Ss1.1-Liv1-LVR01C030091.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGCCGTCGGTGCGCGGCGGCCTGGAAGGCACCGCCTGCAGACGCTCGGAACTGCGGAC CCGAGAGCTACCCGTAGAGGGCCGGCGGCGGCGGGAGCCGAGTGGGTCGGGCGGGGCCGA GCCGGGCCGGGGCCGTGTGGTGGCCGGGCAGCGGCCGGGCCGGCGGACGGCGGGATGGGC TGCACCGTGAGCGCTGAGGACAAGGCGGCGGCCGAGCGCTCCAAAATGATCGACAAGAAC CTGCGGGAAGACGGCGAGAAGGCGGCGCGGGAGGTGAAGTTGCTGCTCTTGGGTGCTGGG GAGTCAGGGAAGAGCACCATTGTCAAGCAGATGAAGATCATCCACGAGGATGGCTACTCA GAGGAGGAATGCCGGCAGTACCGGGCAGTCGTCTACAGCAACACCATCCAGTCCATCATG GCCATTGTCAAAGCCATGGGCAATCTGCAGATTGACTTTGCCGACCCCTCCCGTGCGGAC GACGCCAGGCAGCTGTTTGCGCTGTCATGCACGGCTGAGGAGCAGGGCGTGCTCCCCGAG GACCTGTCCGGCGTCATCCGGAGGCTCTGGGCTGACCACGGTGTGCAGGCCTGCTTTGGC CGCTCGCGGGAGTACCAGCTCAACGACTCTGCCGCCTACTACCTGAATGACCTGGAGCGC ATCGCACAGAGTGACTACATCCCCACGCAGCAGGATGTGCTGCGGACCCGAGTGAAGACC ACAGGCATCGTGGAGACGCACTTCACCTTCAAAGACCTACACTTCAAGATGTTTGATGTG GGCGGTCAGCGGTCTGAGCGGAAGAAGTGGATCCACTGCTTTGAGGGCGTCACAGCCATC ATCTTCTGCGTAGCTTTGAGCGCCTATGATCTGGTGCTAGCCGAGGACGAGGAGATGAAC CGCATGCACGAGAGCATGAAGCTGTTTGACAGCATCTGCAACAACAAGTGGTTCACGGAC ACGTCCATCATCCTCTTCCTCAACAAGAAGGATCTGTTCGAGGAGAAGATCACACACAGC CCCCTGACCATCTGCTTCCCTGAGTATACAGGGGCCAACAAGTACGACGAGGCAGCCAGC TACATCCAGAGCAAGTTTGAGGACCTGAACAAGCGCAAAGACACCAAGGAGATCTACACA CACTTCACATGCGCCACAGACACCAAGAACGTGCAGTTCGTGTTCGACGCCGTCACTGAT GTCATCATCAAGAACAACCTGAAGGACTGCGGCCTCTTCTGAGGGGCAGCGGGGCCTGGC AGGATGGGCCACCGCCGACTCTGCTCCCCCAGCCCGAGGAAGATGGGGGCAAGAGGACCG TGCTCCCCACCTGTCCCCCTGGCCGCTTTTCCCCTTCTTTCCTCTCTCTGTTCTTGGCTT CCACCCTGCCCTGTCCCCTCCCTCAGCTCCAGAGACTTGGGGGAGGGGTTGCCATAGGCC TCCCTGCTGGAAGCCCGCTCTTGTCCCTAGTGCAGGGAACGGCCGAGGTACCCCCTCCTG GCATCTGTTCTGGTTTTGACCATTGTCCTCTTCTGCAATGAGGGAGGGGAGCACATGCTG AGTCTCCCAAGGCCTGTATTTGGAGGGACACCCACTTTTCCAGCCTAGGACCCCTGGCTT CGCCTAACACCAGCCCCTGACCCAGCCCAAGTCCAGATGTTTACAGGGAGCCTCCTGCCT GCTCCTCAAACCATCCCCCGCCCAACAAGCCACTCGGAGGCCCCAAAGGAAAAAGCACAA GAAGCGTGAGATGTCACCATTCCCGGAGACCACAGTCCACCTGCTTATCTCGTAGCTTTT TAAAAAAATTAAGTCAAGAGGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGCCGTCGGTGCGCGGCGGCCTGGAAGGCACCGCCTGCAGACGCTCGGAACTGCGGAC CCGAGAGCTACCCGTAGAGGGCCGGCGGCGGCGGGAGCCGAGTGGGTCGGGCGGGGCCGA GCCGGGCCGGGGCCGTGTGGTGGCCGGGCAGCGGCCGGGCCGGCGGACGGCGGGATGGGC TGCACCGTGAGCGCTGAGGACAAGGCGGCGGCCGAGCGCTCCAAAATGATCGACAAGAAC CTGCGGGAAGACGGCGAGAAGGCGGCGCGGGAGGTGAAGTTGCTGCTCTTGGGTGCTGGG GAGTCAGGGAAGAGCACCATTGTCAAGCAGATGAAGATCATCCACGAGGATGGCTACTCA GAGGAGGAATGCCGGCAGTACCGGGCAGTCGTCTACAGCAACACCATCCAGTCCATCATG