Non-Coding RNA Search

Ss1.1-Liv1-LVR01D040083.5

Sequence:


               
               ATTCCAGGCGAACAGGCGAAGCCGCGGCCAGGCCAGCCTCCCGGGCTCGGACCCTGACCT
TCCGCCGGCTGCAGAGTCTCCGGCCACGCCGCCCCGGGAGGGAGAGAGAGAGAGAGAGAG
ACCCCCGCTGTCCCCGCAGCCGCGCGCCATCCAGACGGCGGAAGACGCGTCGGCGGGCAT
GGGCCGCTTCTCGCCGGAGCCGTGGCTGCCGCAGCTACTCAGCCCCCGGGGCCTGGCTCT
CGCCGCGGCCCTGTTGCTGCTGGTCTTATTCCTGCGCACCCGGCGCACCAGGAGACCTGG
TGAGCCTCCTTTAGTAAAAAGCTGGCTTCCTTTCATTGGAGAAGCCCTGAAATTACAAAG
AGATCCCATAGGTTTCATGACTACTCTTCAGAAGCAGTATGGTGACATTTTCACTGTTCT
CCTTGGAGGAAAGTACATCACATTTATCCTGGATCCTTTCCAGTACCAGTCAGTGATCAA
AAATCAAAAATTAAGCTTTCGAGGATTTAGTAATAAAGTATTACTGAGAGTATTTTCTAT
CAAAAAGTTGGTGGAGGATGACGCCATGAACGATGAGCTTCATACCTGCTATCAGCTTTT
ACAAGGGAGGCATCTGGACATGCTGATGGAAAACACAATGCAGAGTCTAAAGCAGGTTTT
TGAACCCCAGCTCTTAAAAACCACAAGTTGGCACACAGAATCCTTGTTCACATTCTGCAA
CTCAGTAATATTTGAGATGACATTGACAACTGTATATGGAAGTATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCCAGGCGAACAGGCGAAGCCGCGGCCAGGCCAGCCTCCCGGGCTCGGACCCTGACCT
TCCGCCGGCTGCAGAGTCTCCGGCCACGCCGCCCCGGGAGGGAGAGAGAGAGAGAGAGAG
ACCCCCGCTGTCCCCGCAGCCGCGCGCCATCCAGACGGCGGAAGACGCGTCGGCGGGCAT
GGGCCGCTTCTCGCCGGAGCCGTGGCTGCCGCAGCTACTCAGCCCCCGGGGCCTGGCTCT
CGCCGCGGCCCTGTTGCTGCTGGTCTTATTCCTGCGCACCCGGCGCACCAGGAGACCTGG
TGAGCCTCCTTTAGTAAAAAGCTGGCTTCCTTTCATTGGAGAAGCCCTGAAATTACAAAG
AGATCCCATAGGTTTCATGACTACTCTTCAGAAGCAGTATGGTGACATTTTCACTGTTCT
CCTTGGAGGAAAGTACATCACATTTATCCTGGATCCTTTCCAGTACCAGTCAGTGATCAA
AAATCAAAAATTAAGCTTTCGAGGATTTAGTAATAAAGTATTACTGAGAGTATTTTCTAT
CAAAAAGTTGGTGGAGGATGACGCCATGAACGATGAGCTTCATACCTGCTATCAGCTTTT
ACAAGGGAGGCATCTGGACATGCTGATGGAAAACACAATGCAGAGTCTAAAGCAGGTTTT
TGAACCCCAGCTCTTAAAAACCACAAGTTGGCACACAGAATCCTTGTTCACATTCTGCAA
CTCAGTAATATTTGAGATGACATTGACAACTGTATATGGAAGTATTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               407-768, gnl|bosTau2|chr14 (18712424-18712064)
               

               
               407-768, gnl|Hg17|chr8 (65691419-65691050)
               

               
               407-768, gnl|Mm7|chr3 (17823614-17823254)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               407-768, gnl|bosTau2|chr14 (18712424-18712064)
               

               
               407-768, gnl|Hg17|chr8 (65691419-65691050)
               

               
               407-768, gnl|Mm7|chr3 (17823614-17823254)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cli (0.152812)
               

               
               lun (0.150489)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               clu (0.119646)

	407-768, gnl\|bosTau2\|chr14 (18712424-18712064)
	407-768, gnl\|Hg17\|chr8 (65691419-65691050)
	407-768, gnl\|Mm7\|chr3 (17823614-17823254)