Ss1.1-Liv1-LVR01A040086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTCGCTGAGCCTGTCACCTGTATTACAGGAGCTGAACCAGAAATGTCGTCCTCAGCCAT GCCAGACATACCTGTCCCACTGACCAATTTGAAGTTTCAATATACTAAGATTTTCATAAA TAATGAATGGCATAATTCAGTGAGTGGCAAGAAATTTCCAGTCTTTAATCCTGCAACTGA GGAAAAACTCTGCGAGGTAGAAGAAGGAGATAAGGAGGATGTTGACAAAGCAGTGAAGGC CGCAAGACAAGCTTTTCAGATCGGCTCTCCATGGCGTACTATGGATGCTTCAGAGAGAGG ACAGCTAATAAACAAACTGGCTGATTTAATTGAAAGAGATCGTCTGCTCCTGGCTACAAT GGAGTCAATGAATGGTGGAAAACTATTTTCCAATGCATATCTGATGGATTTAGGAGGCTG CATAAGAACACTGCGCTACTGTGCTGGCTGGGCTGACAAGATCCATGGCCGCACAATACC GATGGATGGAAACTTTTTCACTTATACAAGAAGTGAGCCTATTGGAGTGTGTGGCCAGAT CATTCCTTGGAATTTCCCGTTGGTCATGCTCATTTGGAAGATAGGGCCTGCCCTTAGCTG TGGAAACACAGTGGTTGTCAAACCAGCTGAGCAAACCCCTCTCACTGCTCTTCATGTGGC ATCTTTAATAAAAGAGGCAGGATTTCCTCCTGGAGTAGTAAATATTGTTCCCGGTTATGG GCCTACCGCAGGGGCAGCCATTTCTTCTCACATGGATGTAGACAAAGTGGCCTTCACGGG ATCTACACAGGTTGGCAAAATGATCAAAGAAGCTGCCGGGAAAAGCAATCTGAAGAGGGT GACCCTGGAACTCGGTGGAAAGAGTCCTTGCATTGTGTTTGCAGATGCTGACCTGGACGC TGCTGTTGAATTTGCACATCACGGGCTCTTCTACCACCAGGGCCAATGTTGCATAGCTGC ATCTCGGCTTTTTGTGGAAGAATCAATTTACAATGAATTTGTTCGAAAGAGTGTTGAGCG GGCTAAAAAGTATGTTCTTGGAAATCCTCTGACCCCAGGGGTCAATCAAGGCCCTCAGAT TGATAAGGAACAATATGAAAAAATACTTGACCTTATTGAAAGTGGGAAGAAAGAAGGAGC AAAACTGGAGTGTGGTGGAGGCCCATGGGGGAATAAAGGCTACTTTATCCAACCCACGGT TTTCTCTAATGTTACAGATGAGATGCGCATTGCCAAAGAGGAGATATTTGGACCAGTGCA ACAAATCATGAAGTTTAAATCTTTAGATGATGTGATCAAGAGAGCAAACAATACTCTCTA TGGCTTATCAGCAGGAATTTTTACCAAAGACATTGATAAAGCTATCACAGTCTCCTCTGC TCTTCAGTCTGGGACAGTGTGGGTGAACTGCTATGGTGTGTTATCTGCCCATTGCCCCTT TGGTGGATTCAAGATGTCTGGAAATGGACGAGAACTCGGAGAATATGGTCTCCATGAATA CACAGAGATCAAGACAGTCACAATCAAAATTTCTCAGAAGAACTCATAAACTACAGGATT GCAGAGATGACTCCTCAATGGCTAAGCGTCTCCTATAGTGGCTAATATATCATAGTGGGT TTTAAATGCAAAATTGTTCTTTCCTTGATTTTTTAAACATAAACTAATCATAATAGCATT AATACTACACATAGAAAACTTGACATGTAGCTTACACTGAAAGAATCATTTACCTTCTGA TAAGTGACCCCCAAATCCTATCTGTAATGAAAAGAATGGATTTGGATGAACGATCTCTCT AACTCTGTAATAGTTGTGTGCTTTTCTTTGTAGCAACTTGTCAAAAATAATCATTTTATA GAAGAGGACCAGTTGTTTAGCTTCTTTCCCTTGACAACCCCTTGAAGTACTTGTACCTGT TAACTGCAGAGTAGATGTGCTCTAGTCCCTGTAGTGGTGAAGCCCTTGGAGTTTGTTGAA ATGTTTCGTAGAATGTCTGCTTGTGAAATGAAGTAATGCCTGAAAACTTAGTTGTAACCT AAACATAAAGCTTAATAAAAACAACCTTGCATGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTCGCTGAGCCTGTCACCTGTATTACAGGAGCTGAACCAGAAATGTCGTCCTCAGCCAT GCCAGACATACCTGTCCCACTGACCAATTTGAAGTTTCAATATACTAAGATTTTCATAAA