Ss1.1-Liv1-LVR01A120087.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GAAGCCAGTCAGTCTGCGTTCGGCACTCCACGCCGCAGACCCAGGAGGATGAGGCTCGCT GTCCGTGCCCTGCTGGCCTGCGCGGTCCTGGGGCTGTCCCTGGCTGTCGCCCAAAAAACT GTAAGATGGTGCACCATTTCAAATCAGGAGGCCAATAAGTGCTCCAGTTTCCGTGAAAAC ATGAGTAAAGCCGTTAAGAATGGTCCTCTTGTCTCCTGTGTGAAAAAATCCTCCTACCTG GATTGCATCAAAGCCATCAGGGATAAAGAAGCAGATGCTGTGACACTGGATGCGGGTTTG GTATTTGAGGCAGGCCTGGCCCCCTACAACCTGAAGCCTGTTGTGGCAGAGTTCTATGGG CAGAAAGATAATCCACAAACCCATTATTACGCGGTGGCCGTGGTGAAGAAGGGCAGCAAC TTCCAGTGGAACCAGCTCCAAGGCAAGAGGTCCTGCCACACAGGCCTCGGCCGTTCTGCT GGATGGATCATCCCCATGGGATTACTTTACGATCAGCTGCCTGAGCCACGGAAACCTATT GAGAAAGCAGTGGCCAGTTTCTTCTCCAGCAGCTGCGTCCCCTGTGCGGATCCGGTGAAC TTCCCCAAACTGTGCCAACAGTGTGCTGGGAAAGGGGCTGAAAAGTGCGCCTGCTCCAAC CATGAACCGTACTTCGGCTACGCAGGTGCCTTCAATTGCCTGAAGGAGGATGCTGGGGAC GTGGCCTTTGTCAAGCACTCAACAGTATTGGAGAACCTGCCTGACAAGGCTGACAGGGAC CAGTACGAGCTGCTCTGCAGGGACAACACCAGGAGGCCTGTGGATGACTACGAGAACTGC TACCTGGCACAGGTCCCTTCCCACGCCGTCGTGGCCCGAAGCGTGGATGGTCAGGAGGAC TCAATCTGGGAGCTTCTCAACCAGGCCCAGGAGCATTTTGGCAGAGATAAATCTCCAGAC TTCCAGCTTTTCAGCTCCTCTCATGGGAAGGACCTGCTGTTTAAGGATTCTGCCAATGGG TTCTTAAAGATTCCCTCTAAGATGGACTCCTCGCTGTACCTGGGGTATCAGTATGTCACT GCTCTTCGGAATCTAAGAGAAGAAATAAGCCCTGATAGCTCAAAGAATGAATGCAAGAAG GTGAGGTGGTGTGCCATAGGCCACGAGGAGACGCAAAAATGCGATGCGTGGAGCATAAAC AGTGGTGGGAAAATAGAGTGTGTATCCGCAGAAAACACCGAAGACTGTATCGCCAAGATC GTGAAAGGAGAGGCTGATGCCATGAGCTTGGATGGAGGCTACATCTACATTGCGGGCAAG TGTGGTCTGGTGCCTGTCCTGGCAGAGAACTACAAAACTGAGGGTGAAAACTGTGTAAAC ACACCAGAGAAAGGGTATTTGGCTGTGGCTGTGGTTAAGAAATCATCAGGTCCTGATCTC AACTGGAACAATCTAAAGGGCAAGAAGTCCTGCCACACTGCAGTAGATAGAACTGCTGGC TGGAACATCCCCATGGGTCTGCTCTACAACAAGATTAACAGTTGTAAATTTGATCAGTTT TTCGGTGAAGGCTGTGCCCCTGGGTCTCAGCGAAATTCCAGTCTCTGTGCTCTGTGTATC GGCTCGGAACGTGCGCCTGGAAGGGAATGCTTAGCCAACAACCATGAGAGATACTATGGC TACACAGGGGCTTTCAGGTGTCTGGTTGAGAAGGGAGATGTGGCCTTTGTGAAGGATCAG GTTGTCCAGCAGAACACTGACGGAAAAAACAAGGATGATTGGGCAAAAGATCTGAAGCAG ATGGATTTTGAGCTGCTGTGCCAGAACGGCGCCAGGGAGCCTGTGGATAATGCTGAGAAC TGCCACCTGGCCAGAGCCCCAAACCATGCTGTGGTTGCACGGGATGATAAAGTGACCTGT GTTGCTGAGGAGTTACTTAAACAGCAGGCTCAATTTGGAAGACATGTAACCGACTGCTCA AGCAGCTTTTGCATGTTCAAGTCAAATACCAAGGACCTCCTCTTCAGGGATGACACCCAA TGTTTGGCCAGAGTTGGCAAAACTACGTATGAATCCTACTTAGGAGCCGACTACATCACG GCTGTGGCTAACCTGAGAAAATGCTCAACCTCAAAACTCCTGGAAGCCTGTACTTTCCAC AGTGCTAAAAATCCAAGAGTGGAGACTACCACCTGATGGAGACGGGAGCTCACGGGACCC