Ss1.1-Liv1-LVR01B050083.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCGGCCATGCCAGGCCCCGGGGCCGTGTGTGCGCAGCGGGCGGCGGCGGCGCGGCCC GGGCGGCAGGCGCGGCAGCGGCGCTAGCCCGGCCCTCAGCCCCTCCTCGCGGTCCCGCCT CCGCCTCTCCCACCTTGCCCGGTATGGATCTGCCCGTGGGCCCGGGCGCGGCGGGGCCCA GCAACGTCCCGGCCTTCCTGACCAAGCTCTGGACTCTCGTGAGCGACCCGGACACGGACG CGCTTATCTGCTGGAGCCCGAGCGGGAGCAGCTTCCATGTGCTCGACCAGGGCCAGTTCG CCAAGGAGGTGCTGCCCAAGTACTTCAAGCACAGCAACATGGCCAGCTTCGTGCGGCAGC TCAACATGTATGGCTTCCGGAAGGTGGTGCACATCGAGCAGGGCGGCCTGGTCAAGCCGG AGAGGGACGACACCGAGTTCCAGCACCCCTGCTTCCTGCGCGGCCAGGAGCAGCTCCTGG AGAACATCAAGAGGAAAGTGACCAGCGTGTCCACCCTGAGGAGTGAGGACATAAAGATTC GCCAGGACAGTGTCACCAAGCTCCTGACCGACGTGCAGCTGATGAAGGGGAAGCAAGAGA GCATGGATTCCAAACTGCTGGCCATGAAGCATGAGAACGAGGCCCTGTGGCGGGAGGTGG CCGGCCTGCGGCAGAAGCACGCGCAGCAGCAGAAAGTCGTCAACAAGCTCATCCAGTTCC TCATCTCGCTGGTGCAGTCCAACAGGATCCTGGGGGTGAAGAGAAAGATCCCCCTGATGC TGAACGACGCCAGCTCCGCACATTCCATGCCCAAATACGGCCGGCAGTACTCTCTGGAGC ACATCCACGGCCCGGGCCCCTACACGGCTCCAGCCCCAGCCTACAGCGGCCCCAGCCTCT ACGCCCCAGACGCTGTTGCCAGCTCCGGACCCATCATCTCCGACGTCACTGAGCTGGCCC CCAGCAGCCCCTTGGCCTCCCCCGGCGGCAGCGTGGACGAGGAAAGGCCCCTGTCCGGCA GCCCCCTGGTTCGAGTCAAGGAGGAGCCCCCCAGCCCACCTCGCAGCCCCCGGGCAGAGG CTGCTGGTCCCGGGCACCCGTCCTCCATCGTGGAGACGCCCCTGTCCCCCACCGCCCTCA TTGACTCCATCCTGCGGGAGAGCGAGCCTGCGCCTACCGCCTCGGCCACCCTGCTCCCGG ACACGGGGGGCCACCCGCCCTCGCCCCTACCCACCTCGGCCCCCGAGAAGTGCCTCAGCG TAGCCTGCCTGGACAAGACTGAGCTCAGTGACCACTTGGACGCCATGGACTCCAACCTGG ACAACCTGCAGACCATGCTGTCGAGCCACGGCTTCAGTGTGGACACCAGCGCCCTGCTGG ACCTGTTCAGCCCCTCGGTGACGGTGCCTGACATGAACCTGCCCGACCTTGACAGCAGCC TGGCCAGCATCCAGGAGCTCCTCTCTCCCCAGGAGCCCCCAAGGCCCCTCGAGGCAGAGA GCAGCAGCCCTGACTCAGGGAAGCAGCTGGTGCACTACACGGCGCAGCCCCTGCTCCTGG TGGACCCGGGCTCCGTGGACGTGGGGAGCAGCGACCTGCCGGTGCTCTTCGAGCTCGGGG AGGGCCCCTACTTCTCCGAGGGGGACGACTACACAGACGACCCCACCATCTCCCTGCTGA CGGGTTCTGAGCCCCCCAAAGCCAAGGACCCCACTGTCTCCTAGAGGCCCCAGGGGGAGG GCAGGCCTCCCGGTGCAGCGCTGGCCCGGGCCCCACACGCCTCACTCGGACTGACCAGCA CACGGGTGTTCATAGAATTGTATTTTGGATTTTTACACGAGACTCCCCCTTCACCTCCCG CACAGATAGACAGATATACGCGTGGACAGACGGACGGACGGACGAGACAGGCAGAGATCT ATAAACGACAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCGGCCATGCCAGGCCCCGGGGCCGTGTGTGCGCAGCGGGCGGCGGCGGCGCGGCCC GGGCGGCAGGCGCGGCAGCGGCGCTAGCCCGGCCCTCAGCCCCTCCTCGCGGTCCCGCCT CCGCCTCTCCCACCTTGCCCGGTATGGATCTGCCCGTGGGCCCGGGCGCGGCGGGGCCCA GCAACGTCCCGGCCTTCCTGACCAAGCTCTGGACTCTCGTGAGCGACCCGGACACGGACG CGCTTATCTGCTGGAGCCCGAGCGGGAGCAGCTTCCATGTGCTCGACCAGGGCCAGTTCG