Non-Coding RNA Search

Ss1.1-Liv1-LVR01D080088.5

Sequence:


               
               GAGCACTTGCCTACCTACTTGATCTCTTCCTGTTTCACTCACTTCTCCTTGACTGTGTTC
TCTACTCCTGCCCTCCCTCCCTCAAAACAAACAAGACTCGGCAAAGCAGTAGTCAGACCA
AGCCCACTGGAATTTTCCTTCTGTTTTAATATACCCCTTGCTCTAGGCTTTGGGCCAAGA
TACCCAAGATTACTCTTGAGCACTGATATAAATTATTTAGACCTTAATCAAGATCAGAGC
TTAACTGTCATAGTAGGCAGTGCTGGAATAAGAAAAGCGTTCTGGTACATTTTCAGAATG
AGTCTTAATGAACAACGTCCTGTGTACGTACAAGTAAATGAACATAAAATAGATTTCTGA
CCAAAACAAGTGAACATTTCACATGTAAAACTCTGGGAGAGAAAAATAAAAGTGCTTCAG
AGTAGGTTTTAAAGAGGTATTTTAAGAACTACTTCTCCCAGGCTTTTTAAATTGTCAAAA
TAGTTATTCTGTTTGTTTAAAAAAAAAGCAAAAACTTTTTTTTAAGCAATAGATTTCTCT
TGAGTTTTCTTTTTCTTTTCTTCCTTTCTTCCTTCCTTTCTTTTTTTTTTTTTTAATGCT
GTGCAGGCAAGGCCCTGTAGAAATCAAATTCCTTTAACAACTAGTGGAAGAATTTAAATT
TGGCACCTTTATCAAAACTACTGTAACCAGTAGAAACAATAATATCTAAAGCTAAAGACT
CCTCAACAGAATAGCAAATATTTTGCTCAGGACATTTGAGGTCAAATTTAAAATGGAAAC
TTTTCTTATAAGCCCCTAGAGACAGATCTGAAAAAGCATATATAGAAGAGGAAAAGGAGA
GAATGAAAATAAAACTTAATATTATGCAGATTTATGCCTTATTTTTCAGCTTTTTGTGTG
TGTGTGTTGGTTCTCTCCATCTGGCTTTGCTTTTTATTAGATCTGTATAGTTTGGTTAAT
TAACCAGTGATTTAGTTTTATATTTAAGCTACAGTTAATCTTTTCTTTGTTGATAATTTA
TTTCTTTGCCTTTTTTTAAACTACTTTCAATTTTTAGATGTTTTATTCAGGCTGTTTAGA
GCGTCATCACAATGGCAATATGTATTTCCCTTAAAACACTGCAAACAAATATACTAAGAG
TGCACCATTTTAAACTACTAGTTATTGTGAGATTGCTGTGTAAGTTAATAAACACATTTG
TAAATACATTGTTTGCAGGAAGAAAATTTCTGAGTTACAGCTCAGGAAAAGCCTGCTGAA
TTTATGTTGTAAGCATTACTTAACACAGTATAAAGATGAAAAGACAACAAAAATATCTTC
ATACTTTCCCATCCCCTCATTGCAACACCCTTAACTGGAAGAATCTTACGCCCCTCTCTT
TCCTCTTCCTCCTCCACTTCCCACTTACTGTCACCTTGTAATGTTCAGAGAGCACTTGGA
TTATGGGTCTGAATAGGGAAATGCTTTCAGATAATCATTAGCCCACATACCCCAGTAACT
TATACTAAAGACGGGATGGAGTTGTAAAGTGCTTTTATAATACAATATTATTGTTGGAGG
CGAGGGTTGACTCTTTTGTTTTATTTTGACATGGCATGTCCTGAAATAAATATCAATTCA
ATATGGCAGATGGGTCATATTCTTTATTTGGAAGAGGTTGTGTTTTCTGACATGGGGGTG
ATGATCGTCCTACACACTGTAGCATTTGATTCTTTTTATGTATCTTTAAGGCAGTAACTA
GTTAATGCTGCTTTTAATATTGGTCTTTTTATTTGGCTGGGTTCTTCAACTGAAGCAGAG
ATATGTGTTCATAGTACAGTTTTTTTTTTTTAATAAACACAATTTTGCTGCCAAAAATGT
ATAAATAAACACAAAAGAAAACTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCACTTGCCTACCTACTTGATCTCTTCCTGTTTCACTCACTTCTCCTTGACTGTGTTC
TCTACTCCTGCCCTCCCTCCCTCAAAACAAACAAGACTCGGCAAAGCAGTAGTCAGACCA
AGCCCACTGGAATTTTCCTTCTGTTTTAATATACCCCTTGCTCTAGGCTTTGGGCCAAGA
TACCCAAGATTACTCTTGAGCACTGATATAAATTATTTAGACCTTAATCAAGATCAGAGC
TTAACTGTCATAGTAGGCAGTGCTGGAATAAGAAAAGCGTTCTGGTACATTTTCAGAATG
AGTCTTAATGAACAACGTCCTGTGTACGTACAAGTAAATGAACATAAAATAGATTTCTGA
CCAAAACAAGTGAACATTTCACATGTAAAACTCTGGGAGAGAAAAATAAAAGTGCTTCAG
AGTAGGTTTTAAAGAGGTATTTTAAGAACTACTTCTCCCAGGCTTTTTAAATTGTCAAAA
TAGTTATTCTGTTTGTTTAAAAAAAAAGCAAAAACTTTTTTTTAAGCAATAGATTTCTCT
TGAGTTTTCTTTTTCTTTTCTTCCTTTCTTCCTTCCTTTCTTTTTTTTTTTTTTAATGCT
GTGCAGGCAAGGCCCTGTAGAAATCAAATTCCTTTAACAACTAGTGGAAGAATTTAAATT
TGGCACCTTTATCAAAACTACTGTAACCAGTAGAAACAATAATATCTAAAGCTAAAGACT
CCTCAACAGAATAGCAAATATTTTGCTCAGGACATTTGAGGTCAAATTTAAAATGGAAAC
TTTTCTTATAAGCCCCTAGAGACAGATCTGAAAAAGCATATATAGAAGAGGAAAAGGAGA
GAATGAAAATAAAACTTAATATTATGCAGATTTATGCCTTATTTTTCAGCTTTTTGTGTG
TGTGTGTTGGTTCTCTCCATCTGGCTTTGCTTTTTATTAGATCTGTATAGTTTGGTTAAT
TAACCAGTGATTTAGTTTTATATTTAAGCTACAGTTAATCTTTTCTTTGTTGATAATTTA
TTTCTTTGCCTTTTTTTAAACTACTTTCAATTTTTAGATGTTTTATTCAGGCTGTTTAGA
GCGTCATCACAATGGCAATATGTATTTCCCTTAAAACACTGCAAACAAATATACTAAGAG
TGCACCATTTTAAACTACTAGTTATTGTGAGATTGCTGTGTAAGTTAATAAACACATTTG
TAAATACATTGTTTGCAGGAAGAAAATTTCTGAGTTACAGCTCAGGAAAAGCCTGCTGAA
TTTATGTTGTAAGCATTACTTAACACAGTATAAAGATGAAAAGACAACAAAAATATCTTC
ATACTTTCCCATCCCCTCATTGCAACACCCTTAACTGGAAGAATCTTACGCCCCTCTCTT
TCCTCTTCCTCCTCCACTTCCCACTTACTGTCACCTTGTAATGTTCAGAGAGCACTTGGA
TTATGGGTCTGAATAGGGAAATGCTTTCAGATAATCATTAGCCCACATACCCCAGTAACT
TATACTAAAGACGGGATGGAGTTGTAAAGTGCTTTTATAATACAATATTATTGTTGGAGG
CGAGGGTTGACTCTTTTGTTTTATTTTGACATGGCATGTCCTGAAATAAATATCAATTCA
ATATGGCAGATGGGTCATATTCTTTATTTGGAAGAGGTTGTGTTTTCTGACATGGGGGTG
ATGATCGTCCTACACACTGTAGCATTTGATTCTTTTTATGTATCTTTAAGGCAGTAACTA
GTTAATGCTGCTTTTAATATTGGTCTTTTTATTTGGCTGGGTTCTTCAACTGAAGCAGAG
ATATGTGTTCATAGTACAGTTTTTTTTTTTTAATAAACACAATTTTGCTGCCAAAAATGT
ATAAATAAACACAAAAGAAAACTAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1156-1351, - strand, RNAz p=0.985962
               

