Non-Coding RNA Search

Ss1.1-Liv1-LVR01A050085.5

Sequence:


               
               TCTCTCCTCAGCTGTCCCCTGCTCCCCCTGACCGTCCTCTCCGCCCGAAGCAAAACTCTA
ATGACAGTGCTCAGTAGAGCTTAGCTTCGGAAGGAGAGGTGATTCGAATGGTCGGGCTAC
CACCACCAGGAGAGGCACTTCGGCCGCCCAGGTGCTGATCTGAATCTGATCCATACCTTT
CTGACCAAAACTGTTTACCCACGGTGGAAGGGACTGGGTACCCAAATGGAGACGCCACCA
GTCAGTCCACTGGGAGAGAAGAACATTTCTCAACCGCAACAACGATGGAAAAAGAACTCC
CAGAAGATCCTTGATTCAACTACTCAGATTAGGCAGCAGCCCCAAGACCCTTCTACTGAA
CTTCTTGAGGGGAGAGTGAGCCCAGATCCAGCCGGCCAAATTCTAGAAAATCTTCAAGAA
ATTGAAAAGCTGGCCGTTGGACGTGAAGGAGATTCTGATAAATCTCATGGACCAGCCAGT
GAGATGCCAGAGCCCCTTCAAGCTTCTGAACTCTGGTACTGCCCCGATGGGAGCTTTGTC
AAAAAGATCCTAATCCATGGCCACGGCTTGGACAAACCCAAGCTGGGCTCCCGCTGCCGG
GTACAGGTTTTGGGATTTCCTTTGGGGTCAGGGCTGCCAGAGGGCTGGACAGAGCTAACT
ATGGGGTTAGGCCCATGGAGGGAGGAAACTTGGGGAGAGCTTGTAGAGAAGTGCTTGGAG
TCCATGTGTCAAGGTGAGGAGGCAGAACTTCAGCTCCCTGGGCGCTCTGGACCTCCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTCCTCAGCTGTCCCCTGCTCCCCCTGACCGTCCTCTCCGCCCGAAGCAAAACTCTA
ATGACAGTGCTCAGTAGAGCTTAGCTTCGGAAGGAGAGGTGATTCGAATGGTCGGGCTAC
CACCACCAGGAGAGGCACTTCGGCCGCCCAGGTGCTGATCTGAATCTGATCCATACCTTT
CTGACCAAAACTGTTTACCCACGGTGGAAGGGACTGGGTACCCAAATGGAGACGCCACCA
GTCAGTCCACTGGGAGAGAAGAACATTTCTCAACCGCAACAACGATGGAAAAAGAACTCC
CAGAAGATCCTTGATTCAACTACTCAGATTAGGCAGCAGCCCCAAGACCCTTCTACTGAA
CTTCTTGAGGGGAGAGTGAGCCCAGATCCAGCCGGCCAAATTCTAGAAAATCTTCAAGAA
ATTGAAAAGCTGGCCGTTGGACGTGAAGGAGATTCTGATAAATCTCATGGACCAGCCAGT
GAGATGCCAGAGCCCCTTCAAGCTTCTGAACTCTGGTACTGCCCCGATGGGAGCTTTGTC
AAAAAGATCCTAATCCATGGCCACGGCTTGGACAAACCCAAGCTGGGCTCCCGCTGCCGG
GTACAGGTTTTGGGATTTCCTTTGGGGTCAGGGCTGCCAGAGGGCTGGACAGAGCTAACT
ATGGGGTTAGGCCCATGGAGGGAGGAAACTTGGGGAGAGCTTGTAGAGAAGTGCTTGGAG
TCCATGTGTCAAGGTGAGGAGGCAGAACTTCAGCTCCCTGGGCGCTCTGGACCTCCTGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10440164|dbj|BAB15663.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10440164|dbj|BAB15663.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               380-539, - strand, RNAz p=0.962002
               

               
               580-779, + strand, RNAz p=0.590356

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               380-539, - strand, RNAz p=0.962002
               

               
               580-779, + strand, RNAz p=0.590356

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_022110, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_022110, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               149-780, gnl|bosTau2|chr23 (23734563-23735182)
               

               
               149-780, gnl|Hg17|chr6 (32205612-32204981)
               

               
               149-780, gnl|Mm7|chr17 (32730541-32731173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               149-780, gnl|bosTau2|chr23 (23734563-23735182)
               

               
               149-780, gnl|Hg17|chr6 (32205612-32204981)
               

               
               149-780, gnl|Mm7|chr17 (32730541-32731173)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	380-539, - strand, RNAz p=0.962002
	580-779, + strand, RNAz p=0.590356

	149-780, gnl\|bosTau2\|chr23 (23734563-23735182)
	149-780, gnl\|Hg17\|chr6 (32205612-32204981)
	149-780, gnl\|Mm7\|chr17 (32730541-32731173)