GCCATTGTCAAAGCCATGGGCAATCTGCAGATTGACTTTGCCGACCCCTCCCGTGCGGAC GACGCCAGGCAGCTGTTTGCGCTGTCATGCACGGCTGAGGAGCAGGGCGTGCTCCCCGAG GACCTGTCCGGCGTCATCCGGAGGCTCTGGGCTGACCACGGTGTGCAGGCCTGCTTTGGC CGCTCGCGGGAGTACCAGCTCAACGACTCTGCCGCCTACTACCTGAATGACCTGGAGCGC ATCGCACAGAGTGACTACATCCCCACGCAGCAGGATGTGCTGCGGACCCGAGTGAAGACC ACAGGCATCGTGGAGACGCACTTCACCTTCAAAGACCTACACTTCAAGATGTTTGATGTG GGCGGTCAGCGGTCTGAGCGGAAGAAGTGGATCCACTGCTTTGAGGGCGTCACAGCCATC ATCTTCTGCGTAGCTTTGAGCGCCTATGATCTGGTGCTAGCCGAGGACGAGGAGATGAAC CGCATGCACGAGAGCATGAAGCTGTTTGACAGCATCTGCAACAACAAGTGGTTCACGGAC ACGTCCATCATCCTCTTCCTCAACAAGAAGGATCTGTTCGAGGAGAAGATCACACACAGC CCCCTGACCATCTGCTTCCCTGAGTATACAGGGGCCAACAAGTACGACGAGGCAGCCAGC TACATCCAGAGCAAGTTTGAGGACCTGAACAAGCGCAAAGACACCAAGGAGATCTACACA CACTTCACATGCGCCACAGACACCAAGAACGTGCAGTTCGTGTTCGACGCCGTCACTGAT GTCATCATCAAGAACAACCTGAAGGACTGCGGCCTCTTCTGAGGGGCAGCGGGGCCTGGC AGGATGGGCCACCGCCGACTCTGCTCCCCCAGCCCGAGGAAGATGGGGGCAAGAGGACCG TGCTCCCCACCTGTCCCCCTGGCCGCTTTTCCCCTTCTTTCCTCTCTCTGTTCTTGGCTT CCACCCTGCCCTGTCCCCTCCCTCAGCTCCAGAGACTTGGGGGAGGGGTTGCCATAGGCC TCCCTGCTGGAAGCCCGCTCTTGTCCCTAGTGCAGGGAACGGCCGAGGTACCCCCTCCTG GCATCTGTTCTGGTTTTGACCATTGTCCTCTTCTGCAATGAGGGAGGGGAGCACATGCTG AGTCTCCCAAGGCCTGTATTTGGAGGGACACCCACTTTTCCAGCCTAGGACCCCTGGCTT CGCCTAACACCAGCCCCTGACCCAGCCCAAGTCCAGATGTTTACAGGGAGCCTCCTGCCT GCTCCTCAAACCATCCCCCGCCCAACAAGCCACTCGGAGGCCCCAAAGGAAAAAGCACAA GAAGCGTGAGATGTCACCATTCCCGGAGACCACAGTCCACCTGCTTATCTCGTAGCTTTT TAAAAAAATTAAGTCAAGAGGGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 477-595, - strand, RNAz p=0.521411 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 477-595, - strand, RNAz p=0.521411 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 1-295, gnl|bosTau2|chr22 (38479003-38479295) | |
| 1-295, gnl|Hg17|chr3 (50248600-50248892) | |
| 1-295, gnl|Mm7|chr9 (107364831-107364545) | |
| 477-638, gnl|bosTau2|chr22 (38493915-38494076) | |
| 477-638, gnl|canFam2|chr20 (42079985-42079796) | |
| 477-638, gnl|danRer3|chr4 (28250655-28250474) | |
| 477-638, gnl|dasNov1|scaffold_96841 (2035-1846) | |
| 477-638, gnl|echTel1|scaffold_299214 (2543-2724) | |
| 477-638, gnl|fr1|chrUn (102497114-102497284) | |
| 477-638, gnl|galGal2|chr12 (2815754-2815583) | |
| 477-638, gnl|hg17|chr3 (50265451-50265640) | |
| 477-638, gnl|Hg17|chr3 (50265459-50265620) | |
| 477-638, gnl|loxAfr1|scaffold_49072 (12562-12374) | |
| 477-638, gnl|mm7|chr9 (107349316-107349127) | |
| 477-638, gnl|Mm7|chr9 (107349306-107349145) | |
| 477-638, gnl|monDom2|scaffold_601 (12411-12228) | |