CCAAGGAGGTGCTGCCCAAGTACTTCAAGCACAGCAACATGGCCAGCTTCGTGCGGCAGC TCAACATGTATGGCTTCCGGAAGGTGGTGCACATCGAGCAGGGCGGCCTGGTCAAGCCGG AGAGGGACGACACCGAGTTCCAGCACCCCTGCTTCCTGCGCGGCCAGGAGCAGCTCCTGG AGAACATCAAGAGGAAAGTGACCAGCGTGTCCACCCTGAGGAGTGAGGACATAAAGATTC GCCAGGACAGTGTCACCAAGCTCCTGACCGACGTGCAGCTGATGAAGGGGAAGCAAGAGA GCATGGATTCCAAACTGCTGGCCATGAAGCATGAGAACGAGGCCCTGTGGCGGGAGGTGG CCGGCCTGCGGCAGAAGCACGCGCAGCAGCAGAAAGTCGTCAACAAGCTCATCCAGTTCC TCATCTCGCTGGTGCAGTCCAACAGGATCCTGGGGGTGAAGAGAAAGATCCCCCTGATGC TGAACGACGCCAGCTCCGCACATTCCATGCCCAAATACGGCCGGCAGTACTCTCTGGAGC ACATCCACGGCCCGGGCCCCTACACGGCTCCAGCCCCAGCCTACAGCGGCCCCAGCCTCT ACGCCCCAGACGCTGTTGCCAGCTCCGGACCCATCATCTCCGACGTCACTGAGCTGGCCC CCAGCAGCCCCTTGGCCTCCCCCGGCGGCAGCGTGGACGAGGAAAGGCCCCTGTCCGGCA GCCCCCTGGTTCGAGTCAAGGAGGAGCCCCCCAGCCCACCTCGCAGCCCCCGGGCAGAGG CTGCTGGTCCCGGGCACCCGTCCTCCATCGTGGAGACGCCCCTGTCCCCCACCGCCCTCA TTGACTCCATCCTGCGGGAGAGCGAGCCTGCGCCTACCGCCTCGGCCACCCTGCTCCCGG ACACGGGGGGCCACCCGCCCTCGCCCCTACCCACCTCGGCCCCCGAGAAGTGCCTCAGCG TAGCCTGCCTGGACAAGACTGAGCTCAGTGACCACTTGGACGCCATGGACTCCAACCTGG ACAACCTGCAGACCATGCTGTCGAGCCACGGCTTCAGTGTGGACACCAGCGCCCTGCTGG ACCTGTTCAGCCCCTCGGTGACGGTGCCTGACATGAACCTGCCCGACCTTGACAGCAGCC TGGCCAGCATCCAGGAGCTCCTCTCTCCCCAGGAGCCCCCAAGGCCCCTCGAGGCAGAGA GCAGCAGCCCTGACTCAGGGAAGCAGCTGGTGCACTACACGGCGCAGCCCCTGCTCCTGG TGGACCCGGGCTCCGTGGACGTGGGGAGCAGCGACCTGCCGGTGCTCTTCGAGCTCGGGG AGGGCCCCTACTTCTCCGAGGGGGACGACTACACAGACGACCCCACCATCTCCCTGCTGA CGGGTTCTGAGCCCCCCAAAGCCAAGGACCCCACTGTCTCCTAGAGGCCCCAGGGGGAGG GCAGGCCTCCCGGTGCAGCGCTGGCCCGGGCCCCACACGCCTCACTCGGACTGACCAGCA CACGGGTGTTCATAGAATTGTATTTTGGATTTTTACACGAGACTCCCCCTTCACCTCCCG CACAGATAGACAGATATACGCGTGGACAGACGGACGGACGGACGAGACAGGCAGAGATCT ATAAACGACAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-260, gnl|bosTau2|chr14 (36419-36159) | |
| 1-260, gnl|Hg17|chr8 (145486106-145486364) | |
| 1-260, gnl|Mm7|chr15 (76560014-76560270) | |
| 311-976, gnl|bosTau2|chr23 (5891155-5891804) | |
| 311-976, gnl|Hg17|chr8 (145503450-145506303) | |
| 311-976, gnl|Mm7|chr15 (76579007-76580816) | |
| 370-509, gnl|bosTau2|chr14 (21337-21198) | |
| 370-509, gnl|canFam2|chr13 (40771021-40771126) | |
| 370-509, gnl|danRer3|chr19 (65538963-65539068) | |
| 370-509, gnl|dasNov1|scaffold_17244 (8645-8745) | |
| 370-509, gnl|echTel1|scaffold_298013 (1230-1125) | |
| 370-509, gnl|fr1|chrUn (39594988-39594883) | |
