Ss1.1-Liv1-LVR01A110085.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAATGAGGAAGGAGGCCCAGACCCAGACTGCAGCTGGCCGGGCCTTCCCTCACCGCCCC GCCCTCCCCGGGGGCGCCCACCTCACCTCGCCCTCTGCTGCCGTCAACCTGTCGGGCCGG GCCGGGCAGGTCTGGGGATGGGCGGGGAGCCCTGAGCCCGCATCTCCTCTCCTCCTCCTC CTCCTCTTCTTCCTGTACTTGGCACAAAGGCCTCTCTGAGCTGGGAGCTGGGCTGCCGGG CACTCGAGGCCAAGAAGCTGGGGGTCCCTTGGGGGGGCGACCCCCACAACGAGGGGAACC ATCCACGCCGGCTGCCGGGAGTCCCACCCAGAGCGGCCCCAGGCGGGGTGCCCTTCCCCA GGGGCAGGGGCGATGCCGAGGCCGCCTCGTGCCCGCTGAGGCCTGCATCATGGCCCGCTC GCTGACCTGGCGCTGCTGCCCCTGGTGCCTGACCGAAGATGAGAAGTCGGCGGTCCGGAT CGACCAGGAAATCAATAAGATCCTCCTGGAGCAGAAGAAGCGGGACCGTGGGGAGCTGAA GCTGCTGCTGCTCGGTCCTGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCAT CATCCATGGGGCCGGCTACTCAGAGGAGGACCGCAAGAGCTTCCGGCCTCTGGTCTACCA GAACATCTTCGTGTCCATGCGGACCATGATCGAGGCCATGGACCGGCTGCAGATCCCCTT CAGCTGGCCTGAGAGCAAGCACCACGCCAGCCTGGTCATGAGTCAGGACCCCTACAAAGT GACCACCTTCGAGAAGCGCTACGCCGTGGCCATGCAGTGGCTGTGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAATGAGGAAGGAGGCCCAGACCCAGACTGCAGCTGGCCGGGCCTTCCCTCACCGCCCC GCCCTCCCCGGGGGCGCCCACCTCACCTCGCCCTCTGCTGCCGTCAACCTGTCGGGCCGG GCCGGGCAGGTCTGGGGATGGGCGGGGAGCCCTGAGCCCGCATCTCCTCTCCTCCTCCTC CTCCTCTTCTTCCTGTACTTGGCACAAAGGCCTCTCTGAGCTGGGAGCTGGGCTGCCGGG CACTCGAGGCCAAGAAGCTGGGGGTCCCTTGGGGGGGCGACCCCCACAACGAGGGGAACC ATCCACGCCGGCTGCCGGGAGTCCCACCCAGAGCGGCCCCAGGCGGGGTGCCCTTCCCCA GGGGCAGGGGCGATGCCGAGGCCGCCTCGTGCCCGCTGAGGCCTGCATCATGGCCCGCTC GCTGACCTGGCGCTGCTGCCCCTGGTGCCTGACCGAAGATGAGAAGTCGGCGGTCCGGAT CGACCAGGAAATCAATAAGATCCTCCTGGAGCAGAAGAAGCGGGACCGTGGGGAGCTGAA GCTGCTGCTGCTCGGTCCTGGCGAGAGCGGGAAGAGCACGTTCATCAAGCAGATGCGCAT CATCCATGGGGCCGGCTACTCAGAGGAGGACCGCAAGAGCTTCCGGCCTCTGGTCTACCA GAACATCTTCGTGTCCATGCGGACCATGATCGAGGCCATGGACCGGCTGCAGATCCCCTT CAGCTGGCCTGAGAGCAAGCACCACGCCAGCCTGGTCATGAGTCAGGACCCCTACAAAGT GACCACCTTCGAGAAGCGCTACGCCGTGGCCATGCAGTGGCTGTGGAG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 182-336, - strand, RNAz p=0.99329 | |
| 589-703, - strand, RNAz p=0.802207 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 182-336, - strand, RNAz p=0.99329 | |
| 589-703, - strand, RNAz p=0.802207 |
| Similar Transcript(s): 5 entry(ies) | More info |
| Similar Transcript(s): 5 entry(ies) | Help | Less info |
| 182-336, BP435716 full-length enriched swine cDNA library, adult lung Sus (dbj|BP435716.1|), blast E-value=0, identity=95.48% | |
| 182-336, BP459576 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP459576.1|), blast E-value=0, identity=94.84% | |
| 182-336, BW971911 full-length enriched swine cDNA library, adult periphral (dbj|BW971911.1|), blast E-value=0, identity=95.48% | |
| 182-336, CJ000185 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ000185.1|), blast E-value=0, identity=95.48% | |
| 182-336, CJ021181 full-length enriched swine cDNA library, adult spleen Sus (dbj|CJ021181.1|), blast E-value=0, identity=95.48% |
| Similar Transcript(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 182-336, BP435716 full-length enriched swine cDNA library, adult lung Sus (dbj|BP435716.1|), blast E-value=0, identity=95.48% | |
| 182-336, BP459576 full-length enriched swine cDNA library, adult ovary Sus (dbj|BP459576.1|), blast E-value=0, identity=94.84% | |
