Ss1.1-Liv1-LVR01D120084.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTTCCTGCGGCTTTTCAGACCCCGTATGCCGCAGTTCTTCGCTACCCCTGGGGCGTAC GTCCGTCTGGGCCGCGCATGCGCATCCACGTCCTGGGGGGGGAGCAGGCGCAATAGTAGG GTCAGCCTGGGAGGTCGCTAAGCACGTGTGTTGGGCTGTCCCGTGCCGCGTTAGAGAGAG TCGACCCTCGATTTTATCGGTGTCCACTTTGGGCAGCGGACTTACAAAGGTCATGGCGCC GGCGGAAATCCTGAACGGGAAGGTGGTCTCCGCGCAAATAAGGGAGAAACTGAAGAGCAA AGTCGCTCAGATGAAGGAGCAGGTACCTGGTTTCACCCCAGGCCTGGCCATTTTACAGGT TGGCAACAGAGATGATTCTAATCTTTATATAAATGTGAAACTGAAGGCTGCTAAAGAGAT TGGAATCAAAGCCATGCACATTAAGTTACCACGAACGGCCACTGAATCTGAGGTGTTAAA GTGCATTACATCTTTAAACGAAGACCTCACTGTACATGGGTTCATACTGCAGCTGCCTTT AGATTCAGAGAATCCTATTAACGCAGAGGCACTGATCAATGCTATTGCACCCGAAAAGGA TGTGGACGGATTGACTAGCATCAATGCTGGGAAACTTGCTAGAGGTGACCTAAATGACTG CTTCATTCCTTGTACACCCAAAGGATGCTTGGAACTCATCAAGCAGACAGGGGTGCAGAT TGCCGGGAGGCAGGCTGTGGTGATCGGGCGCAGTAAAATAGTGGGTGCCCCGATGCATGA CTTGCTTCTGTGGAACCATGCCACAGTGACCACCTGCCACTCCAAGACTGCCAATCTAAA CGAGGAGGTAAATAAAGGTGACATCGTGGTGGTTGCAGCTGGTAAGCCCGAAATGGTGAA AGGGGAGTGGATCAAGCCACGAGCGGTAGTCATTGACTGTGGCATCAATTGTGTCCCAGA TGATACAAAACCAAGTGGGAAAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTTCCTGCGGCTTTTCAGACCCCGTATGCCGCAGTTCTTCGCTACCCCTGGGGCGTAC GTCCGTCTGGGCCGCGCATGCGCATCCACGTCCTGGGGGGGGAGCAGGCGCAATAGTAGG GTCAGCCTGGGAGGTCGCTAAGCACGTGTGTTGGGCTGTCCCGTGCCGCGTTAGAGAGAG TCGACCCTCGATTTTATCGGTGTCCACTTTGGGCAGCGGACTTACAAAGGTCATGGCGCC GGCGGAAATCCTGAACGGGAAGGTGGTCTCCGCGCAAATAAGGGAGAAACTGAAGAGCAA AGTCGCTCAGATGAAGGAGCAGGTACCTGGTTTCACCCCAGGCCTGGCCATTTTACAGGT TGGCAACAGAGATGATTCTAATCTTTATATAAATGTGAAACTGAAGGCTGCTAAAGAGAT TGGAATCAAAGCCATGCACATTAAGTTACCACGAACGGCCACTGAATCTGAGGTGTTAAA GTGCATTACATCTTTAAACGAAGACCTCACTGTACATGGGTTCATACTGCAGCTGCCTTT AGATTCAGAGAATCCTATTAACGCAGAGGCACTGATCAATGCTATTGCACCCGAAAAGGA TGTGGACGGATTGACTAGCATCAATGCTGGGAAACTTGCTAGAGGTGACCTAAATGACTG CTTCATTCCTTGTACACCCAAAGGATGCTTGGAACTCATCAAGCAGACAGGGGTGCAGAT TGCCGGGAGGCAGGCTGTGGTGATCGGGCGCAGTAAAATAGTGGGTGCCCCGATGCATGA CTTGCTTCTGTGGAACCATGCCACAGTGACCACCTGCCACTCCAAGACTGCCAATCTAAA CGAGGAGGTAAATAAAGGTGACATCGTGGTGGTTGCAGCTGGTAAGCCCGAAATGGTGAA AGGGGAGTGGATCAAGCCACGAGCGGTAGTCATTGACTGTGGCATCAATTGTGTCCCAGA TGATACAAAACCAAGTGGGAAAAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 708-826, + strand, RNAz p=0.848154 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 708-826, + strand, RNAz p=0.848154 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 4-277, gnl|bosTau2|chr10 (51706105-51705821) | |
| 4-277, gnl|canFam2|chr8 (41794458-41794627) | |
| 4-277, gnl|dasNov1|scaffold_126178 (35792-35950) | |
| 4-277, gnl|hg17|chr14 (63875382-63875555) | |
| 4-277, gnl|Hg17|chr14 (63924650-63924943) | |
| 4-277, gnl|Mm7|chr12 (74213460-74213734) | |
| 4-277, gnl|oryCun1|scaffold_199450 (6570-6415) | |
| 4-277, gnl|rheMac2|chr7 (127380974-127381158) | |
| 463-609, gnl|bosTau2|chr10 (51680623-51680477) | |
| 463-609, gnl|canFam2|chr1 (32945848-32945974) | |