| 477-638, gnl|oryCun1|scaffold_210732 (11953-11767) | |
| 477-638, gnl|panTro1|chr2 (51845361-51845550) | |
| 477-638, gnl|rheMac2|chr2 (86165830-86165641) | |
| 477-638, gnl|rn3|chr8 (112886625-112886436) | |
| 477-638, gnl|tetNig1|chr11 (4752705-4752535) | |
| 477-638, gnl|xenTro1|scaffold_189 (671431-671622) | |
| 673-1258, gnl|bosTau2|chr19 (56373048-56373635) | |
| 673-1258, gnl|Hg17|chr17 (60441409-60440822) | |
| 673-1258, gnl|Mm7|chr11 (109504955-109505539) | |
| 765-891, gnl|bosTau2|chr18 (25309321-25309447) | |
| 765-891, gnl|canFam2|chr2 (62704965-62704815) | |
| 765-891, gnl|danRer3|chr18 (29240544-29240403) | |
| 765-891, gnl|dasNov1|scaffold_98027 (2142-1994) | |
| 765-891, gnl|echTel1|scaffold_188800 (625-476) | |
| 765-891, gnl|fr1|chrUn (313773523-313773374) | |
| 765-891, gnl|galGal2|chr11 (2198738-2198889) | |
| 765-891, gnl|hg17|chr16 (54928132-54928280) | |
| 765-891, gnl|Hg17|chr16 (54928141-54928267) | |
| 765-891, gnl|loxAfr1|scaffold_60423 (4155-4304) | |
| 765-891, gnl|mm7|chr8 (92539333-92539482) | |
| 765-891, gnl|Mm7|chr8 (92539343-92539469) | |
| 765-891, gnl|monDom2|scaffold_35 (22952686-22952834) | |
| 765-891, gnl|oryCun1|scaffold_174716 (42174-42322) | |
| 765-891, gnl|panTro1|chr18 (49022636-49022784) | |
| 765-891, gnl|rheMac2|chr20 (54653111-54653259) | |
| 765-891, gnl|rn3|chr19 (11493901-11493752) | |
| 765-891, gnl|tetNig1|chr5 (5211259-5211118) | |
| 765-891, gnl|xenTro1|scaffold_180 (305522-305382) | |
| 897-1056, gnl|bosTau2|chr17 (45148228-45148071) | |
| 897-1056, gnl|canFam2|chr26 (30874827-30875014) | |
| 897-1056, gnl|danRer3|chr4 (28240925-28240751) | |
| 897-1056, gnl|dasNov1|scaffold_35957 (9181-9363) | |
| 897-1056, gnl|echTel1|scaffold_264021 (3085-2908) | |
| 897-1056, gnl|fr1|chrUn (107511785-107511973) | |
| 897-1056, gnl|galGal2|chr15 (8638216-8638030) | |
| 897-1056, gnl|hg17|chr22 (21789800-21789987) | |
| 897-1056, gnl|Hg17|chr22 (21789827-21789984) | |
| 897-1056, gnl|loxAfr1|scaffold_49072 (9044-8882) | |
| 897-1056, gnl|mm7|chr10 (74670485-74670678) | |
| 897-1056, gnl|Mm7|chr10 (74670518-74670675) | |
| 897-1056, gnl|monDom2|scaffold_141 (1501553-1501743) | |
| 897-1056, gnl|oryCun1|scaffold_198154 (56824-56637) | |
| 897-1056, gnl|panTro1|chr23 (21895965-21896152) | |
| 897-1056, gnl|rheMac2|chr10 (67271418-67271605) | |
| 897-1056, gnl|rn3|chr20 (14149057-14148864) | |