| 370-509, gnl|galGal2|chr2 (147373573-147373468) | |
| 370-509, gnl|hg17|chr8 (145503950-145504055) | |
| 370-509, gnl|Hg17|chr8 (145503949-145504088) | |
| 370-509, gnl|loxAfr1|scaffold_34240 (1553-1448) | |
| 370-509, gnl|mm7|chr15 (76579007-76579112) | |
| 370-509, gnl|Mm7|chr15 (76579006-76579145) | |
| 370-509, gnl|monDom2|scaffold_79 (2838974-2839079) | |
| 370-509, gnl|oryCun1|scaffold_158322 (701-596) | |
| 370-509, gnl|panTro1|chr18 (60016843-60016948) | |
| 370-509, gnl|rheMac2|chr8 (146935962-146936067) | |
| 370-509, gnl|rn3|chr7 (114580679-114580784) | |
| 370-509, gnl|tetNig1|chrUn_random (10329024-10329129) | |
| 370-509, gnl|xenTro1|scaffold_1404 (155842-155947) | |
| 1001-1277, gnl|bosTau2|chr14 (19005-18729) | |
| 1001-1277, gnl|Hg17|chr8 (145506451-145506739) | |
| 1001-1277, gnl|Mm7|chr15 (76580969-76581245) | |
| 1760-1929, gnl|bosTau2|chr14 (17329-17166) | |
| 1760-1929, gnl|canFam2|chr13 (40775617-40775828) | |
| 1760-1929, gnl|canFam2|chr13 (40775828-40775617) | |
| 1760-1929, gnl|echTel1|scaffold_61515 (835-656) | |
| 1760-1929, gnl|echTel1|scaffold_61515 (656-853) | |
| 1760-1929, gnl|hg17|chr8 (145508993-145509211) | |
| 1760-1929, gnl|Hg17|chr8 (145509011-145509180) | |
| 1760-1929, gnl|hg17|chr8_random (420929-421167) | |
| 1760-1929, gnl|mm7|chr15 (76583386-76583626) | |
| 1760-1929, gnl|mm7|chr15 (76583626-76583360) | |
| 1760-1929, gnl|monDom2|scaffold_79 (2860105-2860373) | |
| 1760-1929, gnl|monDom2|scaffold_79 (2860373-2860084) | |
| 1760-1929, gnl|oryCun1|scaffold_194103 (3795-3591) | |
| 1760-1929, gnl|oryCun1|scaffold_194103 (3591-3806) | |
| 1760-1929, gnl|panTro1|chr7 (148758136-148758350) | |
| 1760-1929, gnl|panTro1|chr7 (148758350-148758116) | |
| 1760-1929, gnl|rheMac2|chr8 (146940875-146941103) | |
| 1760-1929, gnl|rheMac2|chr8 (146941103-146940855) | |
| 1760-1929, gnl|rn3|chr7 (114584965-114585181) | |
| 1760-1929, gnl|rn3|chr7 (114585181-114584939) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-260, gnl|bosTau2|chr14 (36419-36159) | |
| 1-260, gnl|Hg17|chr8 (145486106-145486364) | |
| 1-260, gnl|Mm7|chr15 (76560014-76560270) | |
| 311-976, gnl|bosTau2|chr23 (5891155-5891804) | |
| 311-976, gnl|Hg17|chr8 (145503450-145506303) | |
| 311-976, gnl|Mm7|chr15 (76579007-76580816) | |
| 370-509, gnl|bosTau2|chr14 (21337-21198) | |
| 370-509, gnl|canFam2|chr13 (40771021-40771126) | |