| 182-336, BW971911 full-length enriched swine cDNA library, adult periphral (dbj|BW971911.1|), blast E-value=0, identity=95.48% | |
| 182-336, CJ000185 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ000185.1|), blast E-value=0, identity=95.48% | |
| 182-336, CJ021181 full-length enriched swine cDNA library, adult spleen Sus (dbj|CJ021181.1|), blast E-value=0, identity=95.48% |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-556, gnl|bosTau2|chr7 (16606106-16606634) | |
| 1-556, gnl|Hg17|chr19 (3087031-3087595) | |
| 1-556, gnl|Mm7|chr10 (81318809-81318315) | |
| 560-722, gnl|bosTau2|chr7 (16588708-16588870) | |
| 560-722, gnl|canFam2|chr20 (59135477-59135651) | |
| 560-722, gnl|canFam2|chr20 (59135476-59135662) | |
| 560-722, gnl|canFam2|chr20 (59135664-59135470) | |
| 560-722, gnl|danRer3|chr22 (18742111-18742304) | |
| 560-722, gnl|danRer3|chr5 (62560771-62560585) | |
| 560-722, gnl|danRer3|chr5 (62560756-62560580) | |
| 560-722, gnl|dasNov1|scaffold_6665 (71702-71893) | |
| 560-722, gnl|dasNov1|scaffold_7462 (13222-13375) | |
| 560-722, gnl|dasNov1|scaffold_7462 (13222-13387) | |
| 560-722, gnl|echTel1|scaffold_11376 (3420-3579) | |
| 560-722, gnl|echTel1|scaffold_228576 (2677-2494) | |
| 560-722, gnl|echTel1|scaffold_322165 (88313-88144) | |
| 560-722, gnl|fr1|chrUn (238581787-238581964) | |
| 560-722, gnl|fr1|chrUn (190648459-190648641) | |
| 560-722, gnl|fr1|chrUn (83834801-83834610) | |
| 560-722, gnl|galGal2|chrUn (51283548-51283734) | |
| 560-722, gnl|galGal2|chrUn (51283741-51283544) | |
| 560-722, gnl|galGal2|chrZ (18296309-18296485) | |
| 560-722, gnl|hg17|chr19 (3061140-3061338) | |
| 560-722, gnl|Hg17|chr19 (3061152-3061314) | |
| 560-722, gnl|hg17|chr2 (132015847-132016027) | |
| 560-722, gnl|hg17|chr7 (65415041-65415227) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (409-235) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (410-226) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (217-414) | |
| 560-722, gnl|mm7|chr10 (81329424-81329607) | |
| 560-722, gnl|mm7|chr10 (81329432-81329616) | |
| 560-722, gnl|mm7|chr10 (81329620-81329428) | |
| 560-722, gnl|Mm7|chr10 (81329611-81329449) | |
| 560-722, gnl|monDom2|scaffold_209 (111973-111806) | |
| 560-722, gnl|monDom2|scaffold_209 (111981-111797) | |
| 560-722, gnl|monDom2|scaffold_209 (111788-111985) | |
| 560-722, gnl|oryCun1|scaffold_198154 (80674-80863) | |
| 560-722, gnl|oryCun1|scaffold_213664 (266666-266835) | |
| 560-722, gnl|oryCun1|scaffold_213664 (266853-266656) | |
| 560-722, gnl|panTro1|chr13 (17912318-17912498) | |
| 560-722, gnl|panTro1|chr20 (3195137-3195335) | |
| 560-722, gnl|panTro1|chr6 (67063561-67063747) | |
| 560-722, gnl|rheMac2|chr1 (127482837-127483110) | |
| 560-722, gnl|rheMac2|chr19 (2962580-2962776) | |
| 560-722, gnl|rheMac2|chr3 (58475591-58475408) | |
| 560-722, gnl|rn3|chr7 (9658380-9658206) | |
| 560-722, gnl|rn3|chr7 (9658381-9658197) | |
| 560-722, gnl|rn3|chr7 (9658193-9658385) | |
| 560-722, gnl|tetNig1|chr1 (10506317-10506509) | |
| 560-722, gnl|tetNig1|chr12 (7201312-7201492) | |
| 560-722, gnl|tetNig1|chr12 (7201315-7201501) | |