| 897-1056, gnl|tetNig1|chr4 (1267037-1266864) | |
| 897-1056, gnl|xenTro1|scaffold_169 (395812-395984) | |
| 1266-1801, gnl|bosTau2|chr22 (38498520-38499041) | |
| 1266-1801, gnl|Hg17|chr3 (50270803-50271315) | |
| 1266-1801, gnl|Mm7|chr9 (107344547-107344045) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-295, gnl|bosTau2|chr22 (38479003-38479295) | |
| 1-295, gnl|Hg17|chr3 (50248600-50248892) | |
| 1-295, gnl|Mm7|chr9 (107364831-107364545) | |
| 477-638, gnl|bosTau2|chr22 (38493915-38494076) | |
| 477-638, gnl|canFam2|chr20 (42079985-42079796) | |
| 477-638, gnl|danRer3|chr4 (28250655-28250474) | |
| 477-638, gnl|dasNov1|scaffold_96841 (2035-1846) | |
| 477-638, gnl|echTel1|scaffold_299214 (2543-2724) | |
| 477-638, gnl|fr1|chrUn (102497114-102497284) | |
| 477-638, gnl|galGal2|chr12 (2815754-2815583) | |
| 477-638, gnl|hg17|chr3 (50265451-50265640) | |
| 477-638, gnl|Hg17|chr3 (50265459-50265620) | |
| 477-638, gnl|loxAfr1|scaffold_49072 (12562-12374) | |
| 477-638, gnl|mm7|chr9 (107349316-107349127) | |
| 477-638, gnl|Mm7|chr9 (107349306-107349145) | |
| 477-638, gnl|monDom2|scaffold_601 (12411-12228) | |
| 477-638, gnl|oryCun1|scaffold_210732 (11953-11767) | |
| 477-638, gnl|panTro1|chr2 (51845361-51845550) | |
| 477-638, gnl|rheMac2|chr2 (86165830-86165641) | |
| 477-638, gnl|rn3|chr8 (112886625-112886436) | |
| 477-638, gnl|tetNig1|chr11 (4752705-4752535) | |
| 477-638, gnl|xenTro1|scaffold_189 (671431-671622) | |
| 673-1258, gnl|bosTau2|chr19 (56373048-56373635) | |
| 673-1258, gnl|Hg17|chr17 (60441409-60440822) | |
| 673-1258, gnl|Mm7|chr11 (109504955-109505539) | |
| 765-891, gnl|bosTau2|chr18 (25309321-25309447) | |
| 765-891, gnl|canFam2|chr2 (62704965-62704815) | |
| 765-891, gnl|danRer3|chr18 (29240544-29240403) | |
| 765-891, gnl|dasNov1|scaffold_98027 (2142-1994) | |
| 765-891, gnl|echTel1|scaffold_188800 (625-476) | |
| 765-891, gnl|fr1|chrUn (313773523-313773374) | |
| 765-891, gnl|galGal2|chr11 (2198738-2198889) | |
| 765-891, gnl|hg17|chr16 (54928132-54928280) | |
| 765-891, gnl|Hg17|chr16 (54928141-54928267) | |
| 765-891, gnl|loxAfr1|scaffold_60423 (4155-4304) | |
| 765-891, gnl|mm7|chr8 (92539333-92539482) | |
| 765-891, gnl|Mm7|chr8 (92539343-92539469) | |
| 765-891, gnl|monDom2|scaffold_35 (22952686-22952834) | |
| 765-891, gnl|oryCun1|scaffold_174716 (42174-42322) | |
| 765-891, gnl|panTro1|chr18 (49022636-49022784) | |
| 765-891, gnl|rheMac2|chr20 (54653111-54653259) | |