TAATGAATGGCATAATTCAGTGAGTGGCAAGAAATTTCCAGTCTTTAATCCTGCAACTGA GGAAAAACTCTGCGAGGTAGAAGAAGGAGATAAGGAGGATGTTGACAAAGCAGTGAAGGC CGCAAGACAAGCTTTTCAGATCGGCTCTCCATGGCGTACTATGGATGCTTCAGAGAGAGG ACAGCTAATAAACAAACTGGCTGATTTAATTGAAAGAGATCGTCTGCTCCTGGCTACAAT GGAGTCAATGAATGGTGGAAAACTATTTTCCAATGCATATCTGATGGATTTAGGAGGCTG CATAAGAACACTGCGCTACTGTGCTGGCTGGGCTGACAAGATCCATGGCCGCACAATACC GATGGATGGAAACTTTTTCACTTATACAAGAAGTGAGCCTATTGGAGTGTGTGGCCAGAT CATTCCTTGGAATTTCCCGTTGGTCATGCTCATTTGGAAGATAGGGCCTGCCCTTAGCTG TGGAAACACAGTGGTTGTCAAACCAGCTGAGCAAACCCCTCTCACTGCTCTTCATGTGGC ATCTTTAATAAAAGAGGCAGGATTTCCTCCTGGAGTAGTAAATATTGTTCCCGGTTATGG GCCTACCGCAGGGGCAGCCATTTCTTCTCACATGGATGTAGACAAAGTGGCCTTCACGGG ATCTACACAGGTTGGCAAAATGATCAAAGAAGCTGCCGGGAAAAGCAATCTGAAGAGGGT GACCCTGGAACTCGGTGGAAAGAGTCCTTGCATTGTGTTTGCAGATGCTGACCTGGACGC TGCTGTTGAATTTGCACATCACGGGCTCTTCTACCACCAGGGCCAATGTTGCATAGCTGC ATCTCGGCTTTTTGTGGAAGAATCAATTTACAATGAATTTGTTCGAAAGAGTGTTGAGCG GGCTAAAAAGTATGTTCTTGGAAATCCTCTGACCCCAGGGGTCAATCAAGGCCCTCAGAT TGATAAGGAACAATATGAAAAAATACTTGACCTTATTGAAAGTGGGAAGAAAGAAGGAGC AAAACTGGAGTGTGGTGGAGGCCCATGGGGGAATAAAGGCTACTTTATCCAACCCACGGT TTTCTCTAATGTTACAGATGAGATGCGCATTGCCAAAGAGGAGATATTTGGACCAGTGCA ACAAATCATGAAGTTTAAATCTTTAGATGATGTGATCAAGAGAGCAAACAATACTCTCTA TGGCTTATCAGCAGGAATTTTTACCAAAGACATTGATAAAGCTATCACAGTCTCCTCTGC TCTTCAGTCTGGGACAGTGTGGGTGAACTGCTATGGTGTGTTATCTGCCCATTGCCCCTT TGGTGGATTCAAGATGTCTGGAAATGGACGAGAACTCGGAGAATATGGTCTCCATGAATA CACAGAGATCAAGACAGTCACAATCAAAATTTCTCAGAAGAACTCATAAACTACAGGATT GCAGAGATGACTCCTCAATGGCTAAGCGTCTCCTATAGTGGCTAATATATCATAGTGGGT TTTAAATGCAAAATTGTTCTTTCCTTGATTTTTTAAACATAAACTAATCATAATAGCATT AATACTACACATAGAAAACTTGACATGTAGCTTACACTGAAAGAATCATTTACCTTCTGA TAAGTGACCCCCAAATCCTATCTGTAATGAAAAGAATGGATTTGGATGAACGATCTCTCT AACTCTGTAATAGTTGTGTGCTTTTCTTTGTAGCAACTTGTCAAAAATAATCATTTTATA GAAGAGGACCAGTTGTTTAGCTTCTTTCCCTTGACAACCCCTTGAAGTACTTGTACCTGT TAACTGCAGAGTAGATGTGCTCTAGTCCCTGTAGTGGTGAAGCCCTTGGAGTTTGTTGAA ATGTTTCGTAGAATGTCTGCTTGTGAAATGAAGTAATGCCTGAAAACTTAGTTGTAACCT AAACATAAAGCTTAATAAAAACAACCTTGCATGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 567-684, - strand, RNAz p=0.518498 | |
| 1478-1597, - strand, RNAz p=0.507784 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 567-684, - strand, RNAz p=0.518498 | |
| 1478-1597, - strand, RNAz p=0.507784 |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 3-112, gnl|bosTau2|chr8 (23298386-23298277) | |
| 3-112, gnl|canFam2|chr1 (88008151-88008037) | |
