Ss1.1-Liv1-LVR01B060083.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTCTCCCTTTGTGCTTTTTTATTGATTATGGCGGGGGGGGG GTGTCAGTGAAACTTAAAGTCGTATGTATTCCCTGGTAATGCCCCTTCCGCTTGCTCCTC CCGCCAGATGGCTGAAAAAGAACATGCGACCCGCCGAGGACCTGGACTCGGTCACCCAGA AGCTGGCGGTGTTTGGGCCGATCAAGTCTGTGACTCTGTGTGGACGGCAGAGTGCTGTCG TGGTTTTCGAAGACACGGTCTCAGCCTGCCACGCGGTGACGGCTTTTCAGAGCAGGGTGC CAGGCACGATGTTTCGGTGCGCCTGGCAGCAGCGGTTCATGGCCAAGGACGTGAGCCTGC CCCCTGCCCCCCACCTGCCTCCCTTCTCAAAGCCCGTTTCACATCCCTTTTCAGCAGGGC TCCGCTGAAATAAAATCACCCCACCTGCTAGTTAGCGCTGAAAAAAAGGCACGATGACGC CTCTTTGGTTCGGCAACTGGCACTCAGAACCAGCTGCTGGGAAGTCCTGGGCTGTGGCAG GCGTCATAGCTTCGCCTTCTTGGACAAGAAGGCTACGATGGCCGTGATGCACTCATCGGA CACCCACCTCTCTGCCAGGACTCTGCTTTCCTCCGCATTAACCGCATGCAACTTCTCCTT CTCCTGATGCCTCATGAGCCGTTTTGCAATTCTCATGGCATTTGGGGGGAGCTTTGCATA TGCCTTCAGCCTGGCCCAAACTTCTTTCTGAAAGGTGTCATCAGGAAAAACCGCAGTAAC AAGTCCTTGAGCAAGTGCTTCTCGTGCGGTTAACTTCTTCCCAAAGATGAGCATCTCTGC TGCCTTGCTCGGGCCCATCATCTTCGGAAAAATGTAAGAGGAGCATCCTTCTGGACTCTG GCCGAGGTGGCTGAAGGGCGTGTGAAATGTTGCCCTGTCGGACGCATACACGACATCGAA CAGCCCGAGGAGGGTGACGGAGATGCCCACGGCTGGACCGTTGACCACGGCAATCAGAGG CTTAGGAAAATCTATGAAACGGTCCACAAAGTCCCTCAGTAAGACGGCGCTGCTCTGGGC TCTCTCCTCTACTTTGTCAGGGGGGATATCCTTGAAGTTGGTCAGGTCATTGCCGCTACA GTAATAGTCCCCACTTCCTGTTAGAACGGTGATGCGCGAGCTGTCCTCGCTCGCCGCTTC CAGCGCACGCATGATGTCTCGGTACATCTGGGTGGTGAGTGCATTTTTTTTGGCCGGCCG GTTCAACCTGATCGTTGTGATGCCGTCTTCAGAGGTCACCACCAGGCTGTCACTTTCCGC TTGTTTCTTGTCCGCGGCAGGTGTCACCTGGCTGCAGGATGAAGCACTCAGGCTGGACAC CAAGTCCACGTAGTTCTGCCTGGCAGTTTCCTTGGGCAGATTGCCGAGAGCATTCCACGC GTCCCATTTGGCCTTAAGGATAAAGTCCAGCATGCCTGGTTTGGGCGCATTACAAGGTCC TTCGGTGGCCTGCTTATACAGCGCGTAGAGTTTCAGCTTCACCTCATTTCCTGGATCCTC CTTCAAGAGTTTCACTTGATTCATTGCCTTTGCAAAGTCCTCCTGGCTGGCTGCCATCGC AGGCCCACTCACGTGCAGCTGAGGTGCTGGGCAACGAATGACCTGCAGAGGGCCCCGGAA AGCGCCCGAGAACCAACGATGCGCCAGCAGGCCCACCACCCTAGCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTCTCCCTTTGTGCTTTTTTATTGATTATGGCGGGGGGGGG GTGTCAGTGAAACTTAAAGTCGTATGTATTCCCTGGTAATGCCCCTTCCGCTTGCTCCTC CCGCCAGATGGCTGAAAAAGAACATGCGACCCGCCGAGGACCTGGACTCGGTCACCCAGA AGCTGGCGGTGTTTGGGCCGATCAAGTCTGTGACTCTGTGTGGACGGCAGAGTGCTGTCG TGGTTTTCGAAGACACGGTCTCAGCCTGCCACGCGGTGACGGCTTTTCAGAGCAGGGTGC CAGGCACGATGTTTCGGTGCGCCTGGCAGCAGCGGTTCATGGCCAAGGACGTGAGCCTGC CCCCTGCCCCCCACCTGCCTCCCTTCTCAAAGCCCGTTTCACATCCCTTTTCAGCAGGGC TCCGCTGAAATAAAATCACCCCACCTGCTAGTTAGCGCTGAAAAAAAGGCACGATGACGC CTCTTTGGTTCGGCAACTGGCACTCAGAACCAGCTGCTGGGAAGTCCTGGGCTGTGGCAG GCGTCATAGCTTCGCCTTCTTGGACAAGAAGGCTACGATGGCCGTGATGCACTCATCGGA CACCCACCTCTCTGCCAGGACTCTGCTTTCCTCCGCATTAACCGCATGCAACTTCTCCTT CTCCTGATGCCTCATGAGCCGTTTTGCAATTCTCATGGCATTTGGGGGGAGCTTTGCATA TGCCTTCAGCCTGGCCCAAACTTCTTTCTGAAAGGTGTCATCAGGAAAAACCGCAGTAAC AAGTCCTTGAGCAAGTGCTTCTCGTGCGGTTAACTTCTTCCCAAAGATGAGCATCTCTGC TGCCTTGCTCGGGCCCATCATCTTCGGAAAAATGTAAGAGGAGCATCCTTCTGGACTCTG