Ss1.1-Liv1-LVR01B070088.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGCCCTCTCTCCAACCTGCTTCCACGGGGATCTGCTTCCTGACAGTGAGAGATGACT GTAGCCTGGAGACATCTGCTGAGAGCTTTGCACCTGCAGACCTTATCTCCCAGGACCCCC AAGGCGGGCCCTTCCCTGAATGGTGCTTTCTGGACATCTGTGACCAAACTCGGTCTTCAT ACAAAGCCCATCATGCCTCCGTGTGACTTCACACCTGAAAGATACCAGTCGATCGCCTAC AGCCGAGTCCTGGACATTCACAAGCAACACCTTTCTCCTGTGCAGACGGCCTATTTCCCA GAGCCTCTGCTGCTCCATCAGGGCCACATGGAGTGGCTCTTTGATTATGAGGGAAACAGA TACCTGGATTTCTTTTCTGGGATTGTCACTGTCAGCGTTGGTCACTGCCACCCGAAACTA AACGCCGCGGCACAAACGCAGCTTGGCCGCCTGTGGCACACAAGCCCCGTCTTCTTCCAC CCTCCCATCCACGAATACGCAGAGAAGCTTTCAGCGCTTCTTCCTGAGCCTCTGAAGGTC ATTTTCTTGGTGAACAGTGGCTCAGAAGCCAATGACCTAGCCATGCTGATGGCCAGAGCA CACACAAATAACACAGACATCATTTCTTTCAGAGGAGCCTACCATGGGTGCAGTCCTTAC ACAATTGGCCTGACCAATGTAGGGTTCTACAAAATGAGAATCCCCACTGGGATGGGCTGC CGATCCACGATGTGCCCAGATGTTTTCCGTGGGCCTTGGGGAGGAAGCCACTGCCGAGAT TCTCCAGTGCAAACAACAAGGGAATGCAGCTGTGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGCCCTCTCTCCAACCTGCTTCCACGGGGATCTGCTTCCTGACAGTGAGAGATGACT GTAGCCTGGAGACATCTGCTGAGAGCTTTGCACCTGCAGACCTTATCTCCCAGGACCCCC AAGGCGGGCCCTTCCCTGAATGGTGCTTTCTGGACATCTGTGACCAAACTCGGTCTTCAT ACAAAGCCCATCATGCCTCCGTGTGACTTCACACCTGAAAGATACCAGTCGATCGCCTAC AGCCGAGTCCTGGACATTCACAAGCAACACCTTTCTCCTGTGCAGACGGCCTATTTCCCA GAGCCTCTGCTGCTCCATCAGGGCCACATGGAGTGGCTCTTTGATTATGAGGGAAACAGA TACCTGGATTTCTTTTCTGGGATTGTCACTGTCAGCGTTGGTCACTGCCACCCGAAACTA AACGCCGCGGCACAAACGCAGCTTGGCCGCCTGTGGCACACAAGCCCCGTCTTCTTCCAC CCTCCCATCCACGAATACGCAGAGAAGCTTTCAGCGCTTCTTCCTGAGCCTCTGAAGGTC ATTTTCTTGGTGAACAGTGGCTCAGAAGCCAATGACCTAGCCATGCTGATGGCCAGAGCA CACACAAATAACACAGACATCATTTCTTTCAGAGGAGCCTACCATGGGTGCAGTCCTTAC ACAATTGGCCTGACCAATGTAGGGTTCTACAAAATGAGAATCCCCACTGGGATGGGCTGC CGATCCACGATGTGCCCAGATGTTTTCCGTGGGCCTTGGGGAGGAAGCCACTGCCGAGAT TCTCCAGTGCAAACAACAAGGGAATGCAGCTGTGCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 18-145, gnl|bosTau2|chr19 (27962043-27962170) | |
| 18-145, gnl|canFam2|chr4 (76488317-76487970) | |
| 18-145, gnl|dasNov1|scaffold_122900 (7381-7062) | |
| 18-145, gnl|echTel1|scaffold_324644 (40445-40737) | |
| 18-145, gnl|hg17|chr5 (35083626-35083979) | |
| 18-145, gnl|Hg17|chr5 (35083790-35083664) | |
| 18-145, gnl|loxAfr1|scaffold_6086 (42172-41828) | |
| 18-145, gnl|mm7|chr15 (10420371-10420017) | |
| 18-145, gnl|oryCun1|scaffold_195927 (118090-118445) | |
| 18-145, gnl|panTro1|chr4 (81747886-81747527) | |
| 18-145, gnl|rheMac2|chr6 (34813320-34813681) | |
| 18-145, gnl|rn3|chr2 (59641761-59641426) | |