ATAAGCTTCCCTCTGGTTGTGCTGGCCTGAGTGGTTTGGTTGCCTTCACACTTTCGTGGT GGCACCTCTGCAGGACAAAAAAAAAATAAAAATTATTATCATTTTTGTCTTTTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GAAGCCAGTCAGTCTGCGTTCGGCACTCCACGCCGCAGACCCAGGAGGATGAGGCTCGCT GTCCGTGCCCTGCTGGCCTGCGCGGTCCTGGGGCTGTCCCTGGCTGTCGCCCAAAAAACT GTAAGATGGTGCACCATTTCAAATCAGGAGGCCAATAAGTGCTCCAGTTTCCGTGAAAAC ATGAGTAAAGCCGTTAAGAATGGTCCTCTTGTCTCCTGTGTGAAAAAATCCTCCTACCTG GATTGCATCAAAGCCATCAGGGATAAAGAAGCAGATGCTGTGACACTGGATGCGGGTTTG GTATTTGAGGCAGGCCTGGCCCCCTACAACCTGAAGCCTGTTGTGGCAGAGTTCTATGGG CAGAAAGATAATCCACAAACCCATTATTACGCGGTGGCCGTGGTGAAGAAGGGCAGCAAC TTCCAGTGGAACCAGCTCCAAGGCAAGAGGTCCTGCCACACAGGCCTCGGCCGTTCTGCT GGATGGATCATCCCCATGGGATTACTTTACGATCAGCTGCCTGAGCCACGGAAACCTATT GAGAAAGCAGTGGCCAGTTTCTTCTCCAGCAGCTGCGTCCCCTGTGCGGATCCGGTGAAC TTCCCCAAACTGTGCCAACAGTGTGCTGGGAAAGGGGCTGAAAAGTGCGCCTGCTCCAAC CATGAACCGTACTTCGGCTACGCAGGTGCCTTCAATTGCCTGAAGGAGGATGCTGGGGAC GTGGCCTTTGTCAAGCACTCAACAGTATTGGAGAACCTGCCTGACAAGGCTGACAGGGAC CAGTACGAGCTGCTCTGCAGGGACAACACCAGGAGGCCTGTGGATGACTACGAGAACTGC TACCTGGCACAGGTCCCTTCCCACGCCGTCGTGGCCCGAAGCGTGGATGGTCAGGAGGAC TCAATCTGGGAGCTTCTCAACCAGGCCCAGGAGCATTTTGGCAGAGATAAATCTCCAGAC TTCCAGCTTTTCAGCTCCTCTCATGGGAAGGACCTGCTGTTTAAGGATTCTGCCAATGGG TTCTTAAAGATTCCCTCTAAGATGGACTCCTCGCTGTACCTGGGGTATCAGTATGTCACT GCTCTTCGGAATCTAAGAGAAGAAATAAGCCCTGATAGCTCAAAGAATGAATGCAAGAAG GTGAGGTGGTGTGCCATAGGCCACGAGGAGACGCAAAAATGCGATGCGTGGAGCATAAAC AGTGGTGGGAAAATAGAGTGTGTATCCGCAGAAAACACCGAAGACTGTATCGCCAAGATC GTGAAAGGAGAGGCTGATGCCATGAGCTTGGATGGAGGCTACATCTACATTGCGGGCAAG TGTGGTCTGGTGCCTGTCCTGGCAGAGAACTACAAAACTGAGGGTGAAAACTGTGTAAAC ACACCAGAGAAAGGGTATTTGGCTGTGGCTGTGGTTAAGAAATCATCAGGTCCTGATCTC AACTGGAACAATCTAAAGGGCAAGAAGTCCTGCCACACTGCAGTAGATAGAACTGCTGGC TGGAACATCCCCATGGGTCTGCTCTACAACAAGATTAACAGTTGTAAATTTGATCAGTTT TTCGGTGAAGGCTGTGCCCCTGGGTCTCAGCGAAATTCCAGTCTCTGTGCTCTGTGTATC GGCTCGGAACGTGCGCCTGGAAGGGAATGCTTAGCCAACAACCATGAGAGATACTATGGC TACACAGGGGCTTTCAGGTGTCTGGTTGAGAAGGGAGATGTGGCCTTTGTGAAGGATCAG GTTGTCCAGCAGAACACTGACGGAAAAAACAAGGATGATTGGGCAAAAGATCTGAAGCAG ATGGATTTTGAGCTGCTGTGCCAGAACGGCGCCAGGGAGCCTGTGGATAATGCTGAGAAC TGCCACCTGGCCAGAGCCCCAAACCATGCTGTGGTTGCACGGGATGATAAAGTGACCTGT GTTGCTGAGGAGTTACTTAAACAGCAGGCTCAATTTGGAAGACATGTAACCGACTGCTCA AGCAGCTTTTGCATGTTCAAGTCAAATACCAAGGACCTCCTCTTCAGGGATGACACCCAA TGTTTGGCCAGAGTTGGCAAAACTACGTATGAATCCTACTTAGGAGCCGACTACATCACG GCTGTGGCTAACCTGAGAAAATGCTCAACCTCAAAACTCCTGGAAGCCTGTACTTTCCAC AGTGCTAAAAATCCAAGAGTGGAGACTACCACCTGATGGAGACGGGAGCTCACGGGACCC ATAAGCTTCCCTCTGGTTGTGCTGGCCTGAGTGGTTTGGTTGCCTTCACACTTTCGTGGT GGCACCTCTGCAGGACAAAAAAAAAATAAAAATTATTATCATTTTTGTCTTTTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