| 370-509, gnl|danRer3|chr19 (65538963-65539068) | |
| 370-509, gnl|dasNov1|scaffold_17244 (8645-8745) | |
| 370-509, gnl|echTel1|scaffold_298013 (1230-1125) | |
| 370-509, gnl|fr1|chrUn (39594988-39594883) | |
| 370-509, gnl|galGal2|chr2 (147373573-147373468) | |
| 370-509, gnl|hg17|chr8 (145503950-145504055) | |
| 370-509, gnl|Hg17|chr8 (145503949-145504088) | |
| 370-509, gnl|loxAfr1|scaffold_34240 (1553-1448) | |
| 370-509, gnl|mm7|chr15 (76579007-76579112) | |
| 370-509, gnl|Mm7|chr15 (76579006-76579145) | |
| 370-509, gnl|monDom2|scaffold_79 (2838974-2839079) | |
| 370-509, gnl|oryCun1|scaffold_158322 (701-596) | |
| 370-509, gnl|panTro1|chr18 (60016843-60016948) | |
| 370-509, gnl|rheMac2|chr8 (146935962-146936067) | |
| 370-509, gnl|rn3|chr7 (114580679-114580784) | |
| 370-509, gnl|tetNig1|chrUn_random (10329024-10329129) | |
| 370-509, gnl|xenTro1|scaffold_1404 (155842-155947) | |
| 1001-1277, gnl|bosTau2|chr14 (19005-18729) | |
| 1001-1277, gnl|Hg17|chr8 (145506451-145506739) | |
| 1001-1277, gnl|Mm7|chr15 (76580969-76581245) | |
| 1760-1929, gnl|bosTau2|chr14 (17329-17166) | |
| 1760-1929, gnl|canFam2|chr13 (40775617-40775828) | |
| 1760-1929, gnl|canFam2|chr13 (40775828-40775617) | |
| 1760-1929, gnl|echTel1|scaffold_61515 (835-656) | |
| 1760-1929, gnl|echTel1|scaffold_61515 (656-853) | |
| 1760-1929, gnl|hg17|chr8 (145508993-145509211) | |
| 1760-1929, gnl|Hg17|chr8 (145509011-145509180) | |
| 1760-1929, gnl|hg17|chr8_random (420929-421167) | |
| 1760-1929, gnl|mm7|chr15 (76583386-76583626) | |
| 1760-1929, gnl|mm7|chr15 (76583626-76583360) | |
| 1760-1929, gnl|monDom2|scaffold_79 (2860105-2860373) | |
| 1760-1929, gnl|monDom2|scaffold_79 (2860373-2860084) | |
| 1760-1929, gnl|oryCun1|scaffold_194103 (3795-3591) | |
| 1760-1929, gnl|oryCun1|scaffold_194103 (3591-3806) | |
| 1760-1929, gnl|panTro1|chr7 (148758136-148758350) | |
| 1760-1929, gnl|panTro1|chr7 (148758350-148758116) | |
| 1760-1929, gnl|rheMac2|chr8 (146940875-146941103) | |
| 1760-1929, gnl|rheMac2|chr8 (146941103-146940855) | |
| 1760-1929, gnl|rn3|chr7 (114584965-114585181) | |
| 1760-1929, gnl|rn3|chr7 (114585181-114584939) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ese (0.253004) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.253004) | |
| fli (0.202881) | |
| nbm (0.198649) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) |