| 3-112, gnl|echTel1|scaffold_323015 (44638-44752) | |
| 3-112, gnl|galGal2|chrZ (16710007-16710174) | |
| 3-112, gnl|hg17|chr9 (72797400-72797514) | |
| 3-112, gnl|Hg17|chr9 (72797511-72797402) | |
| 3-112, gnl|loxAfr1|scaffold_11224 (67748-67635) | |
| 3-112, gnl|mm7|chr19 (20302659-20302545) | |
| 3-112, gnl|Mm7|chr19 (20302546-20302655) | |
| 3-112, gnl|monDom2|scaffold_17 (15924438-15924265) | |
| 3-112, gnl|oryCun1|scaffold_205731 (21942-22056) | |
| 3-112, gnl|panTro1|chr11 (56622433-56622547) | |
| 3-112, gnl|rheMac2|chr15 (81715038-81715152) | |
| 3-112, gnl|rn3|chr1 (223895798-223895684) | |
| 213-354, gnl|bosTau2|chr8 (23274438-23274297) | |
| 213-354, gnl|Hg17|chr9 (72775491-72775350) | |
| 213-354, gnl|Mm7|chr19 (20318452-20318593) | |
| 356-496, gnl|bosTau2|chr8 (23271859-23271718) | |
| 356-496, gnl|Hg17|chr9 (72773491-72773350) | |
| 356-496, gnl|Mm7|chr19 (20320530-20320671) | |
| 548-684, gnl|bosTau2|chr8 (23268517-23268381) | |
| 548-684, gnl|canFam2|chr1 (88034561-88034402) | |
| 548-684, gnl|danRer3|chrUn (71151782-71151923) | |
| 548-684, gnl|dasNov1|scaffold_63246 (3553-3409) | |
| 548-684, gnl|echTel1|scaffold_324971 (10249-10405) | |
| 548-684, gnl|fr1|chrUn (81451031-81450895) | |
| 548-684, gnl|galGal2|chrZ (16695865-16696011) | |
| 548-684, gnl|hg17|chr9 (72769935-72770095) | |
| 548-684, gnl|Hg17|chr9 (72770082-72769946) | |
| 548-684, gnl|loxAfr1|scaffold_560 (69202-69361) | |
| 548-684, gnl|mm7|chr19 (20323781-20323621) | |
| 548-684, gnl|Mm7|chr19 (20323632-20323768) | |
| 548-684, gnl|monDom2|scaffold_17 (15963462-15963305) | |
| 548-684, gnl|oryCun1|scaffold_158600 (5067-5226) | |
| 548-684, gnl|panTro1|chr11 (56594984-56595144) | |
| 548-684, gnl|rheMac2|chr15 (81679799-81679959) | |
| 548-684, gnl|rn3|chr1 (223917114-223916955) | |
| 548-684, gnl|tetNig1|chrUn_random (128987026-128987144) | |
| 548-684, gnl|xenTro1|scaffold_982 (278489-278354) | |
| 788-892, gnl|bosTau2|chr8 (23262900-23262796) | |
| 788-892, gnl|canFam2|chr1 (88040664-88040541) | |
| 788-892, gnl|danRer3|chrUn (71143393-71143503) | |
| 788-892, gnl|dasNov1|scaffold_94 (32976-32853) | |
| 788-892, gnl|echTel1|scaffold_324971 (6453-6576) | |
| 788-892, gnl|fr1|chrUn (81455248-81455128) | |
| 788-892, gnl|galGal2|chrZ (16689692-16689814) | |
| 788-892, gnl|hg17|chr9 (72763183-72763306) | |
| 788-892, gnl|Hg17|chr9 (72763295-72763191) | |