413-502, + strand, RNAz p=0.681469 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
413-502, + strand, RNAz p=0.681469 |
Aligned organism(s): 79 entry(ies) | More info |
Aligned organism(s): 79 entry(ies) | Help | Less info |
87-258, gnl|bosTau2|chr1 (88667369-88667198) | |
87-258, gnl|canFam2|chr23 (33714030-33714287) | |
87-258, gnl|dasNov1|scaffold_130386 (5101-5372) | |
87-258, gnl|echTel1|scaffold_325115 (55224-54989) | |
87-258, gnl|hg17|chr3 (134949881-134950156) | |
87-258, gnl|Hg17|chr3 (134949949-134950123) | |
87-258, gnl|mm7|chr9 (102942247-102941977) | |
87-258, gnl|Mm7|chr9 (102942176-102942002) | |
87-258, gnl|monDom2|scaffold_24 (26871720-26872010) | |
87-258, gnl|oryCun1|scaffold_174606 (34484-34720) | |
87-258, gnl|panTro1|chr2 (137112583-137112859) | |
87-258, gnl|rheMac2|chr2 (153999728-153999452) | |
87-258, gnl|rn3|chr8 (108261877-108261607) | |
263-368, gnl|bosTau2|chr1 (88659675-88659570) | |
263-368, gnl|Hg17|chr3 (134955138-134955243) | |
263-368, gnl|Mm7|chr9 (102941048-102940943) | |
371-502, gnl|bosTau2|chr1 (88728547-88728415) | |
371-502, gnl|canFam2|chr23 (33661807-33661982) | |
371-502, gnl|dasNov1|scaffold_110664 (1276-1085) | |
371-502, gnl|echTel1|scaffold_323647 (50671-50481) | |
371-502, gnl|fr1|chrUn (234792882-234792707) | |
371-502, gnl|hg17|chr3 (134894284-134894458) | |
371-502, gnl|Hg17|chr3 (134894316-134894447) | |
371-502, gnl|loxAfr1|scaffold_152546 (1407-1216) | |
371-502, gnl|mm7|chr9 (102993671-102993496) | |
371-502, gnl|Mm7|chr9 (102993637-102993505) | |
371-502, gnl|oryCun1|scaffold_145131 (7799-7636) | |
371-502, gnl|panTro1|chr2 (137036639-137036813) | |
371-502, gnl|rheMac2|chr2 (154046584-154046410) | |
371-502, gnl|rn3|chr8 (108313239-108313064) | |
371-502, gnl|tetNig1|chr15 (6077313-6077473) | |
537-714, gnl|bosTau2|chr1 (88657784-88657608) | |
537-714, gnl|canFam2|chr23 (33719366-33719631) | |
537-714, gnl|dasNov1|scaffold_110664 (810-546) | |
537-714, gnl|echTel1|scaffold_104857 (2158-2418) | |
537-714, gnl|hg17|chr3 (134956844-134957095) | |