               
               1198-1353, + strand, RNAz p=0.999515

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1156-1351, - strand, RNAz p=0.985962
               

               
               1198-1353, + strand, RNAz p=0.999515

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1283-1367, - strand, RNAmicro p=0.977362

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1283-1367, - strand, RNAmicro p=0.977362

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               8-1882, gnl|bosTau2|chr15 (41970245-41968406)
               

               
               8-1882, gnl|Hg17|chr11 (73066225-73064333)
               

               
               8-1882, gnl|Mm7|chr7 (96685933-96687766)
               


               
               1198-1496, gnl|bosTau2|chr1 (37675218-37675518)
               

               
               1198-1496, gnl|Mm7|chr7 (96687115-96687382)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-1882, gnl|bosTau2|chr15 (41970245-41968406)
               

               
               8-1882, gnl|Hg17|chr11 (73066225-73064333)
               

               
               8-1882, gnl|Mm7|chr7 (96685933-96687766)
               


               
               1198-1496, gnl|bosTau2|chr1 (37675218-37675518)
               

               
               1198-1496, gnl|Mm7|chr7 (96687115-96687382)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               pan (0.471921)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.582411)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               fhi (0.508733)
               

               
               pan (0.471921)
               

               
               eru (0.360144)
               

               
               fbs (0.350693)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               tbr (0.308356)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1156-1351, - strand, RNAz p=0.985962
	1198-1353, + strand, RNAz p=0.999515

	8-1882, gnl\|bosTau2\|chr15 (41970245-41968406)
	8-1882, gnl\|Hg17\|chr11 (73066225-73064333)
	8-1882, gnl\|Mm7\|chr7 (96685933-96687766)

	1198-1496, gnl\|bosTau2\|chr1 (37675218-37675518)
	1198-1496, gnl\|Mm7\|chr7 (96687115-96687382)

	lin (0.582411)
	sin (0.524843)
	pro (0.512033)
	sug (0.509165)
	fhi (0.508733)
	pan (0.471921)
	eru (0.360144)
	fbs (0.350693)
	eye (0.341006)
	spc (0.340097)
	tbr (0.308356)
	liv (0.292569)
	fce (0.271592)
	bla (0.248694)
	tra (0.246184)
	cbe (0.239234)
	ebs (0.236602)
	nbm (0.198649)
	aor (0.195274)
	ton (0.1755)
	mcp (0.170648)
	lun (0.150489)
	isp (0.150376)
	fat (0.147427)
	lyg (0.133103)
	ute (0.132784)
	kid (0.129735)
	ese (0.126502)
	ecc (0.115035)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)