Ss1.1-Liv1-LVR01A010093.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CACCCGCAGCCCCGGCTCCGCGGCGGCGGCGGTGGGAGTCTGCAGGGCGCTCGCCCCAGG CGCCTCCGCAGCTGACAGCGGCCTCGGCAGCAGCGAGCGAGCGTCCTGGGCCCGCTGTCC TGCGGCCCCGGGTCCCCGCGTCCCCTGTCGCCCATCCCGCCCCTTCCTCCCCCATGGAGC CGCTGCTGCGGGCCGAGCTGCGCACCACGACCCTGCGCGCCTTTGGGAGCCCGGGCGCCG GCTGCATCAGCGAGGGGCGCGCCTACGACACCGACGCAGGCCCCGTGTTTGTCAAGGTCA ACCGCAGGTCGCTGGCCCGGCAGATGTTTGAGGGGGAGATGACGAGCCTGGAGGCTCTTC GGAGCACCGGCCTGGTGCGGGCGCCTCGGCCCATCAAGGTGATTGACCTGCCTGGAGGTG GGGCGGCCTTCGTGATGGAGCATCTGAAGATGAGGGGCCTGAGCAGCCAGGCAGCAAAAC TTGGAGACCAGATGGCAGAGCTGCACCTTTACAACCAGAAGCTCGGGGAGAAGTTGCGGG GGGAGGAGAGCAGAGTGGGTCAGAGGGCTGAGGGTGCCGGGCCGCAGTATGTGACCAAGT TTGGCTTCCACACGGTGACCTGCTGTGGCTTCATCCCGCAGGTGAACGAGTGGCAGGACG ACTGGCCAACCTTCTTCGCGCGGCACCGGCTCCAAGCACAGCTGGACCTCATTGAGAAGG ACTATGCTGACCGAGAGGCACGAGAACTCTGGTCACGGCTGCAGGTGAAGATCCCGGATC TGTTTTGTGGCCTAGAGATTGTCCCCGCCCTTCTTCACGGGGACCTCTGGTCCGGAAACG TGGCGGAGGACGACTTGGGGCCCGTCGTGTATGACCCGGCCTCCTTCTACGGCCACTCTG AGTTCGAACTGGCCATTGCCTTGATGTTCGGGGGTTTTCCCAGGCCCTTCTTCACCGCCT ACCACCGGAAGGTCCCCAAGGCTCCCGGGTTTGACAGGCGGCTGCTGCTCTACCAGCTCT TTAACTACCTAAACCACTGGAACCACTTCGGGCGGCAGTACAGGAGCCCGTCCCTGGGCA CCATGCGGAAGCTTCTCAAGTAGCAGCCGGCTCCGTCCCGTCCCCGCTCAGGCGCCTCGC AAAGCTGGGGCCGCAGCGCCGGAGGGACTTCAGGACAATAAAGCCCTTGGGGTCTCGGGG |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CACCCGCAGCCCCGGCTCCGCGGCGGCGGCGGTGGGAGTCTGCAGGGCGCTCGCCCCAGG CGCCTCCGCAGCTGACAGCGGCCTCGGCAGCAGCGAGCGAGCGTCCTGGGCCCGCTGTCC TGCGGCCCCGGGTCCCCGCGTCCCCTGTCGCCCATCCCGCCCCTTCCTCCCCCATGGAGC CGCTGCTGCGGGCCGAGCTGCGCACCACGACCCTGCGCGCCTTTGGGAGCCCGGGCGCCG GCTGCATCAGCGAGGGGCGCGCCTACGACACCGACGCAGGCCCCGTGTTTGTCAAGGTCA ACCGCAGGTCGCTGGCCCGGCAGATGTTTGAGGGGGAGATGACGAGCCTGGAGGCTCTTC GGAGCACCGGCCTGGTGCGGGCGCCTCGGCCCATCAAGGTGATTGACCTGCCTGGAGGTG GGGCGGCCTTCGTGATGGAGCATCTGAAGATGAGGGGCCTGAGCAGCCAGGCAGCAAAAC TTGGAGACCAGATGGCAGAGCTGCACCTTTACAACCAGAAGCTCGGGGAGAAGTTGCGGG GGGAGGAGAGCAGAGTGGGTCAGAGGGCTGAGGGTGCCGGGCCGCAGTATGTGACCAAGT TTGGCTTCCACACGGTGACCTGCTGTGGCTTCATCCCGCAGGTGAACGAGTGGCAGGACG ACTGGCCAACCTTCTTCGCGCGGCACCGGCTCCAAGCACAGCTGGACCTCATTGAGAAGG ACTATGCTGACCGAGAGGCACGAGAACTCTGGTCACGGCTGCAGGTGAAGATCCCGGATC TGTTTTGTGGCCTAGAGATTGTCCCCGCCCTTCTTCACGGGGACCTCTGGTCCGGAAACG TGGCGGAGGACGACTTGGGGCCCGTCGTGTATGACCCGGCCTCCTTCTACGGCCACTCTG AGTTCGAACTGGCCATTGCCTTGATGTTCGGGGGTTTTCCCAGGCCCTTCTTCACCGCCT ACCACCGGAAGGTCCCCAAGGCTCCCGGGTTTGACAGGCGGCTGCTGCTCTACCAGCTCT TTAACTACCTAAACCACTGGAACCACTTCGGGCGGCAGTACAGGAGCCCGTCCCTGGGCA CCATGCGGAAGCTTCTCAAGTAGCAGCCGGCTCCGTCCCGTCCCCGCTCAGGCGCCTCGC AAAGCTGGGGCCGCAGCGCCGGAGGGACTTCAGGACAATAAAGCCCTTGGGGTCTCGGGG |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
307-425, + strand, RNAz p=0.578293 | |
