Ss1.1-Liv1-LVR01D010086.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGAGCTCTGCAAAGACTTCTGCAGCCGCTACATCGCCTGTCTGAGGACGAAGATGAAC AGCGAGACCCTCCTGAGCGGGGAGCCCGGCAGCCCCTACTCCCCCGTCCAGTCCCAGCAG ATCCAGAGTGCCATCACGGGCACGCTCAGCCCCCAGGGAATCGTGGTGCCGGCGTCCGCG CTGCAGCAGGGGAACGTCACCATGGCAACAGTGGCAGGGGGCACAGTCTATCAGCCTGTC ACAGTCGTCACTCCCCAAGGCCAAGTGGTGACACAGGCCTTGTCGCCTGGCACGATCCGG ATCCAGAACTCCCAGCTTCAGTTACAGTTAAACCAAGACCTGAGCATCTTGCATCAAGAC GACGGCTCCTCCAAAAACAAGAGGGGGGTTCTGCCCAAGCACGCCACCAACGTCATGAGG TCCTGGCTCTTCCAGCACATCGGGCATCCCTACCCGACAGAAGACGAGAAGAAACAGATC GCGGCTCAGACGAATCTGACGCTGCTCCAAGTTAACAACTGGTTCATCAACGCCAGAAGA CGAATCTTGCAGCCGATGTTGGATTCTAGTTGTTCAGAGACTCCGAAAACAAAGAAAAAA ACTGCTCAGAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGAGCTCTGCAAAGACTTCTGCAGCCGCTACATCGCCTGTCTGAGGACGAAGATGAAC AGCGAGACCCTCCTGAGCGGGGAGCCCGGCAGCCCCTACTCCCCCGTCCAGTCCCAGCAG ATCCAGAGTGCCATCACGGGCACGCTCAGCCCCCAGGGAATCGTGGTGCCGGCGTCCGCG CTGCAGCAGGGGAACGTCACCATGGCAACAGTGGCAGGGGGCACAGTCTATCAGCCTGTC ACAGTCGTCACTCCCCAAGGCCAAGTGGTGACACAGGCCTTGTCGCCTGGCACGATCCGG ATCCAGAACTCCCAGCTTCAGTTACAGTTAAACCAAGACCTGAGCATCTTGCATCAAGAC GACGGCTCCTCCAAAAACAAGAGGGGGGTTCTGCCCAAGCACGCCACCAACGTCATGAGG TCCTGGCTCTTCCAGCACATCGGGCATCCCTACCCGACAGAAGACGAGAAGAAACAGATC GCGGCTCAGACGAATCTGACGCTGCTCCAAGTTAACAACTGGTTCATCAACGCCAGAAGA CGAATCTTGCAGCCGATGTTGGATTCTAGTTGTTCAGAGACTCCGAAAACAAAGAAAAAA ACTGCTCAGAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 314-432, - strand, RNAz p=0.844789 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 314-432, - strand, RNAz p=0.844789 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-117, gnl|bosTau2|chr28 (9860838-9860954) | |
| 1-117, gnl|canFam2|chr31 (39526499-39526702) | |
| 1-117, gnl|danRer3|chr1 (52886140-52886345) | |
| 1-117, gnl|dasNov1|scaffold_59850 (4352-4555) | |
| 1-117, gnl|echTel1|scaffold_263342 (7587-7790) | |
| 1-117, gnl|fr1|chrUn (107234338-107234170) | |
| 1-117, gnl|galGal2|chr1 (103327113-103327312) | |
| 1-117, gnl|hg17|chr21 (43306223-43306425) | |
| 1-117, gnl|Hg17|chr21 (43306301-43306417) | |
| 1-117, gnl|loxAfr1|scaffold_60595 (5197-5400) | |
| 1-117, gnl|mm7|chr17 (29783003-29783206) | |
| 1-117, gnl|Mm7|chr17 (29783082-29783198) | |
| 1-117, gnl|monDom2|scaffold_29 (9305411-9305619) | |
| 1-117, gnl|oryCun1|scaffold_212105 (126625-126811) | |
| 1-117, gnl|panTro1|chr22 (43419985-43420187) | |
| 1-117, gnl|rheMac2|chr3 (3676624-3676422) | |
| 1-117, gnl|rn3|chr20 (10027614-10027815) | |
| 1-117, gnl|tetNig1|chrUn_random (101936846-101936662) | |
| 1-117, gnl|xenTro1|scaffold_315 (228213-228019) | |
| 314-444, gnl|bosTau2|chr28 (9866986-9867116) | |
| 314-444, gnl|canFam2|chr31 (39537746-39537906) | |
| 314-444, gnl|danRer3|chr1 (52892207-52892359) | |
| 314-444, gnl|dasNov1|scaffold_85535 (7180-7342) | |
