Non-Coding RNA Search

Ss1.1-Liv1-LVR01C050085.5

Sequence:


               
               TGGCGGCGGCAGCGGCGGCGGCGACGCTTCCCAGCCGTCCCCTCCCTGTGGTTGGCTGAG
CTTTGCTTTGAATGCACTTCCACTGAGAGGTTAAAGGAGTCTCCCCACCGTCCTGAGCAG
GCCTGGAATGGGTAATGGTGTGAAGGAAGGCGTGGTGCGTTTGCGTGAGGATGCTGAGTC
TGTCCTGCACTCGCCTGTCTCTTCAAAGAGTGATCACAGGCAAGTTCTCAGCTCCCTCCT
TTCGGGGGCCCTGGCTGGTGCTCTTGCCAAAACAGCAGTAGCTCCCCTGGACCGAACCAA
AATCATCTTCCAAGTGTCCTCGAAAAGATTTTCCGCCAAGGAGGCCTTCCGGCTCCTCTA
CTTCACCTACCTCAACGAAGGCTTCTTCAGCCTGTGGCGTGGAAACTCGGCCACCATGGT
GCGCGTGGTGCCCTACGCCGCCATCCAGTTCAGCGCGCACGAGGAGTACAAGCGCATCCT
GGGCAGATACTATGGCTTCCGCGGAGAAGCTCTGCCCCCTTGGCCCCGCCTCCTCGCGGG
CGCACTGGCTGGAACTACGGCTGCCTCGCTGACATACCCGCTGGACCTGGTCAGAGCAAG
GATGGCCGTGACCCCGAAGGAAATGTACAGCAACATCTTTCACGTCTTCATCCGCATCTC
GCGAGAAGAGGGGCTGAAGACCCTTTATCATGGATTCATTCCCACTGTGCTGGGGGTCAT
CCCTTACGCTGGCCTGAGCTTCTTCACCTACGAGACACTTAAGAGCCTGCACAGAGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGGCGGCAGCGGCGGCGGCGACGCTTCCCAGCCGTCCCCTCCCTGTGGTTGGCTGAG
CTTTGCTTTGAATGCACTTCCACTGAGAGGTTAAAGGAGTCTCCCCACCGTCCTGAGCAG
GCCTGGAATGGGTAATGGTGTGAAGGAAGGCGTGGTGCGTTTGCGTGAGGATGCTGAGTC
TGTCCTGCACTCGCCTGTCTCTTCAAAGAGTGATCACAGGCAAGTTCTCAGCTCCCTCCT
TTCGGGGGCCCTGGCTGGTGCTCTTGCCAAAACAGCAGTAGCTCCCCTGGACCGAACCAA
AATCATCTTCCAAGTGTCCTCGAAAAGATTTTCCGCCAAGGAGGCCTTCCGGCTCCTCTA
CTTCACCTACCTCAACGAAGGCTTCTTCAGCCTGTGGCGTGGAAACTCGGCCACCATGGT
GCGCGTGGTGCCCTACGCCGCCATCCAGTTCAGCGCGCACGAGGAGTACAAGCGCATCCT
GGGCAGATACTATGGCTTCCGCGGAGAAGCTCTGCCCCCTTGGCCCCGCCTCCTCGCGGG
CGCACTGGCTGGAACTACGGCTGCCTCGCTGACATACCCGCTGGACCTGGTCAGAGCAAG
GATGGCCGTGACCCCGAAGGAAATGTACAGCAACATCTTTCACGTCTTCATCCGCATCTC
GCGAGAAGAGGGGCTGAAGACCCTTTATCATGGATTCATTCCCACTGTGCTGGGGGTCAT
CCCTTACGCTGGCCTGAGCTTCTTCACCTACGAGACACTTAAGAGCCTGCACAGAGAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2887499|gb|AAC02758.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2887499|gb|AAC02758.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               207-314, gnl|bosTau2|chr7 (2563085-2563192)
               

               
               207-314, gnl|Hg17|chr19 (19073588-19073695)
               

               
               207-314, gnl|Mm7|chr8 (68647172-68647065)
               


               
               333-526, gnl|bosTau2|chr7 (2565856-2566049)
               

               
               333-526, gnl|Hg17|chr19 (19077366-19077561)
               

               
               333-526, gnl|Mm7|chr8 (68644789-68644570)
               


               
               625-776, gnl|bosTau2|chr7 (2566966-2567117)
               

               
               625-776, gnl|Hg17|chr19 (19079703-19079854)
               

               
               625-776, gnl|Mm7|chr8 (68643655-68643504)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-314, gnl|bosTau2|chr7 (2563085-2563192)
               

               
               207-314, gnl|Hg17|chr19 (19073588-19073695)
               

               
               207-314, gnl|Mm7|chr8 (68647172-68647065)
               


               
               333-526, gnl|bosTau2|chr7 (2565856-2566049)
               

               
               333-526, gnl|Hg17|chr19 (19077366-19077561)
               

               
               333-526, gnl|Mm7|chr8 (68644789-68644570)
               


               
               625-776, gnl|bosTau2|chr7 (2566966-2567117)
               

               
               625-776, gnl|Hg17|chr19 (19079703-19079854)
               

               
               625-776, gnl|Mm7|chr8 (68643655-68643504)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	207-314, gnl\|bosTau2\|chr7 (2563085-2563192)
	207-314, gnl\|Hg17\|chr19 (19073588-19073695)
	207-314, gnl\|Mm7\|chr8 (68647172-68647065)

	333-526, gnl\|bosTau2\|chr7 (2565856-2566049)
	333-526, gnl\|Hg17\|chr19 (19077366-19077561)
	333-526, gnl\|Mm7\|chr8 (68644789-68644570)

	625-776, gnl\|bosTau2\|chr7 (2566966-2567117)
	625-776, gnl\|Hg17\|chr19 (19079703-19079854)
	625-776, gnl\|Mm7\|chr8 (68643655-68643504)