Non-Coding RNA Search

Ss1.1-Liv1-LVR01B090094.5.5

Sequence:


               
               CAAGTTCGAGAACGAGGAGTTCTTCAGGAAGCTGAGCCGCGAATGTGAGATTAAGTACAC
GGGCTTCAGGGACCGGCCCCACGAGGAGCGCCAGGCGCGCTTCCAGAACGCCTGCCGCGA
CGGCCGCTCGGAAATCGCTTTTGTGGCCACAGGAACCAATCTGTCTCTCCAGTTTTTTCC
GGCCAGCTGGCAGGGAGAACAGCGACAAACACCTAGCCGGGAGTATGTCGACTTAGAAAG
AGAAGCAGGCAAGGTATATTTGAAGGCTCCCATGATTCTGAATGGAGTGTGTGTTATCTG
GAAAGGCTGGATTGATCTCCAGAGACTGGATGGTATGGGCTGCCTGGAGTTTGATGAGGA
GCGAGCCCAGCAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCCCGAAGAAGGAC
ACGTGAATTTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGCAAGAAGACAGCA
AGACCCTAGTCCTGGTTCCAGTTTAGGTGGTGGTGATGACCTCAAACTTCGTTAATTAGT
GGCACAGAAGATGTGCCCCCGCATCTTTACATATTCATTGTTTCTAGTCTGCAGAAATAT
TAAAAGACCAGAAACTGTGATAACTGGAGGTACTACAGTCTGTTTCTCAACCTTAGGCAG
TAACAAGACATCACAAACTGCCATGGTTTTGCACTATGATATAATACCTGCATTTCTAAT
TTTGTATGCATGTAGCCAGTAATAATTTGAAATTTCTTTCTATGCAAGCTTACCTTGTTG
GCGTTATTTTAGTGAGTTGAAAGTATCTACTTGTAAAGCTTTGTTTTTCCATTTTAATTT
AAAAGTTCATGTTATTTTAAAACAAGTCAAGAAATTAAAATTTTTATCAGAGGGTTTTTT
CCCCTAATCAGTTGCTCTTTTTTTGGTAATTTTAGATGTGTTGGTTATACAGCTTCATTT
TAGATAAGTATTTTTGGTTTTTTGTTTTGTTTCCCACATTTCCTTTTGTGTTTTTATAGT
CTATGGCATTTTTAAACTGCTGATGGTTTGCATTATTTACAAGCTTAAAAACCTAGTAGC
ATAGAACTGTCTGCCACAGCCTTCTAACACAAAGTTTACAGTCATCAAAGTTGCAGTATC
CTTTTAAATGTTGATAATCAGCTCTTTTTCTTTCCTTTTTCAACATAAAAATTTTTAATT
GGTATTAACTCTAGTCTGCCCCAGATCTGTTTTAGATTCTCTTCTGTAATCATGAGTTTG
TGTGAAGATATTCTTCATAGACGATAATTAATATTCTACTGAAATGCCTAAAGAAGTCGC
AGGCTGGCTTCTGTTTTATTCAGGGATTTTTTTTTAAAAAGTCAATCAGAAAAGGGATAC
TGGAGCTTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTTCGAGAACGAGGAGTTCTTCAGGAAGCTGAGCCGCGAATGTGAGATTAAGTACAC
GGGCTTCAGGGACCGGCCCCACGAGGAGCGCCAGGCGCGCTTCCAGAACGCCTGCCGCGA
CGGCCGCTCGGAAATCGCTTTTGTGGCCACAGGAACCAATCTGTCTCTCCAGTTTTTTCC
GGCCAGCTGGCAGGGAGAACAGCGACAAACACCTAGCCGGGAGTATGTCGACTTAGAAAG
AGAAGCAGGCAAGGTATATTTGAAGGCTCCCATGATTCTGAATGGAGTGTGTGTTATCTG
GAAAGGCTGGATTGATCTCCAGAGACTGGATGGTATGGGCTGCCTGGAGTTTGATGAGGA
GCGAGCCCAGCAGGAGGATGCATTAGCACAACAGGCCTTTGAAGAGGCCCGAAGAAGGAC
ACGTGAATTTGAAGATAGAGACAGGTCTCATCGGGAGGAAATGGAGGCAAGAAGACAGCA
AGACCCTAGTCCTGGTTCCAGTTTAGGTGGTGGTGATGACCTCAAACTTCGTTAATTAGT
GGCACAGAAGATGTGCCCCCGCATCTTTACATATTCATTGTTTCTAGTCTGCAGAAATAT
TAAAAGACCAGAAACTGTGATAACTGGAGGTACTACAGTCTGTTTCTCAACCTTAGGCAG
TAACAAGACATCACAAACTGCCATGGTTTTGCACTATGATATAATACCTGCATTTCTAAT
TTTGTATGCATGTAGCCAGTAATAATTTGAAATTTCTTTCTATGCAAGCTTACCTTGTTG
GCGTTATTTTAGTGAGTTGAAAGTATCTACTTGTAAAGCTTTGTTTTTCCATTTTAATTT
AAAAGTTCATGTTATTTTAAAACAAGTCAAGAAATTAAAATTTTTATCAGAGGGTTTTTT
CCCCTAATCAGTTGCTCTTTTTTTGGTAATTTTAGATGTGTTGGTTATACAGCTTCATTT
TAGATAAGTATTTTTGGTTTTTTGTTTTGTTTCCCACATTTCCTTTTGTGTTTTTATAGT
CTATGGCATTTTTAAACTGCTGATGGTTTGCATTATTTACAAGCTTAAAAACCTAGTAGC
ATAGAACTGTCTGCCACAGCCTTCTAACACAAAGTTTACAGTCATCAAAGTTGCAGTATC
CTTTTAAATGTTGATAATCAGCTCTTTTTCTTTCCTTTTTCAACATAAAAATTTTTAATT
GGTATTAACTCTAGTCTGCCCCAGATCTGTTTTAGATTCTCTTCTGTAATCATGAGTTTG
TGTGAAGATATTCTTCATAGACGATAATTAATATTCTACTGAAATGCCTAAAGAAGTCGC
AGGCTGGCTTCTGTTTTATTCAGGGATTTTTTTTTAAAAAGTCAATCAGAAAAGGGATAC
TGGAGCTTCTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5ZM50_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ZM50_CHICK