| 463-609, gnl|danRer3|chr20 (39522236-39522362) | |
| 463-609, gnl|dasNov1|scaffold_100970 (1890-1765) | |
| 463-609, gnl|echTel1|scaffold_298724 (18098-18224) | |
| 463-609, gnl|fr1|chrUn (59929151-59929037) | |
| 463-609, gnl|Hg17|chr14 (63951819-63951965) | |
| 463-609, gnl|hg17|chrX (57304497-57304616) | |
| 463-609, gnl|loxAfr1|scaffold_2075 (20780-20654) | |
| 463-609, gnl|mm7|chr12 (74238703-74238577) | |
| 463-609, gnl|Mm7|chr12 (74238556-74238702) | |
| 463-609, gnl|oryCun1|scaffold_205866 (3519-3393) | |
| 463-609, gnl|panTro1|chr15 (63519811-63519685) | |
| 463-609, gnl|rheMac2|chrX (55760037-55760162) | |
| 463-609, gnl|rn3|chr3 (116473210-116473084) | |
| 463-609, gnl|tetNig1|chr10 (3740578-3740464) | |
| 463-609, gnl|xenTro1|scaffold_3544 (8367-8487) | |
| 708-851, gnl|bosTau2|chr10 (51678342-51678199) | |
| 708-851, gnl|canFam2|chr1 (32945612-32945703) | |
| 708-851, gnl|canFam2|chr8 (41886777-41886953) | |
| 708-851, gnl|danRer3|chr20 (39516353-39516195) | |
| 708-851, gnl|danRer3|chr20 (39516199-39516290) | |
| 708-851, gnl|dasNov1|scaffold_100970 (2097-2035) | |
| 708-851, gnl|dasNov1|scaffold_11942 (13532-13707) | |
| 708-851, gnl|echTel1|scaffold_298724 (14496-14320) | |
| 708-851, gnl|echTel1|scaffold_298724 (14343-14434) | |
| 708-851, gnl|fr1|chrUn (59929429-59929571) | |
| 708-851, gnl|fr1|chrUn (59929566-59929475) | |
| 708-851, gnl|galGal2|chr5 (49718260-49718113) | |
| 708-851, gnl|hg17|chr14 (63954341-63954517) | |
| 708-851, gnl|Hg17|chr14 (63954356-63954499) | |
| 708-851, gnl|hg17|chrX (57304261-57304352) | |
| 708-851, gnl|loxAfr1|scaffold_2075 (23537-23717) | |
| 708-851, gnl|loxAfr1|scaffold_2075 (23694-23601) | |
| 708-851, gnl|mm7|chr12 (74241056-74241232) | |
| 708-851, gnl|mm7|chr12 (74241209-74241118) | |
| 708-851, gnl|Mm7|chr12 (74241071-74241214) | |
| 708-851, gnl|monDom2|scaffold_8 (78093582-78093758) | |
| 708-851, gnl|monDom2|scaffold_8 (78093735-78093644) | |
| 708-851, gnl|oryCun1|scaffold_205866 (5944-6116) | |
| 708-851, gnl|oryCun1|scaffold_205866 (6097-6006) | |
| 708-851, gnl|panTro1|chr15 (63522188-63522364) | |
| 708-851, gnl|panTro1|chrX (58728851-58728942) | |
| 708-851, gnl|rheMac2|chr7 (127412478-127412654) | |
| 708-851, gnl|rheMac2|chrX (55759801-55759892) | |
| 708-851, gnl|rn3|chr3 (116473452-116473361) | |
| 708-851, gnl|rn3|chr6 (98880707-98880883) | |
| 708-851, gnl|tetNig1|chr10 (3740851-3741007) | |
| 708-851, gnl|tetNig1|chr10 (3740998-3740907) | |
| 708-851, gnl|xenTro1|scaffold_34 (315186-315346) | |
| 708-851, gnl|xenTro1|scaffold_3544 (8137-8228) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-277, gnl|bosTau2|chr10 (51706105-51705821) | |
| 4-277, gnl|canFam2|chr8 (41794458-41794627) | |
| 4-277, gnl|dasNov1|scaffold_126178 (35792-35950) | |
| 4-277, gnl|hg17|chr14 (63875382-63875555) | |
| 4-277, gnl|Hg17|chr14 (63924650-63924943) | |
| 4-277, gnl|Mm7|chr12 (74213460-74213734) | |
