Non-Coding RNA Search

Ss1.1-Liv1-LVR01D030094.5

Sequence:


               
               CTCTCATTGGCTGGGCTGTTGCCAGGCGAGGAGACATTCTTCCTTCCTCCTGCTGGGTAA
TGAGCCGGAATTTTCTTCCTGGATCCTGAATTGTTCTGGTTTCCTCCAGTCTCTGGTTAT
GGCTCTCCAAACTGAAGTTTCCCGTTTTCTCTCCCTCCTTTTGACTCGGGATCACGAAGA
ACAAAAGCTGCGCTTTTCCCCCAAAGCCTCACAACCTTTAGCTGGGAGGAGATTCAGAAG
CACAACCTGCGCACGGACAAGTGGCTCGTCATCGACCGCAAGGTCTACAACGTCACCAAA
TGGTCCAGCCGGCACCCCGGGGGCCACCGGGTCATCTCGCACTATGCAGGGGAAGATGCT
ACGGTAAGGGTCTGGGGCCTCTCCCGCCACCTTCCTCGGCTGCTGGAGGGAGTCCGGAGC
CGTGGGTCCCAGGGCGCCAAACAAGACCTCCAGCGCTGTGTGGAGCTTGGGGCGTCCCGA
AGGGAAGGAAAGTGTCTCCTGTGCTCTTCCCCCGCCCCGAATCCTCGTCCTCTAGGACAG
CTGGGCCAACGAGCCCTGGGGGTCGGATTCTGGAGCCCGGGAGGCAGATCTGAGCGGTGG
AGAACCGTGCCGGATCTACCGCGCGCACTGGGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCATTGGCTGGGCTGTTGCCAGGCGAGGAGACATTCTTCCTTCCTCCTGCTGGGTAA
TGAGCCGGAATTTTCTTCCTGGATCCTGAATTGTTCTGGTTTCCTCCAGTCTCTGGTTAT
GGCTCTCCAAACTGAAGTTTCCCGTTTTCTCTCCCTCCTTTTGACTCGGGATCACGAAGA
ACAAAAGCTGCGCTTTTCCCCCAAAGCCTCACAACCTTTAGCTGGGAGGAGATTCAGAAG
CACAACCTGCGCACGGACAAGTGGCTCGTCATCGACCGCAAGGTCTACAACGTCACCAAA
TGGTCCAGCCGGCACCCCGGGGGCCACCGGGTCATCTCGCACTATGCAGGGGAAGATGCT
ACGGTAAGGGTCTGGGGCCTCTCCCGCCACCTTCCTCGGCTGCTGGAGGGAGTCCGGAGC
CGTGGGTCCCAGGGCGCCAAACAAGACCTCCAGCGCTGTGTGGAGCTTGGGGCGTCCCGA
AGGGAAGGAAAGTGTCTCCTGTGCTCTTCCCCCGCCCCGAATCCTCGTCCTCTAGGACAG
CTGGGCCAACGAGCCCTGGGGGTCGGATTCTGGAGCCCGGGAGGCAGATCTGAGCGGTGG
AGAACCGTGCCGGATCTACCGCGCGCACTGGGAGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               214-636, gnl|bosTau2|chr29 (31655623-31655197)
               

               
               214-636, gnl|Hg17|chr11 (61352496-61352925)
               

               
               214-636, gnl|Mm7|chr19 (9781497-9781073)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-636, gnl|bosTau2|chr29 (31655623-31655197)
               

               
               214-636, gnl|Hg17|chr11 (61352496-61352925)
               

               
               214-636, gnl|Mm7|chr19 (9781497-9781073)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	214-636, gnl\|bosTau2\|chr29 (31655623-31655197)
	214-636, gnl\|Hg17\|chr11 (61352496-61352925)
	214-636, gnl\|Mm7\|chr19 (9781497-9781073)