| 788-892, gnl|loxAfr1|scaffold_560 (62562-62685) | |
| 788-892, gnl|mm7|chr19 (20329472-20329349) | |
| 788-892, gnl|Mm7|chr19 (20329358-20329462) | |
| 788-892, gnl|monDom2|scaffold_17 (15964892-15964769) | |
| 788-892, gnl|oryCun1|scaffold_158600 (868-975) | |
| 788-892, gnl|panTro1|chr11 (56588450-56588573) | |
| 788-892, gnl|rheMac2|chr15 (81673248-81673371) | |
| 788-892, gnl|rn3|chr1 (223923669-223923546) | |
| 788-892, gnl|tetNig1|chrUn_random (128971156-128971280) | |
| 788-892, gnl|xenTro1|scaffold_982 (279980-279857) | |
| 1076-1243, gnl|bosTau2|chr28 (9217263-9217096) | |
| 1076-1243, gnl|Hg17|chr15 (99263248-99263415) | |
| 1076-1243, gnl|Mm7|chr7 (62260105-62259938) | |
| 1478-2074, gnl|bosTau2|chr8 (23246355-23245752) | |
| 1478-2074, gnl|canFam2|chr1 (88062424-88062025) | |
| 1478-2074, gnl|echTel1|scaffold_243335 (774-1156) | |
| 1478-2074, gnl|galGal2|chrZ (16678421-16678817) | |
| 1478-2074, gnl|hg17|chr9 (72745124-72745528) | |
| 1478-2074, gnl|Hg17|chr9 (72745749-72745141) | |
| 1478-2074, gnl|loxAfr1|scaffold_560 (39930-40337) | |
| 1478-2074, gnl|mm7|chr19 (20343786-20343420) | |
| 1478-2074, gnl|Mm7|chr19 (20343202-20343769) | |
| 1478-2074, gnl|monDom2|scaffold_17 (15985841-15985426) | |
| 1478-2074, gnl|oryCun1|scaffold_211988 (88005-88414) | |
| 1478-2074, gnl|panTro1|chr11 (56570184-56570588) | |
| 1478-2074, gnl|rheMac2|chr15 (81656437-81656840) | |
| 1478-2074, gnl|rn3|chr1 (223937263-223936896) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-112, gnl|bosTau2|chr8 (23298386-23298277) | |
| 3-112, gnl|canFam2|chr1 (88008151-88008037) | |
| 3-112, gnl|echTel1|scaffold_323015 (44638-44752) | |
| 3-112, gnl|galGal2|chrZ (16710007-16710174) | |
| 3-112, gnl|hg17|chr9 (72797400-72797514) | |
| 3-112, gnl|Hg17|chr9 (72797511-72797402) | |
| 3-112, gnl|loxAfr1|scaffold_11224 (67748-67635) | |
| 3-112, gnl|mm7|chr19 (20302659-20302545) | |
| 3-112, gnl|Mm7|chr19 (20302546-20302655) | |
| 3-112, gnl|monDom2|scaffold_17 (15924438-15924265) | |
| 3-112, gnl|oryCun1|scaffold_205731 (21942-22056) | |
| 3-112, gnl|panTro1|chr11 (56622433-56622547) | |
| 3-112, gnl|rheMac2|chr15 (81715038-81715152) | |
| 3-112, gnl|rn3|chr1 (223895798-223895684) | |
| 213-354, gnl|bosTau2|chr8 (23274438-23274297) | |
| 213-354, gnl|Hg17|chr9 (72775491-72775350) | |
| 213-354, gnl|Mm7|chr19 (20318452-20318593) | |
| 356-496, gnl|bosTau2|chr8 (23271859-23271718) | |