GCCGAGGTGGCTGAAGGGCGTGTGAAATGTTGCCCTGTCGGACGCATACACGACATCGAA CAGCCCGAGGAGGGTGACGGAGATGCCCACGGCTGGACCGTTGACCACGGCAATCAGAGG CTTAGGAAAATCTATGAAACGGTCCACAAAGTCCCTCAGTAAGACGGCGCTGCTCTGGGC TCTCTCCTCTACTTTGTCAGGGGGGATATCCTTGAAGTTGGTCAGGTCATTGCCGCTACA GTAATAGTCCCCACTTCCTGTTAGAACGGTGATGCGCGAGCTGTCCTCGCTCGCCGCTTC CAGCGCACGCATGATGTCTCGGTACATCTGGGTGGTGAGTGCATTTTTTTTGGCCGGCCG GTTCAACCTGATCGTTGTGATGCCGTCTTCAGAGGTCACCACCAGGCTGTCACTTTCCGC TTGTTTCTTGTCCGCGGCAGGTGTCACCTGGCTGCAGGATGAAGCACTCAGGCTGGACAC CAAGTCCACGTAGTTCTGCCTGGCAGTTTCCTTGGGCAGATTGCCGAGAGCATTCCACGC GTCCCATTTGGCCTTAAGGATAAAGTCCAGCATGCCTGGTTTGGGCGCATTACAAGGTCC TTCGGTGGCCTGCTTATACAGCGCGTAGAGTTTCAGCTTCACCTCATTTCCTGGATCCTC CTTCAAGAGTTTCACTTGATTCATTGCCTTTGCAAAGTCCTCCTGGCTGGCTGCCATCGC AGGCCCACTCACGTGCAGCTGAGGTGCTGGGCAACGAATGACCTGCAGAGGGCCCCGGAA AGCGCCCGAGAACCAACGATGCGCCAGCAGGCCCACCACCCTAGCCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 103-699, gnl|bosTau2|chr23 (40266490-40265875) | |
| 103-699, gnl|Hg17|chr6 (4060650-4061262) | |
| 930-1056, gnl|bosTau2|chr23 (40259179-40259053) | |
| 930-1056, gnl|canFam2|chr35 (7362492-7362625) | |
| 930-1056, gnl|danRer3|chr24 (1312904-1313031) | |
| 930-1056, gnl|dasNov1|scaffold_16872 (8370-8503) | |
| 930-1056, gnl|echTel1|scaffold_178810 (705-838) | |
| 930-1056, gnl|fr1|chrUn (298697089-298696956) | |
| 930-1056, gnl|hg17|chr6 (4070473-4070606) | |
| 930-1056, gnl|Hg17|chr6 (4070479-4070605) | |
| 930-1056, gnl|loxAfr1|scaffold_11981 (37776-37909) | |
| 930-1056, gnl|mm7|chr13 (34401270-34401403) | |
| 930-1056, gnl|Mm7|chr13 (34368190-34368316) | |
| 930-1056, gnl|monDom2|scaffold_3 (87359465-87359598) | |
| 930-1056, gnl|oryCun1|scaffold_145195 (7932-7799) | |
| 930-1056, gnl|panTro1|chr5 (4279881-4280014) | |
| 930-1056, gnl|rheMac2|chr4 (3997463-3997596) | |
| 930-1056, gnl|rn3|chr17 (36209555-36209422) | |
| 930-1056, gnl|tetNig1|chrUn_random (901090-900957) | |
| 930-1056, gnl|xenTro1|scaffold_472 (881815-881943) | |
| 1228-1412, gnl|bosTau2|chr23 (40254715-40254525) | |
| 1228-1412, gnl|Hg17|chr6 (4075605-4075795) | |
| 1228-1412, gnl|Mm7|chr13 (34375087-34375277) | |
| 1509-1651, gnl|bosTau2|chr23 (40252180-40252038) | |
| 1509-1651, gnl|canFam2|chr35 (7373504-7373601) | |
| 1509-1651, gnl|danRer3|chr24 (1317173-1317270) | |
| 1509-1651, gnl|dasNov1|scaffold_195158 (683-780) | |
| 1509-1651, gnl|echTel1|scaffold_50873 (491-588) | |
| 1509-1651, gnl|fr1|chrUn (298694778-298694683) | |
| 1509-1651, gnl|hg17|chr6 (4078779-4078876) | |
| 1509-1651, gnl|Hg17|chr6 (4078781-4078932) | |
| 1509-1651, gnl|loxAfr1|scaffold_213505 (411-314) | |
| 1509-1651, gnl|mm7|chr13 (34408278-34408375) | |
| 1509-1651, gnl|Mm7|chr13 (34408280-34408431) | |
| 1509-1651, gnl|monDom2|scaffold_3 (87370912-87371009) | |
| 1509-1651, gnl|oryCun1|scaffold_140148 (2397-2300) | |