1002-1121, - strand, RNAz p=0.62821 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
307-425, + strand, RNAz p=0.578293 | |
1002-1121, - strand, RNAz p=0.62821 |
Aligned organism(s): 45 entry(ies) | More info |
Aligned organism(s): 45 entry(ies) | Help | Less info |
307-466, gnl|bosTau2|chr19 (44138427-44138268) | |
307-466, gnl|canFam2|chrUn (11940086-11940255) | |
307-466, gnl|canFam2|chrUn (11940099-11940260) | |
307-466, gnl|danRer3|chrNA (65188704-65188868) | |
307-466, gnl|danRer3|chrUn (461046-461216) | |
307-466, gnl|dasNov1|scaffold_110992 (332-488) | |
307-466, gnl|dasNov1|scaffold_110992 (332-492) | |
307-466, gnl|echTel1|scaffold_171783 (11735-11577) | |
307-466, gnl|echTel1|scaffold_171783 (11735-11572) | |
307-466, gnl|fr1|chrUn (127497772-127497616) | |
307-466, gnl|fr1|chrUn (127497772-127497613) | |
307-466, gnl|hg17|chr17 (78289643-78289813) | |
307-466, gnl|Hg17|chr17 (78289646-78289805) | |
307-466, gnl|hg17|chr22 (23423858-23424029) | |
307-466, gnl|loxAfr1|scaffold_14992 (33958-33794) | |
307-466, gnl|loxAfr1|scaffold_14992 (33957-33789) | |
307-466, gnl|mm7|chr11 (121546305-121546472) | |
307-466, gnl|mm7|chr11 (121546307-121546487) | |
307-466, gnl|Mm7|chr11 (121546310-121546469) | |
307-466, gnl|oryCun1|scaffold_132797 (727-890) | |
307-466, gnl|oryCun1|scaffold_132797 (727-890) | |
307-466, gnl|panTro1|chr19 (82083660-82083830) | |
307-466, gnl|panTro1|chrUn_random (15460625-15460796) | |
307-466, gnl|rheMac2|chr10 (66953313-66953481) | |
307-466, gnl|rheMac2|chr10 (66953319-66953488) | |
307-466, gnl|rn3|chr10 (110676815-110676981) | |
307-466, gnl|rn3|chr10 (110676817-110676996) | |
307-466, gnl|tetNig1|chr3 (10808720-10808562) | |
763-1200, gnl|bosTau2|chr19 (44132419-44131980) | |
763-1200, gnl|canFam2|chrUn (11954250-11954611) | |
763-1200, gnl|danRer3|chrUn (467686-468027) | |
763-1200, gnl|dasNov1|scaffold_195060 (1460-1107) | |
763-1200, gnl|echTel1|scaffold_171783 (5691-5334) | |
763-1200, gnl|fr1|chrUn (127496736-127496395) | |
763-1200, gnl|galGal2|chr18 (3181508-3181158) | |
763-1200, gnl|hg17|chr17 (78301565-78301922) | |
763-1200, gnl|Hg17|chr17 (78301580-78301941) | |
763-1200, gnl|loxAfr1|scaffold_56680 (13613-13256) | |
763-1200, gnl|mm7|chr11 (121559141-121559497) | |
763-1200, gnl|monDom2|scaffold_88 (1033658-1034012) | |
763-1200, gnl|oryCun1|scaffold_182961 (3772-4129) | |
763-1200, gnl|rheMac2|chr16 (78234312-78234669) | |
763-1200, gnl|rn3|chr10 (110688802-110689159) | |
763-1200, gnl|tetNig1|chr3 (10807868-10807533) | |
763-1200, gnl|xenTro1|scaffold_1373 (48727-49076) |
Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