537-714, gnl|Hg17|chr3 (134956895-134957055) | |
537-714, gnl|loxAfr1|scaffold_37469 (5688-5945) | |
537-714, gnl|mm7|chr9 (102939327-102939096) | |
537-714, gnl|Mm7|chr9 (102939288-102939131) | |
537-714, gnl|monDom2|scaffold_24 (26874347-26874594) | |
537-714, gnl|oryCun1|scaffold_174606 (39391-39638) | |
537-714, gnl|panTro1|chr2 (137119354-137119605) | |
537-714, gnl|rheMac2|chr2 (153993176-153992925) | |
537-714, gnl|rn3|chr8 (108257122-108256883) | |
539-698, gnl|bosTau2|chr1 (88727207-88727049) | |
539-698, gnl|Hg17|chr3 (134895750-134895907) | |
539-698, gnl|Mm7|chr9 (102991714-102991556) | |
751-931, gnl|bosTau2|chr1 (88722532-88722352) | |
751-931, gnl|Hg17|chr3 (134900986-134901166) | |
751-931, gnl|Mm7|chr9 (102986769-102986589) | |
1110-1263, gnl|bosTau2|chr1 (88653623-88653473) | |
1110-1263, gnl|Hg17|chr3 (134960718-134960871) | |
1110-1263, gnl|Mm7|chr9 (102935146-102934996) | |
1391-1598, gnl|bosTau2|chr1 (88713477-88713273) | |
1391-1598, gnl|Hg17|chr3 (134911052-134911279) | |
1391-1598, gnl|Mm7|chr9 (102977291-102977068) | |
1392-1558, gnl|bosTau2|chr1 (88649093-88648930) | |
1392-1558, gnl|Hg17|chr3 (134967818-134967981) | |
1392-1558, gnl|Mm7|chr9 (102931623-102931461) | |
1762-1948, gnl|bosTau2|chr1 (88639231-88639045) | |
1762-1948, gnl|canFam2|chr23 (33734492-33734639) | |
1762-1948, gnl|dasNov1|scaffold_9629 (53585-53438) | |
1762-1948, gnl|echTel1|scaffold_325115 (30396-30241) | |
1762-1948, gnl|fr1|chrUn (234790363-234790218) | |
1762-1948, gnl|hg17|chr3 (134976956-134977105) | |
1762-1948, gnl|Hg17|chr3 (134976974-134977160) | |
1762-1948, gnl|loxAfr1|scaffold_37469 (20976-21124) | |
1762-1948, gnl|mm7|chr9 (102926120-102925971) | |
1762-1948, gnl|Mm7|chr9 (102926100-102925914) | |
1762-1948, gnl|monDom2|scaffold_24 (26892530-26892679) | |
1762-1948, gnl|oryCun1|scaffold_174606 (57922-58071) | |
1762-1948, gnl|panTro1|chr2 (137138499-137138648) | |
1762-1948, gnl|rheMac2|chr2 (153973249-153973100) | |
1762-1948, gnl|rn3|chr8 (108241017-108240868) | |
1762-1948, gnl|tetNig1|chr1 (16721568-16721686) | |
2129-2340, gnl|bosTau2|chr1 (88630758-88630549) | |
2129-2340, gnl|Hg17|chr3 (134980122-134980338) | |
2129-2340, gnl|Mm7|chr9 (102923187-102922968) |
Aligned organism(s): 79 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