| 4-277, gnl|oryCun1|scaffold_199450 (6570-6415) | |
| 4-277, gnl|rheMac2|chr7 (127380974-127381158) | |
| 463-609, gnl|bosTau2|chr10 (51680623-51680477) | |
| 463-609, gnl|canFam2|chr1 (32945848-32945974) | |
| 463-609, gnl|danRer3|chr20 (39522236-39522362) | |
| 463-609, gnl|dasNov1|scaffold_100970 (1890-1765) | |
| 463-609, gnl|echTel1|scaffold_298724 (18098-18224) | |
| 463-609, gnl|fr1|chrUn (59929151-59929037) | |
| 463-609, gnl|Hg17|chr14 (63951819-63951965) | |
| 463-609, gnl|hg17|chrX (57304497-57304616) | |
| 463-609, gnl|loxAfr1|scaffold_2075 (20780-20654) | |
| 463-609, gnl|mm7|chr12 (74238703-74238577) | |
| 463-609, gnl|Mm7|chr12 (74238556-74238702) | |
| 463-609, gnl|oryCun1|scaffold_205866 (3519-3393) | |
| 463-609, gnl|panTro1|chr15 (63519811-63519685) | |
| 463-609, gnl|rheMac2|chrX (55760037-55760162) | |
| 463-609, gnl|rn3|chr3 (116473210-116473084) | |
| 463-609, gnl|tetNig1|chr10 (3740578-3740464) | |
| 463-609, gnl|xenTro1|scaffold_3544 (8367-8487) | |
| 708-851, gnl|bosTau2|chr10 (51678342-51678199) | |
| 708-851, gnl|canFam2|chr1 (32945612-32945703) | |
| 708-851, gnl|canFam2|chr8 (41886777-41886953) | |
| 708-851, gnl|danRer3|chr20 (39516353-39516195) | |
| 708-851, gnl|danRer3|chr20 (39516199-39516290) | |
| 708-851, gnl|dasNov1|scaffold_100970 (2097-2035) | |
| 708-851, gnl|dasNov1|scaffold_11942 (13532-13707) | |
| 708-851, gnl|echTel1|scaffold_298724 (14496-14320) | |
| 708-851, gnl|echTel1|scaffold_298724 (14343-14434) | |
| 708-851, gnl|fr1|chrUn (59929429-59929571) | |
| 708-851, gnl|fr1|chrUn (59929566-59929475) | |
| 708-851, gnl|galGal2|chr5 (49718260-49718113) | |
| 708-851, gnl|hg17|chr14 (63954341-63954517) | |
| 708-851, gnl|Hg17|chr14 (63954356-63954499) | |
| 708-851, gnl|hg17|chrX (57304261-57304352) | |
| 708-851, gnl|loxAfr1|scaffold_2075 (23537-23717) | |
| 708-851, gnl|loxAfr1|scaffold_2075 (23694-23601) | |
| 708-851, gnl|mm7|chr12 (74241056-74241232) | |
| 708-851, gnl|mm7|chr12 (74241209-74241118) | |
| 708-851, gnl|Mm7|chr12 (74241071-74241214) | |
| 708-851, gnl|monDom2|scaffold_8 (78093582-78093758) | |
| 708-851, gnl|monDom2|scaffold_8 (78093735-78093644) | |
| 708-851, gnl|oryCun1|scaffold_205866 (5944-6116) | |
| 708-851, gnl|oryCun1|scaffold_205866 (6097-6006) | |
| 708-851, gnl|panTro1|chr15 (63522188-63522364) | |
| 708-851, gnl|panTro1|chrX (58728851-58728942) | |
| 708-851, gnl|rheMac2|chr7 (127412478-127412654) | |
| 708-851, gnl|rheMac2|chrX (55759801-55759892) | |
| 708-851, gnl|rn3|chr3 (116473452-116473361) | |
| 708-851, gnl|rn3|chr6 (98880707-98880883) | |
| 708-851, gnl|tetNig1|chr10 (3740851-3741007) | |
| 708-851, gnl|tetNig1|chr10 (3740998-3740907) | |
| 708-851, gnl|xenTro1|scaffold_34 (315186-315346) | |
| 708-851, gnl|xenTro1|scaffold_3544 (8137-8228) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| eep (0.122564) | |
| jca (0.11396) |