307-466, gnl|bosTau2|chr19 (44138427-44138268) | |
307-466, gnl|canFam2|chrUn (11940086-11940255) | |
307-466, gnl|canFam2|chrUn (11940099-11940260) | |
307-466, gnl|danRer3|chrNA (65188704-65188868) | |
307-466, gnl|danRer3|chrUn (461046-461216) | |
307-466, gnl|dasNov1|scaffold_110992 (332-488) | |
307-466, gnl|dasNov1|scaffold_110992 (332-492) | |
307-466, gnl|echTel1|scaffold_171783 (11735-11577) | |
307-466, gnl|echTel1|scaffold_171783 (11735-11572) | |
307-466, gnl|fr1|chrUn (127497772-127497616) | |
307-466, gnl|fr1|chrUn (127497772-127497613) | |
307-466, gnl|hg17|chr17 (78289643-78289813) | |
307-466, gnl|Hg17|chr17 (78289646-78289805) | |
307-466, gnl|hg17|chr22 (23423858-23424029) | |
307-466, gnl|loxAfr1|scaffold_14992 (33958-33794) | |
307-466, gnl|loxAfr1|scaffold_14992 (33957-33789) | |
307-466, gnl|mm7|chr11 (121546305-121546472) | |
307-466, gnl|mm7|chr11 (121546307-121546487) | |
307-466, gnl|Mm7|chr11 (121546310-121546469) | |
307-466, gnl|oryCun1|scaffold_132797 (727-890) | |
307-466, gnl|oryCun1|scaffold_132797 (727-890) | |
307-466, gnl|panTro1|chr19 (82083660-82083830) | |
307-466, gnl|panTro1|chrUn_random (15460625-15460796) | |
307-466, gnl|rheMac2|chr10 (66953313-66953481) | |
307-466, gnl|rheMac2|chr10 (66953319-66953488) | |
307-466, gnl|rn3|chr10 (110676815-110676981) | |
307-466, gnl|rn3|chr10 (110676817-110676996) | |
307-466, gnl|tetNig1|chr3 (10808720-10808562) | |
763-1200, gnl|bosTau2|chr19 (44132419-44131980) | |
763-1200, gnl|canFam2|chrUn (11954250-11954611) | |
763-1200, gnl|danRer3|chrUn (467686-468027) | |
763-1200, gnl|dasNov1|scaffold_195060 (1460-1107) | |
763-1200, gnl|echTel1|scaffold_171783 (5691-5334) | |
763-1200, gnl|fr1|chrUn (127496736-127496395) | |
763-1200, gnl|galGal2|chr18 (3181508-3181158) | |
763-1200, gnl|hg17|chr17 (78301565-78301922) | |
763-1200, gnl|Hg17|chr17 (78301580-78301941) | |
763-1200, gnl|loxAfr1|scaffold_56680 (13613-13256) | |
763-1200, gnl|mm7|chr11 (121559141-121559497) | |
763-1200, gnl|monDom2|scaffold_88 (1033658-1034012) | |
763-1200, gnl|oryCun1|scaffold_182961 (3772-4129) | |
763-1200, gnl|rheMac2|chr16 (78234312-78234669) | |
763-1200, gnl|rn3|chr10 (110688802-110689159) | |
763-1200, gnl|tetNig1|chr3 (10807868-10807533) | |
763-1200, gnl|xenTro1|scaffold_1373 (48727-49076) |
Expressed library(ies): 5 entry(ies) | More info |
Expressed library(ies): 5 entry(ies) | Help | Less info |
hyp (0.285673) | |
mas (0.210305) | |
fcc (0.197785) | |
cli (0.152812) | |
ebs (0.118301) |
Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
hyp (0.285673) | |
mas (0.210305) | |
fcc (0.197785) | |
cli (0.152812) | |
ebs (0.118301) |