| 206-414, gnl|bosTau2|chr19 (27970572-27970780) | |
| 206-414, gnl|canFam2|chr4 (76496557-76496349) | |
| 206-414, gnl|danRer3|chrNA (250466165-250465988) | |
| 206-414, gnl|echTel1|scaffold_142085 (737-529) | |
| 206-414, gnl|fr1|chrUn (112107866-112107680) | |
| 206-414, gnl|galGal2|chrZ_random (9765405-9765606) | |
| 206-414, gnl|hg17|chr5 (35075170-35075378) | |
| 206-414, gnl|Hg17|chr5 (35075391-35075185) | |
| 206-414, gnl|loxAfr1|scaffold_6086 (53965-53754) | |
| 206-414, gnl|mm7|chr15 (10435544-10435328) | |
| 206-414, gnl|Mm7|chr15 (10435313-10435519) | |
| 206-414, gnl|monDom2|scaffold_20 (37825197-37824989) | |
| 206-414, gnl|oryCun1|scaffold_207186 (53493-53286) | |
| 206-414, gnl|panTro1|chr4 (81756351-81756143) | |
| 206-414, gnl|rheMac2|chr6 (34804804-34805012) | |
| 206-414, gnl|rn3|chr2 (59651297-59651087) | |
| 206-414, gnl|tetNig1|chr4 (3320030-3320210) | |
| 206-414, gnl|xenTro1|scaffold_625 (223796-223993) | |
| 415-540, gnl|bosTau2|chr19 (27973906-27974031) | |
| 415-540, gnl|canFam2|chr4 (76499462-76499312) | |
| 415-540, gnl|danRer3|chrNA (250468269-250468131) | |
| 415-540, gnl|dasNov1|scaffold_73334 (1219-1069) | |
| 415-540, gnl|fr1|chrUn (112108065-112107933) | |
| 415-540, gnl|galGal2|chrZ_random (9764938-9765071) | |
| 415-540, gnl|hg17|chr5 (35072798-35072948) | |
| 415-540, gnl|Hg17|chr5 (35072926-35072752) | |
| 415-540, gnl|loxAfr1|scaffold_6086 (56891-56741) | |
| 415-540, gnl|mm7|chr15 (10439156-10439006) | |
| 415-540, gnl|Mm7|chr15 (10439026-10439151) | |
| 415-540, gnl|monDom2|scaffold_20 (37831302-37831148) | |
| 415-540, gnl|oryCun1|scaffold_195927 (107676-107826) | |
| 415-540, gnl|panTro1|chr4 (81758716-81758566) | |
| 415-540, gnl|rheMac2|chr6 (34802430-34802578) | |
| 415-540, gnl|rn3|chr2 (59655194-59655044) | |
| 415-540, gnl|tetNig1|chr4 (3319830-3319960) | |
| 415-540, gnl|xenTro1|scaffold_625 (222833-222986) | |
| 630-751, gnl|bosTau2|chr19 (27978993-27979113) | |
| 630-751, gnl|Hg17|chr5 (35069418-35069298) | |
| 630-751, gnl|Mm7|chr15 (10442250-10442370) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-145, gnl|bosTau2|chr19 (27962043-27962170) | |
| 18-145, gnl|canFam2|chr4 (76488317-76487970) | |
| 18-145, gnl|dasNov1|scaffold_122900 (7381-7062) | |
| 18-145, gnl|echTel1|scaffold_324644 (40445-40737) | |
| 18-145, gnl|hg17|chr5 (35083626-35083979) | |
| 18-145, gnl|Hg17|chr5 (35083790-35083664) | |