| 356-496, gnl|Hg17|chr9 (72773491-72773350) | |
| 356-496, gnl|Mm7|chr19 (20320530-20320671) | |
| 548-684, gnl|bosTau2|chr8 (23268517-23268381) | |
| 548-684, gnl|canFam2|chr1 (88034561-88034402) | |
| 548-684, gnl|danRer3|chrUn (71151782-71151923) | |
| 548-684, gnl|dasNov1|scaffold_63246 (3553-3409) | |
| 548-684, gnl|echTel1|scaffold_324971 (10249-10405) | |
| 548-684, gnl|fr1|chrUn (81451031-81450895) | |
| 548-684, gnl|galGal2|chrZ (16695865-16696011) | |
| 548-684, gnl|hg17|chr9 (72769935-72770095) | |
| 548-684, gnl|Hg17|chr9 (72770082-72769946) | |
| 548-684, gnl|loxAfr1|scaffold_560 (69202-69361) | |
| 548-684, gnl|mm7|chr19 (20323781-20323621) | |
| 548-684, gnl|Mm7|chr19 (20323632-20323768) | |
| 548-684, gnl|monDom2|scaffold_17 (15963462-15963305) | |
| 548-684, gnl|oryCun1|scaffold_158600 (5067-5226) | |
| 548-684, gnl|panTro1|chr11 (56594984-56595144) | |
| 548-684, gnl|rheMac2|chr15 (81679799-81679959) | |
| 548-684, gnl|rn3|chr1 (223917114-223916955) | |
| 548-684, gnl|tetNig1|chrUn_random (128987026-128987144) | |
| 548-684, gnl|xenTro1|scaffold_982 (278489-278354) | |
| 788-892, gnl|bosTau2|chr8 (23262900-23262796) | |
| 788-892, gnl|canFam2|chr1 (88040664-88040541) | |
| 788-892, gnl|danRer3|chrUn (71143393-71143503) | |
| 788-892, gnl|dasNov1|scaffold_94 (32976-32853) | |
| 788-892, gnl|echTel1|scaffold_324971 (6453-6576) | |
| 788-892, gnl|fr1|chrUn (81455248-81455128) | |
| 788-892, gnl|galGal2|chrZ (16689692-16689814) | |
| 788-892, gnl|hg17|chr9 (72763183-72763306) | |
| 788-892, gnl|Hg17|chr9 (72763295-72763191) | |
| 788-892, gnl|loxAfr1|scaffold_560 (62562-62685) | |
| 788-892, gnl|mm7|chr19 (20329472-20329349) | |
| 788-892, gnl|Mm7|chr19 (20329358-20329462) | |
| 788-892, gnl|monDom2|scaffold_17 (15964892-15964769) | |
| 788-892, gnl|oryCun1|scaffold_158600 (868-975) | |
| 788-892, gnl|panTro1|chr11 (56588450-56588573) | |
| 788-892, gnl|rheMac2|chr15 (81673248-81673371) | |
| 788-892, gnl|rn3|chr1 (223923669-223923546) | |
| 788-892, gnl|tetNig1|chrUn_random (128971156-128971280) | |
| 788-892, gnl|xenTro1|scaffold_982 (279980-279857) | |
| 1076-1243, gnl|bosTau2|chr28 (9217263-9217096) | |
| 1076-1243, gnl|Hg17|chr15 (99263248-99263415) | |
| 1076-1243, gnl|Mm7|chr7 (62260105-62259938) | |
| 1478-2074, gnl|bosTau2|chr8 (23246355-23245752) | |
| 1478-2074, gnl|canFam2|chr1 (88062424-88062025) | |