| 314-444, gnl|echTel1|scaffold_215325 (4792-4631) | |
| 314-444, gnl|fr1|chrUn (250814271-250814407) | |
| 314-444, gnl|galGal2|chr1 (103330837-103331011) | |
| 314-444, gnl|hg17|chr21 (43314475-43314636) | |
| 314-444, gnl|Hg17|chr21 (43314480-43314610) | |
| 314-444, gnl|loxAfr1|scaffold_27623 (14424-14266) | |
| 314-444, gnl|mm7|chr17 (29790431-29790587) | |
| 314-444, gnl|Mm7|chr17 (29790436-29790566) | |
| 314-444, gnl|monDom2|scaffold_29 (9317985-9318126) | |
| 314-444, gnl|oryCun1|scaffold_212105 (139558-139684) | |
| 314-444, gnl|panTro1|chr22 (43428319-43428480) | |
| 314-444, gnl|rheMac2|chr3 (3667395-3667234) | |
| 314-444, gnl|rn3|chr20 (10034299-10034455) | |
| 314-444, gnl|tetNig1|chrUn_random (101936009-101935872) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-117, gnl|bosTau2|chr28 (9860838-9860954) | |
| 1-117, gnl|canFam2|chr31 (39526499-39526702) | |
| 1-117, gnl|danRer3|chr1 (52886140-52886345) | |
| 1-117, gnl|dasNov1|scaffold_59850 (4352-4555) | |
| 1-117, gnl|echTel1|scaffold_263342 (7587-7790) | |
| 1-117, gnl|fr1|chrUn (107234338-107234170) | |
| 1-117, gnl|galGal2|chr1 (103327113-103327312) | |
| 1-117, gnl|hg17|chr21 (43306223-43306425) | |
| 1-117, gnl|Hg17|chr21 (43306301-43306417) | |
| 1-117, gnl|loxAfr1|scaffold_60595 (5197-5400) | |
| 1-117, gnl|mm7|chr17 (29783003-29783206) | |
| 1-117, gnl|Mm7|chr17 (29783082-29783198) | |
| 1-117, gnl|monDom2|scaffold_29 (9305411-9305619) | |
| 1-117, gnl|oryCun1|scaffold_212105 (126625-126811) | |
| 1-117, gnl|panTro1|chr22 (43419985-43420187) | |
| 1-117, gnl|rheMac2|chr3 (3676624-3676422) | |
| 1-117, gnl|rn3|chr20 (10027614-10027815) | |
| 1-117, gnl|tetNig1|chrUn_random (101936846-101936662) | |
| 1-117, gnl|xenTro1|scaffold_315 (228213-228019) | |
| 314-444, gnl|bosTau2|chr28 (9866986-9867116) | |
| 314-444, gnl|canFam2|chr31 (39537746-39537906) | |
| 314-444, gnl|danRer3|chr1 (52892207-52892359) | |
| 314-444, gnl|dasNov1|scaffold_85535 (7180-7342) | |
| 314-444, gnl|echTel1|scaffold_215325 (4792-4631) | |
| 314-444, gnl|fr1|chrUn (250814271-250814407) | |
| 314-444, gnl|galGal2|chr1 (103330837-103331011) | |
| 314-444, gnl|hg17|chr21 (43314475-43314636) | |
| 314-444, gnl|Hg17|chr21 (43314480-43314610) | |
| 314-444, gnl|loxAfr1|scaffold_27623 (14424-14266) | |
| 314-444, gnl|mm7|chr17 (29790431-29790587) | |
| 314-444, gnl|Mm7|chr17 (29790436-29790566) | |
| 314-444, gnl|monDom2|scaffold_29 (9317985-9318126) | |
| 314-444, gnl|oryCun1|scaffold_212105 (139558-139684) | |
| 314-444, gnl|panTro1|chr22 (43428319-43428480) | |
| 314-444, gnl|rheMac2|chr3 (3667395-3667234) | |
| 314-444, gnl|rn3|chr20 (10034299-10034455) | |
| 314-444, gnl|tetNig1|chrUn_random (101936009-101935872) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) |