| 18-145, gnl|loxAfr1|scaffold_6086 (42172-41828) | |
| 18-145, gnl|mm7|chr15 (10420371-10420017) | |
| 18-145, gnl|oryCun1|scaffold_195927 (118090-118445) | |
| 18-145, gnl|panTro1|chr4 (81747886-81747527) | |
| 18-145, gnl|rheMac2|chr6 (34813320-34813681) | |
| 18-145, gnl|rn3|chr2 (59641761-59641426) | |
| 206-414, gnl|bosTau2|chr19 (27970572-27970780) | |
| 206-414, gnl|canFam2|chr4 (76496557-76496349) | |
| 206-414, gnl|danRer3|chrNA (250466165-250465988) | |
| 206-414, gnl|echTel1|scaffold_142085 (737-529) | |
| 206-414, gnl|fr1|chrUn (112107866-112107680) | |
| 206-414, gnl|galGal2|chrZ_random (9765405-9765606) | |
| 206-414, gnl|hg17|chr5 (35075170-35075378) | |
| 206-414, gnl|Hg17|chr5 (35075391-35075185) | |
| 206-414, gnl|loxAfr1|scaffold_6086 (53965-53754) | |
| 206-414, gnl|mm7|chr15 (10435544-10435328) | |
| 206-414, gnl|Mm7|chr15 (10435313-10435519) | |
| 206-414, gnl|monDom2|scaffold_20 (37825197-37824989) | |
| 206-414, gnl|oryCun1|scaffold_207186 (53493-53286) | |
| 206-414, gnl|panTro1|chr4 (81756351-81756143) | |
| 206-414, gnl|rheMac2|chr6 (34804804-34805012) | |
| 206-414, gnl|rn3|chr2 (59651297-59651087) | |
| 206-414, gnl|tetNig1|chr4 (3320030-3320210) | |
| 206-414, gnl|xenTro1|scaffold_625 (223796-223993) | |
| 415-540, gnl|bosTau2|chr19 (27973906-27974031) | |
| 415-540, gnl|canFam2|chr4 (76499462-76499312) | |
| 415-540, gnl|danRer3|chrNA (250468269-250468131) | |
| 415-540, gnl|dasNov1|scaffold_73334 (1219-1069) | |
| 415-540, gnl|fr1|chrUn (112108065-112107933) | |
| 415-540, gnl|galGal2|chrZ_random (9764938-9765071) | |
| 415-540, gnl|hg17|chr5 (35072798-35072948) | |
| 415-540, gnl|Hg17|chr5 (35072926-35072752) | |
| 415-540, gnl|loxAfr1|scaffold_6086 (56891-56741) | |
| 415-540, gnl|mm7|chr15 (10439156-10439006) | |
| 415-540, gnl|Mm7|chr15 (10439026-10439151) | |
| 415-540, gnl|monDom2|scaffold_20 (37831302-37831148) | |
| 415-540, gnl|oryCun1|scaffold_195927 (107676-107826) | |
| 415-540, gnl|panTro1|chr4 (81758716-81758566) | |
| 415-540, gnl|rheMac2|chr6 (34802430-34802578) | |
| 415-540, gnl|rn3|chr2 (59655194-59655044) | |
| 415-540, gnl|tetNig1|chr4 (3319830-3319960) | |
| 415-540, gnl|xenTro1|scaffold_625 (222833-222986) | |
| 630-751, gnl|bosTau2|chr19 (27978993-27979113) | |
| 630-751, gnl|Hg17|chr5 (35069418-35069298) | |
| 630-751, gnl|Mm7|chr15 (10442250-10442370) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) | |
| eje (0.0988338) |