| 765-891, gnl|rn3|chr19 (11493901-11493752) | |
| 765-891, gnl|tetNig1|chr5 (5211259-5211118) | |
| 765-891, gnl|xenTro1|scaffold_180 (305522-305382) | |
| 897-1056, gnl|bosTau2|chr17 (45148228-45148071) | |
| 897-1056, gnl|canFam2|chr26 (30874827-30875014) | |
| 897-1056, gnl|danRer3|chr4 (28240925-28240751) | |
| 897-1056, gnl|dasNov1|scaffold_35957 (9181-9363) | |
| 897-1056, gnl|echTel1|scaffold_264021 (3085-2908) | |
| 897-1056, gnl|fr1|chrUn (107511785-107511973) | |
| 897-1056, gnl|galGal2|chr15 (8638216-8638030) | |
| 897-1056, gnl|hg17|chr22 (21789800-21789987) | |
| 897-1056, gnl|Hg17|chr22 (21789827-21789984) | |
| 897-1056, gnl|loxAfr1|scaffold_49072 (9044-8882) | |
| 897-1056, gnl|mm7|chr10 (74670485-74670678) | |
| 897-1056, gnl|Mm7|chr10 (74670518-74670675) | |
| 897-1056, gnl|monDom2|scaffold_141 (1501553-1501743) | |
| 897-1056, gnl|oryCun1|scaffold_198154 (56824-56637) | |
| 897-1056, gnl|panTro1|chr23 (21895965-21896152) | |
| 897-1056, gnl|rheMac2|chr10 (67271418-67271605) | |
| 897-1056, gnl|rn3|chr20 (14149057-14148864) | |
| 897-1056, gnl|tetNig1|chr4 (1267037-1266864) | |
| 897-1056, gnl|xenTro1|scaffold_169 (395812-395984) | |
| 1266-1801, gnl|bosTau2|chr22 (38498520-38499041) | |
| 1266-1801, gnl|Hg17|chr3 (50270803-50271315) | |
| 1266-1801, gnl|Mm7|chr9 (107344547-107344045) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| clu (1.3161) | |
| amn (1.25313) | |
| elu (0.770713) | |
| ecc (0.690211) | |
| eru (0.60024) | |
| ebs (0.591506) | |
| cov (0.528611) | |
| cty (0.5204) | |
| eep (0.490256) | |
| ece (0.45861) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| ese (0.379507) | |
| nep (0.36785) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| cly (0.241284) | |
| med (0.232504) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| nbm (0.0993246) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (1.3161) | |
| amn (1.25313) | |
| elu (0.770713) | |
| ecc (0.690211) | |
| eru (0.60024) | |
| ebs (0.591506) | |
| cov (0.528611) | |
| cty (0.5204) | |
| eep (0.490256) | |
| ece (0.45861) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| ese (0.379507) | |
| nep (0.36785) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| cly (0.241284) | |
| med (0.232504) | |
| cbl (0.229595) | |
| jca (0.22792) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| mga (0.160205) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| nbm (0.0993246) |