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               132-256, gnl|bosTau2|chr18 (28257761-28257885)
               

               
               132-256, gnl|Hg17|chr16 (65628038-65628162)
               

               
               132-256, gnl|Mm7|chr8 (103777227-103777351)
               


               
               462-1392, gnl|bosTau2|chr18 (28298254-28299187)
               

               
               462-1392, gnl|Hg17|chr16 (65690109-65691152)
               

               
               462-1392, gnl|Mm7|chr8 (103814538-103815411)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-256, gnl|bosTau2|chr18 (28257761-28257885)
               

               
               132-256, gnl|Hg17|chr16 (65628038-65628162)
               

               
               132-256, gnl|Mm7|chr8 (103777227-103777351)
               


               
               462-1392, gnl|bosTau2|chr18 (28298254-28299187)
               

               
               462-1392, gnl|Hg17|chr16 (65690109-65691152)
               

               
               462-1392, gnl|Mm7|chr8 (103814538-103815411)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               med (0.232504)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               eye (0.170503)
               

               
               lnt (0.142308)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	132-256, gnl\|bosTau2\|chr18 (28257761-28257885)
	132-256, gnl\|Hg17\|chr16 (65628038-65628162)
	132-256, gnl\|Mm7\|chr8 (103777227-103777351)

	462-1392, gnl\|bosTau2\|chr18 (28298254-28299187)
	462-1392, gnl\|Hg17\|chr16 (65690109-65691152)
	462-1392, gnl\|Mm7\|chr8 (103814538-103815411)

	med (0.232504)
	eye (0.170503)
	lnt (0.142308)
	eep (0.122564)
	cty (0.10408)