCAGAGGAGCTGCCCGCCGTGGA
TGACCTGACCCTGGAAGGGAATCCCTATATGGATCCTGAAGCCCTCCAGCACCAGGAAGA
CCCGATGGCCTCTGGCGTGGTCCCACCCTGTGCGCGTTCCGCCTTGACCATGGGGGTGTC
GGGAACCCTGGCGCTGCTTCAGGGAGCCCGGGGCTTCGCCTAAGGCCCAAGGAAGGGGAA
TTACTGGCTCAGACTGCCGTGGCTCCGGGGGAGCCTCCTCAGGACAACTCAACCAACCAC
CCCTCTGCCCCACCTTCATTAAAATCTTGAACAACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCGCAGAAGTGTAGCGAACGTGGGTGGTTGGGAGGAAGAGAGGTGGGAGGTGGCAG
AGTTCAAAGAGTAGGGAACAGAGTGACACCCCCCGGATTACACAAACCCCCAAAGTCTGC
CAAAGAGTGAGGACAGATAGCGTTTGTGGAGCCTGGAAGCCAGGGAGTGCCGCGGTTAAA
GGAGCCACAGCCCTTTCGAGAGCCGGCGGGAGACGCAGAGGCTTTGAGGACCTTATCGAC
CATGGTGCGCTTGCCCTGCCCGTTGCTGCTGCTGCTGCCCCTGCTGCGTGTGTCTGCGGC
CACCCCGGAGCCCTGCCAAATAGACGACGAAGACGTCCGCTGCGTCTGCAACTTCACGCA
TCCGCAGCCGGACTGGTCCAGCGCCCTGCAGTGCGTGGCTGCCGTCGAGGTGGAGATCCG
CGGCGGCGGCCGGAGCCTGGAAGAGTTCCTTTTAAAGAGCGCCAGCGCCAACCCGAAGCA
GTACGCGGACATGCTCAAGGCGCTGCGCTTGCGGCGACTCACGGTGGGCGCTGCGCGGGT
TCCTGCTCAGATTCTGGCCCTGGTCCTGCATGCGCTCGGGTTCTCCCGCCTCAAGGAACT
GACGCTCGAGGACCTGGAGGTAACCGGCCAGGTACCGCCGCCGCTTCAGGAAACGCCGGG
ACCTGCGCTCACCACCCTCAGACTCCGTAATGTGTCGTGGGCCACCGGAGGTGCCTGGCT
CGGCGAACTGCAGCAGTGGCTCCAGCCAAGCCTCAAGGTACTGAAAGTGGCGCAAGCAAG
CTCGCTTGCCTTTCCGTGCGCCCAGCTTCGCGCCTTCCCGGCTCTCACCACCCTGGACCT
ATCTGACAATCCCGGGCTGGGCGAGCGCGGGCTGACTGCAGCTCTCTGTCCGCGCAAGTT
CCCGGCCCTCGAGGATCTGGCGCTGCGCAACGCGGGGATGGAGACACCCAGCGGCGTGTG
CGCGGCGCTGGCGGGGGCGGGCGTGCAACCCCACCGCCTGGACCTCAGTCACAACTCGCT
GCGCGCCACCGCCGCGGGCGCCCGGGAGTGTGTCTGGCCTGCCGCCCTGAGCTCTCTCAA
TTTGTCATTCGCTGAGCTGGAGCAAGTGCCTAAAGGACTGCCGCCCAAGCTCACCGTGCT
TGATCTCAGCTGCAACAAGCTGAACAGAGCGCCGCGGCCAGAGGAGCTGCCCGCCGTGGA
TGACCTGACCCTGGAAGGGAATCCCTATATGGATCCTGAAGCCCTCCAGCACCAGGAAGA
CCCGATGGCCTCTGGCGTGGTCCCACCCTGTGCGCGTTCCGCCTTGACCATGGGGGTGTC
GGGAACCCTGGCGCTGCTTCAGGGAGCCCGGGGCTTCGCCTAAGGCCCAAGGAAGGGGAA
TTACTGGCTCAGACTGCCGTGGCTCCGGGGGAGCCTCCTCAGGACAACTCAACCAACCAC
CCCTCTGCCCCACCTTCATTAAAATCTTGAACAACAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4887170|gb|AAD32215.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4887170|gb|AAD32215.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               244-1476, gnl|bosTau2|chr7 (30539167-30540409)
               

               
               244-1476, gnl|Hg17|chr5 (139992750-139991501)
               

               
               244-1476, gnl|Mm7|chr18 (37102599-37101426)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               244-1476, gnl|bosTau2|chr7 (30539167-30540409)
               

               
               244-1476, gnl|Hg17|chr5 (139992750-139991501)
               

               
               244-1476, gnl|Mm7|chr18 (37102599-37101426)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cli (0.764059)
               

               
               lnt (0.284616)
               

               
               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.764059)
               

               
               lnt (0.284616)
               

               
               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	244-1476, gnl\|bosTau2\|chr7 (30539167-30540409)
	244-1476, gnl\|Hg17\|chr5 (139992750-139991501)
	244-1476, gnl\|Mm7\|chr18 (37102599-37101426)

	cli (0.764059)
	lnt (0.284616)
	nlu (0.191681)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	clu (0.119646)
	jca (0.11396)