| 1478-2074, gnl|echTel1|scaffold_243335 (774-1156) | |
| 1478-2074, gnl|galGal2|chrZ (16678421-16678817) | |
| 1478-2074, gnl|hg17|chr9 (72745124-72745528) | |
| 1478-2074, gnl|Hg17|chr9 (72745749-72745141) | |
| 1478-2074, gnl|loxAfr1|scaffold_560 (39930-40337) | |
| 1478-2074, gnl|mm7|chr19 (20343786-20343420) | |
| 1478-2074, gnl|Mm7|chr19 (20343202-20343769) | |
| 1478-2074, gnl|monDom2|scaffold_17 (15985841-15985426) | |
| 1478-2074, gnl|oryCun1|scaffold_211988 (88005-88414) | |
| 1478-2074, gnl|panTro1|chr11 (56570184-56570588) | |
| 1478-2074, gnl|rheMac2|chr15 (81656437-81656840) | |
| 1478-2074, gnl|rn3|chr1 (223937263-223936896) |
| Expressed library(ies): 38 entry(ies) | More info |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
| tra (8.86263) | |
| lun (5.5681) | |
| kid (2.59471) | |
| sin (1.74948) | |
| ski (1.61409) | |
| ret (1.5448) | |
| mga (1.12144) | |
| liv (1.02399) | |
| ova (0.774793) | |
| sag (0.730861) | |
| lin (0.728014) | |
| pgl (0.7109) | |
| duo (0.691204) | |
| fat (0.58971) | |
| mgm (0.541028) | |
| rec (0.519211) | |
| mgp (0.461361) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| aor (0.390549) | |
| bla (0.373042) | |
| eye (0.341006) | |
| fco (0.314416) | |
| cli (0.305623) | |
| isp (0.300752) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| cty (0.20816) | |
| tes (0.207814) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| cki (0.165235) | |
| eli (0.151814) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ldo (0.0970026) |
| Expressed library(ies): 38 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (8.86263) | |
| lun (5.5681) | |
| kid (2.59471) | |
| sin (1.74948) | |
| ski (1.61409) | |
| ret (1.5448) | |
| mga (1.12144) | |
| liv (1.02399) | |
| ova (0.774793) | |
| sag (0.730861) | |
| lin (0.728014) | |
| pgl (0.7109) | |
| duo (0.691204) | |
| fat (0.58971) | |
| mgm (0.541028) | |
| rec (0.519211) | |
| mgp (0.461361) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| aor (0.390549) | |
| bla (0.373042) | |
| eye (0.341006) | |
| fco (0.314416) | |
| cli (0.305623) | |
| isp (0.300752) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| cty (0.20816) | |
| tes (0.207814) | |
| jej (0.197844) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| cki (0.165235) | |
| eli (0.151814) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ldo (0.0970026) |