87-258, gnl|bosTau2|chr1 (88667369-88667198) | |
87-258, gnl|canFam2|chr23 (33714030-33714287) | |
87-258, gnl|dasNov1|scaffold_130386 (5101-5372) | |
87-258, gnl|echTel1|scaffold_325115 (55224-54989) | |
87-258, gnl|hg17|chr3 (134949881-134950156) | |
87-258, gnl|Hg17|chr3 (134949949-134950123) | |
87-258, gnl|mm7|chr9 (102942247-102941977) | |
87-258, gnl|Mm7|chr9 (102942176-102942002) | |
87-258, gnl|monDom2|scaffold_24 (26871720-26872010) | |
87-258, gnl|oryCun1|scaffold_174606 (34484-34720) | |
87-258, gnl|panTro1|chr2 (137112583-137112859) | |
87-258, gnl|rheMac2|chr2 (153999728-153999452) | |
87-258, gnl|rn3|chr8 (108261877-108261607) | |
263-368, gnl|bosTau2|chr1 (88659675-88659570) | |
263-368, gnl|Hg17|chr3 (134955138-134955243) | |
263-368, gnl|Mm7|chr9 (102941048-102940943) | |
371-502, gnl|bosTau2|chr1 (88728547-88728415) | |
371-502, gnl|canFam2|chr23 (33661807-33661982) | |
371-502, gnl|dasNov1|scaffold_110664 (1276-1085) | |
371-502, gnl|echTel1|scaffold_323647 (50671-50481) | |
371-502, gnl|fr1|chrUn (234792882-234792707) | |
371-502, gnl|hg17|chr3 (134894284-134894458) | |
371-502, gnl|Hg17|chr3 (134894316-134894447) | |
371-502, gnl|loxAfr1|scaffold_152546 (1407-1216) | |
371-502, gnl|mm7|chr9 (102993671-102993496) | |
371-502, gnl|Mm7|chr9 (102993637-102993505) | |
371-502, gnl|oryCun1|scaffold_145131 (7799-7636) | |
371-502, gnl|panTro1|chr2 (137036639-137036813) | |
371-502, gnl|rheMac2|chr2 (154046584-154046410) | |
371-502, gnl|rn3|chr8 (108313239-108313064) | |
371-502, gnl|tetNig1|chr15 (6077313-6077473) | |
537-714, gnl|bosTau2|chr1 (88657784-88657608) | |
537-714, gnl|canFam2|chr23 (33719366-33719631) | |
537-714, gnl|dasNov1|scaffold_110664 (810-546) | |
537-714, gnl|echTel1|scaffold_104857 (2158-2418) | |
537-714, gnl|hg17|chr3 (134956844-134957095) | |
537-714, gnl|Hg17|chr3 (134956895-134957055) | |
537-714, gnl|loxAfr1|scaffold_37469 (5688-5945) | |
537-714, gnl|mm7|chr9 (102939327-102939096) | |
537-714, gnl|Mm7|chr9 (102939288-102939131) | |
537-714, gnl|monDom2|scaffold_24 (26874347-26874594) | |
537-714, gnl|oryCun1|scaffold_174606 (39391-39638) | |
537-714, gnl|panTro1|chr2 (137119354-137119605) | |
537-714, gnl|rheMac2|chr2 (153993176-153992925) | |
537-714, gnl|rn3|chr8 (108257122-108256883) | |
539-698, gnl|bosTau2|chr1 (88727207-88727049) | |