| 560-722, gnl|xenTro1|scaffold_153 (628235-628056) | |
| 560-722, gnl|xenTro1|scaffold_153 (628042-628239) | |
| 560-722, gnl|xenTro1|scaffold_320 (469618-469794) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-556, gnl|bosTau2|chr7 (16606106-16606634) | |
| 1-556, gnl|Hg17|chr19 (3087031-3087595) | |
| 1-556, gnl|Mm7|chr10 (81318809-81318315) | |
| 560-722, gnl|bosTau2|chr7 (16588708-16588870) | |
| 560-722, gnl|canFam2|chr20 (59135477-59135651) | |
| 560-722, gnl|canFam2|chr20 (59135476-59135662) | |
| 560-722, gnl|canFam2|chr20 (59135664-59135470) | |
| 560-722, gnl|danRer3|chr22 (18742111-18742304) | |
| 560-722, gnl|danRer3|chr5 (62560771-62560585) | |
| 560-722, gnl|danRer3|chr5 (62560756-62560580) | |
| 560-722, gnl|dasNov1|scaffold_6665 (71702-71893) | |
| 560-722, gnl|dasNov1|scaffold_7462 (13222-13375) | |
| 560-722, gnl|dasNov1|scaffold_7462 (13222-13387) | |
| 560-722, gnl|echTel1|scaffold_11376 (3420-3579) | |
| 560-722, gnl|echTel1|scaffold_228576 (2677-2494) | |
| 560-722, gnl|echTel1|scaffold_322165 (88313-88144) | |
| 560-722, gnl|fr1|chrUn (238581787-238581964) | |
| 560-722, gnl|fr1|chrUn (190648459-190648641) | |
| 560-722, gnl|fr1|chrUn (83834801-83834610) | |
| 560-722, gnl|galGal2|chrUn (51283548-51283734) | |
| 560-722, gnl|galGal2|chrUn (51283741-51283544) | |
| 560-722, gnl|galGal2|chrZ (18296309-18296485) | |
| 560-722, gnl|hg17|chr19 (3061140-3061338) | |
| 560-722, gnl|Hg17|chr19 (3061152-3061314) | |
| 560-722, gnl|hg17|chr2 (132015847-132016027) | |
| 560-722, gnl|hg17|chr7 (65415041-65415227) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (409-235) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (410-226) | |
| 560-722, gnl|loxAfr1|scaffold_126342 (217-414) | |
| 560-722, gnl|mm7|chr10 (81329424-81329607) | |
| 560-722, gnl|mm7|chr10 (81329432-81329616) | |
| 560-722, gnl|mm7|chr10 (81329620-81329428) | |
| 560-722, gnl|Mm7|chr10 (81329611-81329449) | |
| 560-722, gnl|monDom2|scaffold_209 (111973-111806) | |
| 560-722, gnl|monDom2|scaffold_209 (111981-111797) | |
| 560-722, gnl|monDom2|scaffold_209 (111788-111985) | |
| 560-722, gnl|oryCun1|scaffold_198154 (80674-80863) | |
| 560-722, gnl|oryCun1|scaffold_213664 (266666-266835) | |
| 560-722, gnl|oryCun1|scaffold_213664 (266853-266656) | |
| 560-722, gnl|panTro1|chr13 (17912318-17912498) | |
| 560-722, gnl|panTro1|chr20 (3195137-3195335) | |
| 560-722, gnl|panTro1|chr6 (67063561-67063747) | |
| 560-722, gnl|rheMac2|chr1 (127482837-127483110) | |
| 560-722, gnl|rheMac2|chr19 (2962580-2962776) | |
| 560-722, gnl|rheMac2|chr3 (58475591-58475408) | |
| 560-722, gnl|rn3|chr7 (9658380-9658206) | |
| 560-722, gnl|rn3|chr7 (9658381-9658197) | |
| 560-722, gnl|rn3|chr7 (9658193-9658385) | |
| 560-722, gnl|tetNig1|chr1 (10506317-10506509) | |
| 560-722, gnl|tetNig1|chr12 (7201312-7201492) | |
| 560-722, gnl|tetNig1|chr12 (7201315-7201501) | |
| 560-722, gnl|xenTro1|scaffold_153 (628235-628056) | |
| 560-722, gnl|xenTro1|scaffold_153 (628042-628239) | |
| 560-722, gnl|xenTro1|scaffold_320 (469618-469794) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.119646) |