| 1509-1651, gnl|panTro1|chr5 (4288145-4288242) | |
| 1509-1651, gnl|rheMac2|chr4 (4006011-4006108) | |
| 1509-1651, gnl|rn3|chr17 (36202518-36202421) | |
| 1509-1651, gnl|tetNig1|chrUn_random (899744-899648) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 103-699, gnl|bosTau2|chr23 (40266490-40265875) | |
| 103-699, gnl|Hg17|chr6 (4060650-4061262) | |
| 930-1056, gnl|bosTau2|chr23 (40259179-40259053) | |
| 930-1056, gnl|canFam2|chr35 (7362492-7362625) | |
| 930-1056, gnl|danRer3|chr24 (1312904-1313031) | |
| 930-1056, gnl|dasNov1|scaffold_16872 (8370-8503) | |
| 930-1056, gnl|echTel1|scaffold_178810 (705-838) | |
| 930-1056, gnl|fr1|chrUn (298697089-298696956) | |
| 930-1056, gnl|hg17|chr6 (4070473-4070606) | |
| 930-1056, gnl|Hg17|chr6 (4070479-4070605) | |
| 930-1056, gnl|loxAfr1|scaffold_11981 (37776-37909) | |
| 930-1056, gnl|mm7|chr13 (34401270-34401403) | |
| 930-1056, gnl|Mm7|chr13 (34368190-34368316) | |
| 930-1056, gnl|monDom2|scaffold_3 (87359465-87359598) | |
| 930-1056, gnl|oryCun1|scaffold_145195 (7932-7799) | |
| 930-1056, gnl|panTro1|chr5 (4279881-4280014) | |
| 930-1056, gnl|rheMac2|chr4 (3997463-3997596) | |
| 930-1056, gnl|rn3|chr17 (36209555-36209422) | |
| 930-1056, gnl|tetNig1|chrUn_random (901090-900957) | |
| 930-1056, gnl|xenTro1|scaffold_472 (881815-881943) | |
| 1228-1412, gnl|bosTau2|chr23 (40254715-40254525) | |
| 1228-1412, gnl|Hg17|chr6 (4075605-4075795) | |
| 1228-1412, gnl|Mm7|chr13 (34375087-34375277) | |
| 1509-1651, gnl|bosTau2|chr23 (40252180-40252038) | |
| 1509-1651, gnl|canFam2|chr35 (7373504-7373601) | |
| 1509-1651, gnl|danRer3|chr24 (1317173-1317270) | |
| 1509-1651, gnl|dasNov1|scaffold_195158 (683-780) | |
| 1509-1651, gnl|echTel1|scaffold_50873 (491-588) | |
| 1509-1651, gnl|fr1|chrUn (298694778-298694683) | |
| 1509-1651, gnl|hg17|chr6 (4078779-4078876) | |
| 1509-1651, gnl|Hg17|chr6 (4078781-4078932) | |
| 1509-1651, gnl|loxAfr1|scaffold_213505 (411-314) | |
| 1509-1651, gnl|mm7|chr13 (34408278-34408375) | |
| 1509-1651, gnl|Mm7|chr13 (34408280-34408431) | |
| 1509-1651, gnl|monDom2|scaffold_3 (87370912-87371009) | |
| 1509-1651, gnl|oryCun1|scaffold_140148 (2397-2300) | |
| 1509-1651, gnl|panTro1|chr5 (4288145-4288242) | |
| 1509-1651, gnl|rheMac2|chr4 (4006011-4006108) | |
| 1509-1651, gnl|rn3|chr17 (36202518-36202421) | |
| 1509-1651, gnl|tetNig1|chrUn_random (899744-899648) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| nje (0.33184) | |
| cly (0.241284) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nep (0.183925) | |
| ton (0.1755) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| cly (0.241284) | |
| nms (0.213858) | |
| hea (0.204499) | |
| nep (0.183925) | |
| ton (0.1755) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| jej (0.0989218) |