539-698, gnl|Hg17|chr3 (134895750-134895907) | |
539-698, gnl|Mm7|chr9 (102991714-102991556) | |
751-931, gnl|bosTau2|chr1 (88722532-88722352) | |
751-931, gnl|Hg17|chr3 (134900986-134901166) | |
751-931, gnl|Mm7|chr9 (102986769-102986589) | |
1110-1263, gnl|bosTau2|chr1 (88653623-88653473) | |
1110-1263, gnl|Hg17|chr3 (134960718-134960871) | |
1110-1263, gnl|Mm7|chr9 (102935146-102934996) | |
1391-1598, gnl|bosTau2|chr1 (88713477-88713273) | |
1391-1598, gnl|Hg17|chr3 (134911052-134911279) | |
1391-1598, gnl|Mm7|chr9 (102977291-102977068) | |
1392-1558, gnl|bosTau2|chr1 (88649093-88648930) | |
1392-1558, gnl|Hg17|chr3 (134967818-134967981) | |
1392-1558, gnl|Mm7|chr9 (102931623-102931461) | |
1762-1948, gnl|bosTau2|chr1 (88639231-88639045) | |
1762-1948, gnl|canFam2|chr23 (33734492-33734639) | |
1762-1948, gnl|dasNov1|scaffold_9629 (53585-53438) | |
1762-1948, gnl|echTel1|scaffold_325115 (30396-30241) | |
1762-1948, gnl|fr1|chrUn (234790363-234790218) | |
1762-1948, gnl|hg17|chr3 (134976956-134977105) | |
1762-1948, gnl|Hg17|chr3 (134976974-134977160) | |
1762-1948, gnl|loxAfr1|scaffold_37469 (20976-21124) | |
1762-1948, gnl|mm7|chr9 (102926120-102925971) | |
1762-1948, gnl|Mm7|chr9 (102926100-102925914) | |
1762-1948, gnl|monDom2|scaffold_24 (26892530-26892679) | |
1762-1948, gnl|oryCun1|scaffold_174606 (57922-58071) | |
1762-1948, gnl|panTro1|chr2 (137138499-137138648) | |
1762-1948, gnl|rheMac2|chr2 (153973249-153973100) | |
1762-1948, gnl|rn3|chr8 (108241017-108240868) | |
1762-1948, gnl|tetNig1|chr1 (16721568-16721686) | |
2129-2340, gnl|bosTau2|chr1 (88630758-88630549) | |
2129-2340, gnl|Hg17|chr3 (134980122-134980338) | |
2129-2340, gnl|Mm7|chr9 (102923187-102922968) |
Expressed library(ies): 13 entry(ies) | More info |
Expressed library(ies): 13 entry(ies) | Help | Less info |
eli (29.1483) | |
cli (9.93276) | |
lun (6.32054) | |
cbr (3.58331) | |
fli (3.04321) | |
hyp (2.14255) | |
elu (1.92678) | |
spc (1.36039) | |
cki (0.826173) | |
cbe (0.478469) | |
ese (0.253004) | |
fty (0.17584) | |
fhi (0.169578) |
Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
eli (29.1483) | |
cli (9.93276) | |
lun (6.32054) | |
cbr (3.58331) | |
fli (3.04321) | |
hyp (2.14255) | |
elu (1.92678) | |
spc (1.36039) | |
cki (0.826173) | |
cbe (0.478469) | |
ese (0.253004) | |
fty (0.17584) | |
fhi (0.169578) |